ID   DQ925433; SV 1; linear; genomic RNA; STD; VRL; 1813 BP.
XX
AC   DQ925433;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sorghum mosaic virus isolate SrMV-VN/SC5 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sorghum mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1813
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1813
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 849e34480de897aa329b9ddc17ae81c3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1813
FT                   /organism="Sorghum mosaic virus"
FT                   /host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SrMV-VN/SC5"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hoabinh"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1129"
FT                   /db_xref="taxon:32619"
FT   CDS             <1..1576
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP35"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP35"
FT                   /protein_id="ABL09408.1"
FT                   /translation="DNTLMVIIAFNYTMLSRGIEADMIDEICKMYANGGDLLLAIRPDY
FT                   EHLLDDFSKHFSDLGLNFDFTSRTRDREELWFMSTRGIKIDGMYIPKLEQERIVAILEW
FT                   DRSLLPQYRLEAICAAMVEAWGYPQLLHEIRKFYAWILEMQPFATLAKGGLAPYIAETA
FT                   LRNLYAGVGIKEGELDVYYTQFIRDLPEYVEDELIDVFHQAGGGTVDAGANTTDATAQA
FT                   QREAAAKAQQDADAKKRADDEAAEKQRQDAAAKKKADDDAKAKADADAKKKADDEAAQR
FT                   AQNQKDKDVDAGTSGTVTVPKLKAMSKKMRLPQAKGKNILHLDFLLGYKPQQQDISNTR
FT                   ATRAEFDRWYAAVQKEYELDDTQMTVVMSGLMVWCIENGCSPNINGVWTMMDGEEQRTF
FT                   PLKPIIENASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDL
FT                   YEIASRTTARAKEAHMQMKAAAVRGSNTRMFGLDGNVGESQENTERHTAGDVSRNMHTL
FT                   LGVQQHH"
FT   mat_peptide     <1..601
FT                   /product="NIb"
FT   mat_peptide     602..1573
FT                   /product="CP"
FT   3'UTR           1577..1813
XX
SQ   Sequence 1813 BP; 585 A; 360 C; 441 G; 427 T; 0 other;
     tgacaatacg ctaatggtga tcatagcttt caattacacg atgctatctc gcgggattga        60
     agcagatatg atagatgaga tatgcaaaat gtatgcgaat ggaggcgatc ttttactagc       120
     catccgacca gattacgaac acctgttgga tgatttttct aaacacttct ctgatctagg       180
     attaaacttt gatttcacat cgcgaactag agatagagaa gaactatggt ttatgtcaac       240
     acgaggtatc aaaatcgatg gaatgtacat cccgaaattg gagcaggaaa gaatagttgc       300
     tatattagag tgggacagat cattgttgcc tcaatataga ttagaagcta tatgtgccgc       360
     catggtggaa gcttggggat atccacaatt attacatgag atacgaaaat tttatgcctg       420
     gattctcgaa atgcaaccat ttgccacact ggcgaaagga ggactcgctc catacatagc       480
     agagacagct ctacgcaatc tttacgcagg agtaggaatc aaggaagggg aattggatgt       540
     ttattataca caatttatta gagacttacc tgagtatgtg gaagatgagc taattgacgt       600
     gtttcatcaa gcaggaggcg gcacggttga tgcgggagct aacacaacag atgcaacggc       660
     acaagcgcag cgagaagctg cagcaaaggc tcaacaggat gccgatgcga aaaagagagc       720
     agatgatgaa gcagcagaga aacagagaca agatgctgct gcaaagaaga aagctgatga       780
     tgatgctaaa gcaaaagcgg atgccgatgc gaaaaagaaa gcagatgacg aagcagcgca       840
     aagagcacaa aatcagaaag ataaagacgt tgatgctgga acgtcaggca cagttacagt       900
     accaaaactc aaagctatgt ccaagaagat gcgcttgcca caagcaaaag gaaagaatat       960
     tttacatctc gatttcctac ttggatataa gccacaacag caagacatct caaacacacg      1020
     agcaacacga gcagagtttg ataggtggta tgcagccgta caaaaggaat atgaacttga      1080
     tgatacacaa atgacagttg ttatgagtgg actaatggta tggtgcatag aaaatggttg      1140
     ctcaccgaac atcaatggtg tttggaccat gatggatggg gaagaacaaa gaacatttcc      1200
     tttaaagcca ataattgaaa atgcttctcc aacttttagg cagatcatgc atcactttag      1260
     cgatgcagct gaagcgtata tagaataccg taactcaacg gaacgctaca tgccaagata      1320
     cggacttcag cgaaacttga ccgactacag tttagcacgt tatgcttttg atctctacga      1380
     gatcgcatca cgtacaactg cccgtgctaa ggaggcccac atgcagatga aagccgcagc      1440
     agttcgtggt tcaaacaccc ggatgttcgg cttggatggg aatgtcggcg agtctcagga      1500
     gaatactgag cgtcacactg ctggcgacgt gagtcgcaac atgcacactc ttcttggggt      1560
     gcaacagcac cactgacgtg acggaaaccc tggttgcagt acctaagtat tatatatatc      1620
     ttctatgtga gtgaggccat gcctcgttag tacaatatat atttactttc aaagtattta      1680
     ctattctgca agggagtgag gacgcatcct ccaacctttt agtacgtact ttactagctt      1740
     cgaaccacta gacggacgat ctgttgtgtg gccgtgctac gatgcaggtg ctgcgagtct      1800
     tgtggcaaga gac                                                         1813
//