ID   DQ925459; SV 1; linear; genomic RNA; STD; VRL; 1677 BP.
XX
AC   DQ925459;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Turnip mosaic virus isolate TuMV-VN/Rs1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Turnip mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1677
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1677
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; c259d5909306a0ed428c5e8ba2888036.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1677
FT                   /organism="Turnip mosaic virus"
FT                   /host="Chinese radish (Raphanus sativus)"
FT                   /isolate="TuMV-VN/Rs1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Daklak"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1042"
FT                   /db_xref="taxon:12230"
FT   CDS             <1..1468
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP61"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP61"
FT                   /protein_id="ABL09434.1"
FT                   /translation="DNTLMVILAVNYSLKKSGIPSELRDSIVKFFVNGDDLLLSVHPEY
FT                   EYILDTMADNFRELGLKYTFDSRTREKGDLWFMSHQGHKREGIWIPKLEPERIVSILEW
FT                   DRSKEPCHRLEAICAAMIESWGYDKLTHEIRRFYAWMIEQAPFSSLAQEGKAPYIAETA
FT                   LRKLYIDKEPAQEDLTQYLQAIFEDYEDGAEVCVYHQAGETLDAGLTDEQKQAEKEKKE
FT                   RERAEKEREKQKQLALKKGKDVAQEEGKRDKEVNAGTSGTFSVPRLKSLTSKMRVPRYE
FT                   QRVALNLDHLILYTPEQTDLSNTRSTRKQFDTWFEGVMADYELTEDKMQIILNGLMVWC
FT                   IENGTSPNINGMWVMMDGDDQVEFPIKPLIDHAKPTFRQIMAHFSDVAEAYIEKRNQDR
FT                   PYMPRYGLQRNLTDMSLARYAFDFYEMTSRTPIRAREAHIQMKAAALRGANNNLFGLDG
FT                   NVGTTVENTERHTTEDVNRNMHNLLGVKGL"
FT   mat_peptide     <1..601
FT                   /product="NIb"
FT   mat_peptide     602..1465
FT                   /product="CP"
FT   3'UTR           1469..1677
XX
SQ   Sequence 1677 BP; 514 A; 339 C; 440 G; 384 T; 0 other;
     ggacaacacg ctcatggtta tcctggcagt caactattca ctcaagaaaa gtggaattcc        60
     aagtgagttg cgcgacagca ttgtcaagtt cttcgtcaac ggagatgatt tactgctaag       120
     cgtacaccca gagtatgagt acatccttga cactatggca gacaactttc gtgaactggg       180
     cctgaaatat actttcgact caaggaccag ggaaaaagga gacctttggt ttatgtcaca       240
     ccaagggcac aaaagagagg gaatctggat tcccaagctc gagccagagc gaatagtatc       300
     gattctagag tgggatcggt cgaaagagcc atgccatcga ctagaggcaa tctgcgcagc       360
     gatgattgag tcgtggggtt acgacaagtt aactcacgaa atacgcaggt tttacgcgtg       420
     gatgattgaa caagctccat ttagctccct agcacaagaa gggaaagctc cttacatagc       480
     ggaaacagcg ctgaggaagc tctacattga taaggaacca gctcaagagg atctcaccca       540
     gtacttgcaa gcgatcttcg aggattatga agatggtgct gaggtttgtg tttatcacca       600
     ggcaggtgag acgcttgatg caggtttgac agacgagcaa aagcaggcag agaaggagaa       660
     gaaggagaga gagagggcag aaaaggaacg agagaagcag aagcagttag cactcaagaa       720
     aggcaaggat gttgcacaag aagagggaaa acgcgataag gaagtaaacg ctggaacatc       780
     tggtactttc agtgtaccca gacttaagag tctaacaagc aagatgcgcg tgccaagata       840
     cgagcaaaga gtggctctaa acctcgatca tttaatccta tacacgccgg agcagacgga       900
     tctatccaac acacgttcaa cgcgaaagca gttcgacaca tggtttgaag gtgtgatggc       960
     tgattacgaa ctgacggagg acaaaatgca aattattctc aatggcttaa tggtctggtg      1020
     cattgagaac ggaacctccc cgaacataaa cggaatgtgg gtgatgatgg acggcgatga      1080
     tcaggtggaa ttcccgatca agccgctcat tgaccacgcc aaacccacat ttaggcagat      1140
     aatggcccat ttcagtgacg tagctgaagc gtacattgaa aagcgtaacc aagaccgacc      1200
     atacatgcca cgatatggtc ttcagcgcaa tctaaccgac atgagcttgg ctcgatacgc      1260
     gtttgatttc tatgaaatga cttctagaac tccaatacgt gcgagagaag cacacatcca      1320
     gatgaaagca gcagcactgc gtggcgcaaa taacaatttg ttcggcttgg atggaaacgt      1380
     tggtacaacg gtagagaaca cggagaggca tacgaccgag gacgttaatc ggaacatgca      1440
     taacttactt ggcgttaagg ggttatgaag ttgtatgctg gtagactata agtatttaag      1500
     tttactcgtt agtattctcg cttatgggaa atatgtaagt ttgttaaagc agccagtgtg      1560
     actctgtcat gtgtgttgtt gttactttct atattttcgc cgaacatttt attggtgtta      1620
     gcgcatgtgg tgaggatcgt cctcgattgc cttaacattt gataggatgc aagggac         1677
//