ID   DQ925434; SV 1; linear; genomic RNA; STD; VRL; 1813 BP.
XX
AC   DQ925434;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sorghum mosaic virus isolate SrMV-VN/SC6 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1813
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1813
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; ce4b7d41909b73a75b564cdf49cd99f0.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1813
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SrMV-VN/SC6"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hatay"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1191"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1576
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP36"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP36"
FT                   /protein_id="ABL09409.1"
FT                   /translation="DNTLMVIIAFNYTMLSCGIEADMIDEICKMYANGDDLLLAIRPDY
FT                   EHLLNDFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKLEQERIVAILEW
FT                   DRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPSATLAKEGLAPYIAETA
FT                   LRNLYTGAGIKEGELDVYYTQFIRDLPEYVEDELIDVFHQAGGGTVDAGANTTDATAQA
FT                   QREAAAKAQRDADAKKRADDEAAERQRQDAAAKKKADDDAKAKADADAKKKADDEAAQR
FT                   AQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGYKPQQQDISNTR
FT                   ATRAEFDRWYAAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNFNGAWTMMDGEEQRTF
FT                   PLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYTFDF
FT                   YEITSRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHTAGDVSRNMHTL
FT                   LGVQQHH"
FT   mat_peptide     <1..502
FT                   /product="NIb"
FT   mat_peptide     503..1573
FT                   /product="CP"
XX
SQ   Sequence 1813 BP; 591 A; 358 C; 436 G; 428 T; 0 other;
     tgacaatacg ctaatggtga tcatagcttt caattatacg atgctatctt gcgggataga        60
     agcagatatg atagatgaga tatgcaaaat gtatgcgaat ggagacgatc ttttactagc       120
     catccgacca gattacgaac acctgctgaa tgatttttct aaacacttct ctgatctagg       180
     attaaacttt gatttcacat cgcgaactag agatagagaa gaactatggt ttatgtcaac       240
     acgaggtatc aaaatcgatg gaatgtacat cccgaaattg gagcaggaaa gaatagttgc       300
     tatattagag tgggacagat cattgttgcc tcaatataga ttagaagcta tatgtgccgc       360
     tatggtggaa gcttggggat atccacaatt attacatgag atacgaaaat tttatgcctg       420
     gattctcgaa atgcaaccgt ctgctacatt ggcgaaagaa ggactcgctc catacatagc       480
     agagacagct ctacgcaatc tttacacagg agcaggaatc aaagaagggg aactggatgt       540
     ttattataca caatttatta gagacttacc tgagtatgtg gaagatgagc taattgacgt       600
     gtttcatcaa gcaggaggcg gcacggttga tgcgggagct aacacaacag atgcaacggc       660
     acaagcgcag cgagaggctg cagcaaaagc tcaacgggat gccgatgcga aaaagagagc       720
     agatgatgaa gcagcagaga gacagagaca agatgctgct gcaaagaaga aagccgatga       780
     tgatgctaaa gcaaaagcgg atgccgatgc gaaaaagaaa gcagatgatg aagcagcgca       840
     aagagcacaa aatcagaaag ataaagacgt tgatgctgga acgtcaggca cagttacagt       900
     gccaaaactc aaagctatgt ccaagaaaat gcgcttacca caagcaaaag gaaagaatat       960
     tttacatctt gatttcctac ttggatataa gccacaacag caggacatct caaacacacg      1020
     agcaacacga gcagagtttg ataggtggta tgcagccgta caaaaagaat atgaacttga      1080
     tgatacacaa atgacagttg ttatgagtgg actaatggta tggtgcatag aaaatggttg      1140
     ctcaccgaac ttcaatggtg cttggaccat gatggatggg gaagaacaaa gaacatttcc      1200
     tttaaagcca ataattgaaa atgcttctcc aacttttagg cagatcatgc atcactttag      1260
     cgatgcagct gaagcgtata tagaataccg taactcaacg gaacgataca tgccaagata      1320
     cggacttcag cgaaacttga ccgactacag tttagcacgt tatacttttg atttctacga      1380
     gatcacatca cgtacaactg cccgtgctaa ggaggcccac atgcagatga aagccgcagc      1440
     agttcgtggt tcaaacaccc ggatgttcgg cttggatggg aatgtcggcg agtctcagga      1500
     gaataccgag cgtcacactg ctggcgacgt gagtcgcaac atgcacactc ttcttggggt      1560
     gcaacagcac cactgacgtg acggaaaccc tggttgcagt acctaagtat tatatatatt      1620
     ttctatgtga gtgaggccat gcctcgttag tacaatatat atttactttc aaagtattta      1680
     ctattctgca agggagtgag gacgcatcct ccaacctttt agtacgtact ttactagctt      1740
     cgaaccacta gacggacgat ctgttgtgtg gccgcgctac gatgcaggtg ctgcgagtct      1800
     tgtggcaaga gac                                                         1813
//