ID   DQ925456; SV 1; linear; genomic RNA; STD; VRL; 1588 BP.
XX
AC   DQ925456;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Shallot yellow stripe virus isolate SYSV-VN/S1 polyprotein gene, partial
DE   cds.
XX
KW   .
XX
OS   Shallot yellow stripe virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1588
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1588
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 9230a27a6fa500456b8311a064f5f8f9.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1588
FT                   /organism="Shallot yellow stripe virus"
FT                   /host="Shallot (Allium ascalonicum)"
FT                   /isolate="SYSV-VN/S1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hue"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1083"
FT                   /db_xref="taxon:62059"
FT   CDS             <1..1393
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP58"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP58"
FT                   /protein_id="ABL09431.1"
FT                   /translation="STVVDNTLMVMLSVQYTLLKNDVKFMEQESIIRYFCNGDDLLIAI
FT                   HPDYSHILDSFTKHFADLGLEYDFSSRTTNREELYFMSHRGLSRDGVYIPKLDKERIVS
FT                   ILEWDRAKEPEHRLEAICAAMVEAWGYDELLHEIRLFYQWVLEQAPYNLIAQTGKAPYI
FT                   AETALKRLYMNEQATESELEKYSRLYQILDEQIPTPSYVSYQASETEDAANVNTDKQVG
FT                   KNKDKDRDVDVGTSGEFSVPKVKMLSDKMRLPRVGKKVILNGKHLLSYKPDQVDLYNTR
FT                   ATHAQFKTWYDAVKLEYELTDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEY
FT                   PLSPIIDNAKPTFRQIMAHFSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDF
FT                   YEMNSKTPIRAKEAHMQMKAAAVRGVANRMFGLDGNISTDDENTERHTAADVNKDHHTL
FT                   LGLRM"
FT   mat_peptide     <1..616
FT                   /product="NIb"
FT   mat_peptide     617..1390
FT                   /product="CP"
FT   3'UTR           1394..1588
XX
SQ   Sequence 1588 BP; 543 A; 294 C; 357 G; 394 T; 0 other;
     ttctacagtg gtggacaata cattaatggt aatgcttagt gttcaataca cattattaaa        60
     gaatgatgtc aaattcatgg aacaagaatc tatcatcaga tacttttgta atggtgatga       120
     tcttcttatc gcaattcatc cagactatag tcacatacta gattcgttca cgaagcattt       180
     cgctgacttg ggtcttgaat atgacttttc gagtcgaacc acaaatcgag aagaattgta       240
     cttcatgtct cacagaggct tatcaagaga tggtgtttat atacccaaac tcgataaaga       300
     acgcatagtt tcaatacttg agtgggacag agctaaggag ccagaacatc gactggaagc       360
     tatttgcgcc gccatggttg aagcgtgggg atatgacgaa ttactacatg agataagatt       420
     attttatcaa tgggttttgg agcaagcacc atacaactta atagcacaga ctggaaaggc       480
     accatacata gcagaaacgg cactaaaacg actgtatatg aatgaacaag caacagaaag       540
     tgagctagaa aagtacagtc gactctatca aatcctggac gagcaaatac caacaccaag       600
     ttatgtgtca taccaagcat cagaaacaga agatgctgca aatgtaaaca ccgacaagca       660
     agttgggaag aataaagaca aggacagaga tgttgatgtt ggcacatcag gcgagttttc       720
     agtaccgaag gtgaagatgt tatcagacaa aatgcgacta ccacgagtcg ggaagaaggt       780
     gatacttaac ggtaaacatc ttctctcgta caagcctgat caagtcgatt tgtacaatac       840
     aagggcaaca catgcacaat tcaaaacatg gtacgatgca gttaaactcg aatatgaatt       900
     aacagatgaa caaatgaaaa tagttatgaa tgggttgatg gtatggtgta tcgagaatgg       960
     cacatcacag aacttgacgg gggtttggac gatgatggac ggcgataacc agatggaata      1020
     tccactcagc cccattattg acaacgcaaa gcccacattc agacaaataa tggcacattt      1080
     cagtgacgca gctgaagcgt acattgaata cagaaatgcc acggaaaaat acatgccccg      1140
     gtatggactt cagcgaaact taagagaata cagcttagca cgttacgcat tcgactttta      1200
     tgagatgaat tcaaagacgc cgatccgcgc gaaggaagct catatgcaga tgaaagcagc      1260
     agcggttaga ggggtagcta accgtatgtt tggcttggat ggtaacataa gcaccgatga      1320
     tgagaacaca gaacggcata cagcagcaga tgtgaataag gatcatcaca cgctgctcgg      1380
     tcttcgtatg taacaaacat atatatattt aatatatagt gtcgtacatt atctttcgtt      1440
     atatttgaat atgagcaaac atagcgtggt tgaaccaccg tttgtggcat agtatatgat      1500
     ataacttcgc tagcattatt tgcaccatga gacttagtgt ggtcatacca cgggaagagt      1560
     caagtgttgt acgttttgtt agggagac                                         1588
//