ID   DQ925430; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   DQ925430;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/SC3 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1785
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1785
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; 1a48aa2f44b5fabe36a77dbb8e5eea48.
DR   EuropePMC; PMC5461048; 28592948.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1785
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SCMV-VN/SC3"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Bacgiang"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1221"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP32"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP32"
FT                   /protein_id="ABL09405.1"
FT                   /translation="DNTLMVILAFNYAMLSSGIQEAEIDNCCRMFANGDDLLLAVHPDF
FT                   EYILDGFQNHFSNLGLNFDFTSRTKEKSDLWFMSTRGIKCENIYIPKLEKERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYQDLIHEIRKFYAWLLEMQPFANLAKDGLAPYVAETA
FT                   LRNLYIGTGIKEEEIEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGATGGSAAGSGGS
FT                   PPASGATAPAASGTPPATGAAATATGSAQPASGGSPPSIGSGAGTQADANSANAQKDKD
FT                   VDAGTTGALSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDISNTRATREEFDR
FT                   WYEAIQREYEINETQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPVIEN
FT                   ASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRSLTDYSLARYAFDFYEMTSRTP
FT                   ARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1785
XX
SQ   Sequence 1785 BP; 552 A; 368 C; 433 G; 432 T; 0 other;
     cgacaataca ctaatggtga tcttagcttt caattatgca atgttatcga gtggaattca        60
     agaagctgaa attgataatt gttgcagaat gtttgcaaat ggtgatgatt tactcttagc       120
     agtacatcct gattttgaat atattttaga tggattccaa aatcatttca gcaaccttgg       180
     tttgaatttt gattttacat ctcgaacaaa ggaaaaatct gatttatggt tcatgtcaac       240
     aaggggaata aaatgcgaaa acatctatat acccaaactt gagaaggagc gtatagtcgc       300
     catacttgaa tgggatcgat cgaacttacc tgaacaccga ctcgaagcca tttgtgcagc       360
     tatggtagag gcgtggggct atcaagacct tattcacgag attcggaagt tttacgcgtg       420
     gttgttggaa atgcaacctt tcgcaaatct agcaaaagat ggtttagctc catacgttgc       480
     ggagacagct ctacgtaact tgtacattgg aacaggcata aaggaggagg aaattgagaa       540
     atattataaa cagttcgcca aggatctgcc aggatactta gaagattaca atgaagatgt       600
     tgtccatcaa gcaggcactg ttgatgctgg cgcaacggga gggagtgcag ctggttctgg       660
     aggttcacct ccagcaagtg gtgcgacagc acccgcggca agtgggactc caccagctac       720
     tggagcagcc gcaacagcta caggatctgc gcaacctgcc tcagggggaa gtcctccctc       780
     cattggatca ggggctggaa cacaagctga cgcgaattca gccaacgcac aaaaagataa       840
     agatgtggac gctggtacaa caggagcatt atcagtaccg aagctcaaag ccatgtcaaa       900
     gaaaatgaga ttacccaagg caaagggtag cgacatcttg cacttggatt tcttacttaa       960
     gtataaacca caacagcaag atatatcaaa cacaagagca accagagagg agttcgacag      1020
     atggtacgaa gccatacaaa gagaatacga aatcaatgaa acacaaatga aaatcattat      1080
     gagtggttta atggtgtggt gcattgagaa tggttgctca ccaaatataa acggaagttg      1140
     gaccatgatg gatggagatg aacaaagggt ttttccctta aaaccagtta tcgaaaatgc      1200
     atcaccaacg ttccgacaaa taatgcatca cttcagtgat gctgctgaag catacatcga      1260
     atatagaaac tcaactgaga gatatatgcc aagatatgga cttcagcgaa gtctcaccga      1320
     ctatagcctg gcgcggtatg catttgattt ttacgaaatg acatcacgaa caccagccag      1380
     ggctaaggaa gcccacatgc agatgaaagc cgcagcagtc cgtggttcaa acactcgact      1440
     gttcggtctg gacggaaatg tcggcgagac tcaggagaat acagagagac acacagctgg      1500
     cgacgttagt cgtaatatgc actctctgtt gggagtgcag cagcaccact aatctcctgg      1560
     aaaccctgtt tgcagtacct atagtatgtt ctgtgtacta gtataaaagt gaggctctgc      1620
     ctcgttccta cttttactgt ttacgtacta taagtgtgaa ccagtctgca agatacaggg      1680
     ttggacccag tgtcttctgg tgtagcacgt actagcgtcg agccatgtca cggacagcac      1740
     tggggtggct tcgccatgtg tgctgcgagt ctcttggtga gagac                      1785
//