ID   DQ925432; SV 1; linear; genomic RNA; STD; VRL; 1786 BP.
XX
AC   DQ925432;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/AR1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1786
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1786
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 919c014e8e68cc671bffc82452d6d4b8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1786
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Arrowroot (Maranta arundinacea)"
FT                   /isolate="SCMV-VN/AR1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hanoi"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1275"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP34"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP34"
FT                   /protein_id="ABL09407.1"
FT                   /translation="DNTLMVILAFNYAMSSSGIQEDEIDNCCKMFANGDDLLLAVHPDY
FT                   EHILDGFQNHSGNLGLNFEFTSRTKEKSDLWFMSTRGIKCEGVYIPKLEKERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYPDLVQEIRKFYAWLLEMQPFADLAKEGLAPYIAETA
FT                   LRNLYLGTGIKEEEIEKYFKQFAKDLPGYIEDYNEDVFHQSGSIDAGTQGGDGGSGAPP
FT                   PAASSGTGTRPSNAGSSAQGNTPPASGGFSGNGSGNQAGSSGAGNQAGFNGIGNQWDKD
FT                   VDAGTVGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDR
FT                   WYDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGEEQRVFPLKPVIEN
FT                   ASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEITSRAP
FT                   ARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1786
XX
SQ   Sequence 1786 BP; 556 A; 360 C; 441 G; 429 T; 0 other;
     tgataacaca ctcatggtca ttttagcatt taattatgca atgtcgtcaa gtgggattca        60
     agaagatgaa attgataact gctgtaaaat gtttgccaat ggtgacgact tactccttgc       120
     agtgcatcca gattatgaac acatattaga tggattccaa aatcattctg gaaacctagg       180
     tttgaatttt gaattcacat cacgaactaa ggagaagtca gacttgtggt tcatgtcaac       240
     gcgaggcata aagtgtgaag gcgtctacat acctaagctg gaaaaagaaa gaattgtcgc       300
     catacttgaa tgggatcggt ccaacttacc tgagcatcgc ctggaagcta tatgcgcagc       360
     aatggttgaa gcatggggat atcctgacct tgtacaagaa atacgtaaat tttacgcatg       420
     gctcttggaa atgcaaccct ttgcagacct agcaaaagaa ggcttagcgc catacattgc       480
     agaaacagcg cttcggaatc tttacctcgg aacgggcatt aaggaggaag aaattgagaa       540
     atatttcaaa cagtttgcta aggacctccc tggatatatt gaggactaca atgaagatgt       600
     ctttcatcag tcaggatcca tagatgcagg aacacaagga ggagatggtg gctctggagc       660
     tccaccgcca gcagcaagca gtggaacagg gacgaggccg tcaaacgctg gctcttcagc       720
     acaaggcaat acacctccag cttcaggtgg attttctgga aatggaagtg gaaatcaagc       780
     tggatcaagc ggagctggaa atcaagcagg atttaacgga attggaaatc aatgggacaa       840
     agatgtagat gctggcacag taggaaaaat ttcagtacca aagcttaaag ctatgtctaa       900
     gaaaatgcgt ctaccaaaag caaaaggaaa ggatgtcttg cacctggact tcttgttaac       960
     atacaaacca caacagcaag acatatcgaa cacaagagca accaaggaag agttcgatag      1020
     gtggtacgat gccataaaga aggagtacga gattgatgat acacaaatga cggttgtcat      1080
     gagtggcctg atggtctggt gcattgaaaa tggttgctca ccaaacataa acggaaattg      1140
     gacgatgatg gatggagaag aacaaagggt tttcccactg aaaccagtca ttgaaaatgc      1200
     atccccaact ttccgacaaa taatgcatca ttttagtgat gcagctgaag cgtacattga      1260
     gtataggaac tccacagagc gatacatgcc aagatacggg cttcagcgaa atctcaccga      1320
     ctatagctta gcacggtatg catttgattt ttacgaaatc acttcacgcg cacctgctag      1380
     agctaaagaa gcccacatgc agatgaaagc cgcagcagtt cgtggttcta acacacgatt      1440
     gttcggtctg gacggaaatg tcggcgagac tcaggagaat acagagagac acacagctgg      1500
     cgatgttagt cgtaatatgc actctctgtt gggagtgcag cagcaccact agtctcctgg      1560
     aaaccctgtt tgcagtacct ataatatata ctaatatata gtatgctggt gaggctgtgc      1620
     ctcgtttact attttattgc gtatgtattt caagcgtgaa ccagtctgca gcacacaggg      1680
     tttgacccag tgtgttctgg tgtagcgtgt actagcgtcg ggccacgtga cggacagcac      1740
     tgggagtggc tttgccattg gtgctgcgag tctcttggtg agagac                     1786
//