ID   DQ925460; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   DQ925460;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Turnip mosaic virus isolate TuMV-VN/Bj1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1677
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1677
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 569c5d8ae183bce63af96bf3524e7f87.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Turnip mosaic virus"
FT                   /host="Chinese mustard (Brassica juncea)"
FT                   /isolate="TuMV-VN/Bj1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Daklak"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1055"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1468
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP62"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP62"
FT                   /protein_id="ABL09435.1"
FT                   /translation="DNTLMVILAVNYSLRKSGIPNELRDSIIRFFVNGDDLLLSVHPKY
FT                   EYVLDTMADNFCELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSILEW
FT                   DRSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPYSSLAQEGKAPYIAETA
FT                   LRKLYLDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTEEQKQAEKERKE
FT                   RERSEKERERQRQLALKKGKNAAQEEGERDKEVNAGTSGTFSVPRLKSLTSKMRVPKYE
FT                   QRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC
FT                   IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDR
FT                   PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDG
FT                   NVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..601
FT                   /product="NIb"
FT   mat_peptide     602..1465
FT                   /product="CP"
XX
SQ   Sequence 1677 BP; 535 A; 338 C; 418 G; 386 T; 0 other;
     ggacaacacg ctcatggtca tattagcagt caactactca ctcaggaaaa gtggaattcc        60
     aaatgaattg cgcgatagca tcatcagatt tttcgtcaat ggagatgact tgctgctaag       120
     cgtacatcca aagtacgagt atgtccttga taccatggcg gataatttct gtgaactggg       180
     cttgaagtat accttcgatt caagaaccag agaaaaaggt gacctttggt ttatgtcgca       240
     ccaaggacac aaaagagaag ggatctggat ccccaagctg gaaccagagc gaatagtatc       300
     gatcctagag tgggatcgat caaaagagcc atgccaccga cttgaggcaa tctgcgcagc       360
     aatgattgaa tcgtggggat atgataagtt gacccatgag atacgcaagt tttatgcatg       420
     gatgatcgaa caggctccat acagctctct agcacaagag ggaaaagctc cttacatagc       480
     ggaaacggca ctgaggaaac tttaccttga caaagaacca gctcaagaag atcttactca       540
     atacttacaa gcaatcttcg aagattacga agatggtgcc gaagtgtgtg tttatcacca       600
     ggcaggtgag acgcttgatg ccggtctaac agaagagcag aagcaggctg aaaaggagag       660
     aaaggagaga gagagatcag agaaagagcg agaaaggcaa agacagctag cgcttaagaa       720
     aggcaaaaac gcagcacaag aagagggcga acgcgacaag gaagtaaacg ctggaacctc       780
     tggaactttc agtgtaccca gacttaagag tctgacaagc aagatgcgcg tgccaaaata       840
     tgagcaaaga gtggctttaa acctcgatca cctaatccta tatacgccgg agcagacgga       900
     tctatccaac acacgttcaa cgcgaaagca gtttgacaca tggtttgaag gtgtaatggc       960
     tgattatgaa ctaacggagg acaaaatgca aatcattctc aatggtttaa tggtctggtg      1020
     cattgagaac ggaacctccc caaacataaa cggaatgtgg gtgatgatgg acggcgatga      1080
     tcaggtggaa ttcccgatca aaccgctcat tgaccacgcc aaacccacat ttaggcagat      1140
     aatggcccat ttcagtgacg tagctgaagc gtacattgaa aagcgtaacc aagaccgacc      1200
     atacatgcca cgatatggtc ttcagcgcaa tttaaccgac atgagcttag ctcgatacgc      1260
     atttgatttc tatgaaatga cttctagaac tccaatacgt gcgagagaag cacacatcca      1320
     gatgaaagca gcagcactgc gtggcgcaaa taacaatttg ttcggcttgg atggaaacgt      1380
     tggtacaacg gtagagaaca cggagaggca tacgaccgag gacgttaatc ggaacatgca      1440
     taacttactt ggcgttaagg ggttatgaag ttgtatgctg gtagactata agtatttaag      1500
     tttactcgtt agtattctcg cttatgggaa atatgtaagt ttgctaaagc agccagtgtg      1560
     acttcgtcat gtgtgttgtt gttactttct atgttttcgc cgaacatttt attggtgtta      1620
     gcgcatgttg tgaggatcat cctcgattgc cttaacattt gataggatgc aagggac         1677
//