ID   DQ925431; SV 1; linear; genomic RNA; STD; VRL; 1788 BP.
XX
AC   DQ925431;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/SC1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1788
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1788
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; fa737245bd265d981bd22c4924b7794e.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1788
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SCMV-VN/SC1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Yenbai"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1244"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP33"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP33"
FT                   /protein_id="ABL09406.1"
FT                   /translation="DNTLMVIVAFNYAMLSSGIPEDKIDDCCRMFANGDDLLLAVHPDY
FT                   EYILDGFQNHFGNLGLNFEFTSRTKDKSELWFMSTQGVRCEGIYIPKLERERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYPDSVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETA
FT                   LRNLYLGTGIKEEEIEKYFRQFVKDLPGYVEDYNEEVIHQSGQVDAGRQGGSGAQGGTP
FT                   PAGSGGTGSGTQGNGGQTGFQGSGGQQGSGGGTGQGAAGNNGGGQTGGSSGTAGQRDKD
FT                   VDAGSAGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDR
FT                   WYDAIKKEYEIDDTQMTVVMSGLMAWCIENGCSPNIDGNWTMMDGDEQRVFPLKPVIEN
FT                   ASPTFRQVMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTP
FT                   ARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGNISRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1788
XX
SQ   Sequence 1788 BP; 539 A; 365 C; 467 G; 417 T; 0 other;
     tgacaacacg cttatggtta ttgtagcatt taattacgca atgttatcaa gtggcattcc        60
     cgaagacaaa attgacgact gctgtagaat gtttgcaaac ggtgacgact tactcttggc       120
     agtgcatccg gattacgaat atatactgga cggatttcaa aatcattttg gaaaccttgg       180
     ccttaacttt gagttcacat cgaggacaaa ggataaatca gagttatggt ttatgtcaac       240
     acaaggagtc aggtgtgaag gtatctacat accaaaactc gaaagggaaa gaatagtcgc       300
     aatccttgaa tgggaccgat cgaacttgcc tgagcatcgt cttgaagcta tctgtgcagc       360
     catggttgaa gcatggggtt acccagattc agttcatgaa attcgtaagt tttacgcgtg       420
     gcttcttgaa atgcaaccct tcgcgaacct ggcaaaggaa ggcatggcgc catacatagc       480
     agaaacagca ctccgcaacc tctaccttgg aacaggcatc aaagaagaag aaattgaaaa       540
     atattttaga cagtttgtca aggatcttcc tggatacgta gaagattaca atgaagaagt       600
     tattcatcaa tctggtcaag ttgacgcagg gagacagggc ggtagcggcg ctcaaggagg       660
     cacaccacca gcaggaagtg gaggcactgg atctggcact caaggcaatg ggggtcagac       720
     gggattccaa ggaagtggtg gtcaacaagg gtccggtggg ggcactggtc aaggagcagc       780
     tggaaacaac ggcggaggtc agacaggagg ctctagtggg acagctggtc agagagataa       840
     ggacgttgac gcaggctcgg ctggaaagat atccgtgcca aagcttaaag ccatgtcaaa       900
     gaaaatgcgc ttgccaaagg caaaaggaaa agacgtcttg cacttggact ttttgttgac       960
     atataagcca caacagcagg acatatcgaa cacaagagca actaaggaag agttcgatag      1020
     atggtacgac gccataaaga aggagtacga gatcgatgat acacaaatga cagtcgtcat      1080
     gagtggtctg atggcctggt gcatcgaaaa tggttgctca ccaaacatag atggaaattg      1140
     gacgatgatg gatggggatg aacaaagagt tttcccacta aaaccagtta ttgaaaacgc      1200
     atctccaact tttcgacaag ttatgcatca tttcagtgat gcagctgaag cgtatataga      1260
     atacagaaat tctactgagc gatacatgcc aagatatgga cttcagcgaa atctcaccga      1320
     ctatagctta gcgcggtatg cttttgattt ctatgaaatg acttcacgca caccagctag      1380
     agctaaggaa gcccacatgc agatgaaagc cgcagcagtt cgtggttcaa acacacgact      1440
     gttcggcttg gacggaaatg tcggcgagac tcaggagaat acagagagac acacagctgg      1500
     caacattagt cgcaatatgc actctctgtt gggagtgcag caacaccact agtctcctgg      1560
     aaaccctgtt tgcagtacct ataatatata ctaatatata gtacgttggt gaggctttgc      1620
     ctcggtttta ctatcttatt acgtatgtat ttacagcgtg aaccagtctg cagcatgcag      1680
     ggttggaccc agcgtgttct ggtgtagcgt gtactagcgt cgagccatga gacggactgc      1740
     actgggtgtg gctgtgccac ttgtgctgcg agtctcttgg tgagagac                   1788
//