ID   DQ925461; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   DQ925461;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Turnip mosaic virus isolate TuMV-VN/Bj2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1677
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1677
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; abcef3b87b5a6fc3f6e67beeb45c7427.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Turnip mosaic virus"
FT                   /host="Chinese mustard (Brassica juncea)"
FT                   /isolate="TuMV-VN/Bj2"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hoabinh"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1130"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1468
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP63"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP63"
FT                   /protein_id="ABL09436.1"
FT                   /translation="DNTLMVILAVNYSLKKSGIPSELRDSIIKFFVNGDDLLLSVHPEY
FT                   EYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSILEW
FT                   DRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETA
FT                   LRKLYIDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTDEQKQAEKEKKE
FT                   REKAEKEREKQRQLALKKGKDVAQEEGKRDREVNAGTSGTFSVPRLKSLTSKMRVPRYE
FT                   QRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIVLNGLMVWC
FT                   IENGTSPNINGMWVMMDGNDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDR
FT                   PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDG
FT                   NVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..601
FT                   /product="NIb"
FT   mat_peptide     602..1465
FT                   /product="CP"
XX
SQ   Sequence 1677 BP; 515 A; 329 C; 439 G; 394 T; 0 other;
     agacaacacg ctcatggtca tactggcagt caactattca ctcaagaaaa gtggaattcc        60
     aagtgagctg cgcgacagca ttatcaaatt cttcgtcaac ggagatgatt tactgctaag       120
     cgtacaccca gagtatgagt acatccttga tactatggca gataactttc gtgaactggg       180
     cctgaaatat actttcgact caaggaccag ggaaaaagga gacctttggt ttatgtcgca       240
     ccaagggcac aaaagagagg gaatctggat tcccaaactc gagccagagc gaatagtatc       300
     gattttagaa tgggatcggt cgaaagaacc atgccatcga ctggaggcaa tctgcgcagc       360
     gatgattgag tcgtgggggt acgacaagtt aactcacgaa atacgcaagt tttacgcgtg       420
     gatgattgaa caagctccat ttagctcctt agcacaagaa gggaaagctc cttatatagc       480
     ggagacagcg ctgaggaagc tctacattga taaggaaccg gctcaagagg atctcaccca       540
     gtacttgcaa gcaatctttg aggattatga agatggtgct gaggtttgtg tttatcacca       600
     ggcaggtgag acgcttgatg caggtttgac agacgagcaa aagcaggcag agaaggagaa       660
     gaaggagagg gagaaggcag agaaggaacg agagaagcag aggcagttgg cactcaagaa       720
     aggcaaggat gttgcacaag aagagggaaa acgcgacagg gaagtaaacg ctggaacctc       780
     tggtactttc agtgtaccta gacttaagag tctaacaagc aagatgcgcg tgccaagata       840
     cgagcaaaga gtggctttaa acctcgatca tttaatccta tacacgccgg agcagacgga       900
     tctatccaac acacgttcaa cgcgaaagca gtttgacaca tggtttgaag gtgtaatggc       960
     tgattatgaa ctgacggagg ataaaatgca aattgttctc aatggcttaa tggtctggtg      1020
     cattgagaac ggaacctccc cgaacataaa cggaatgtgg gtgatgatgg acggcaatga      1080
     tcaggtggaa ttcccgatca aaccgctcat tgaccacgcc aaacccacat ttaggcagat      1140
     aatggcccat ttcagtgacg tagctgaagc gtacattgaa aagcgtaacc aagaccgacc      1200
     atacatgcca cgatatggtc ttcagcgtaa tttaaccgac atgagcttag ctcgatacgc      1260
     gtttgatttc tatgaaatga cttctagaac tccaatacgt gcgagagaag cacacatcca      1320
     gatgaaagca gcagcactgc gtggcgcaaa taacaatttg ttcggcttgg atggaaacgt      1380
     tggtacaacg gtagagaaca cggagaggca tacgaccgag gacgttaatc ggaacatgca      1440
     taacttactt ggcgttaagg ggttatgaag ttgtatgctg gtagactata agtatttaag      1500
     tttactcgtt agtattctcg cttatgggaa atatgtaagt ttgttcaagc agccagtgtg      1560
     actctgtcat gtgtgttgtt gttactttct atattttcgc cgaacatttt attggtgtta      1620
     gcgcatgtgg tgaggattgt cctcggttgc cttaacattt gataggatgc aagggac         1677
//