ID   DQ925463; SV 1; linear; genomic RNA; STD; VRL; 1676 BP.
XX
AC   DQ925463;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Turnip mosaic virus isolate TuMV-VN/Rs2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1676
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1676
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; b4176976d103ab85bb7cf4075d8e0d3a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1676
FT                   /organism="Turnip mosaic virus"
FT                   /host="Chinese radish (Raphanus sativus)"
FT                   /isolate="TuMV-VN/Rs2"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Laichau"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1255"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1468
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP65"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP65"
FT                   /protein_id="ABL09438.1"
FT                   /translation="DNTLMVILAVNYSLKKSGIPSELRDSIIRFFVNGDDLLLSVHPEY
FT                   EYILDTMADNFRELGLKYAFDSRTMEKGDLWFMSHQGHKREGIWIPKLEPERIVSILEW
FT                   DRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETA
FT                   LRKLYLDKEPAQEDLTHYLQAIFEDYEDDAEVCVYHQAGETLDAGLTDEQKQAEKEKKE
FT                   REKAEKERERQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYE
FT                   QRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC
FT                   IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDR
FT                   PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDG
FT                   NVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..601
FT                   /product="NIb"
FT   mat_peptide     602..1465
FT                   /product="CP"
FT   3'UTR           1469..1676
XX
SQ   Sequence 1676 BP; 518 A; 335 C; 435 G; 388 T; 0 other;
     agataacacg ctcatggtca tactggcagt caactattca ctcaagaaaa gcggaatccc        60
     aagtgaattg cgcgacagca tcatcagatt cttcgtcaac ggagatgatt tactgctaag       120
     cgtgcaccca gagtatgagt atatccttga cactatggca gacaactttc gtgaattggg       180
     cctgaagtat gctttcgact caaggactat ggaaaaagga gacctttggt ttatgtcgca       240
     ccaagggcac aaaagagagg gaatctggat tcccaagctc gagccggagc gaatagtatc       300
     gattctagaa tgggatcggt cgaaagagcc atgccatcga ctagaggcaa tctgcgcagc       360
     gatgattgag tcgtggggat acgacaagtt aactcacgag atacgcaagt tttacgcgtg       420
     gatgattgaa caagctccat ttagctccct agcacaagaa gggaaagctc cttacatagc       480
     ggaaacagcg ctgaggaagc tctaccttga taaggaacca gctcaagagg atctcaccca       540
     ttacttgcaa gcaatctttg aggattatga agatgatgct gaggtgtgtg tttatcacca       600
     ggcaggtgag acgcttgacg caggtttaac agatgagcaa aagcaggcag agaaggagaa       660
     gaaggagaga gagaaggcgg aaaaggaacg agagaggcag aagcagttgg cactcaagaa       720
     aggcaaggat gtcgcacaag aagagggaaa acgcgataag gaagtaaacg ctggaacctc       780
     tggaactttc agtgtaccca gacttaagag tttgacaagc aagatgcgcg tgccaagata       840
     cgaacaaaga gtggctttaa acctcgatca tctaatccta tacacgccgg agcagacgga       900
     tctatccaac acacgttcaa cgcgaaagca gtttgacaca tggtttgaag gtgtgatggc       960
     tgattacgaa ctaacggagg acaaaatgca aatcattctc aatggtttaa tggtctggtg      1020
     cattgagaac ggaacctccc cgaatataaa cggaatgtgg gtgatgatgg acggcgatga      1080
     tcaggtggaa ttcccgatca aaccgctcat tgaccacgcc aaacccacat ttaggcagat      1140
     aatggcccat ttcagtgacg tagctgaagc gtacattgaa aagcgtaacc aagaccgacc      1200
     atacatgcca cgatatggtc ttcagcgcaa tttaaccgac atgagcttag ctcgatacgc      1260
     gtttgatttc tatgaaatga cttctagaac tccaatacgt gcgagagaag cacacatcca      1320
     gatgaaagca gcagcactgc gtggcgcaaa taacaatttg ttcggcttgg atggaaacgt      1380
     tggtacaacg gtagagaaca cggaaaggca tacgaccgag gacgttaatc ggaacatgca      1440
     taacttactt ggcgttaagg ggttatgaag ttgtatgctg gtagactata agtatttaag      1500
     tttactcgtt agtattctcg cttatgggaa atatgtaagt ttgttaaagc agccagtgtg      1560
     actttgtcat gtgtgttgtt gttactttct atattttcgc cgaacatttt attggtgtta      1620
     gcgcatgtgg tgaggatcgt cctcgattgc cttaacattt gatggatgca agggac          1676
//