ID   DQ925429; SV 1; linear; genomic RNA; STD; VRL; 1788 BP.
XX
AC   DQ925429;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/M2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1788
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1788
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; cf75fb27994523572d40699b8c6b7b94.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1788
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Maize (Zea mays)"
FT                   /isolate="SCMV-VN/M2"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hatay"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1188"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP31"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP31"
FT                   /protein_id="ABL09404.1"
FT                   /translation="DNTLMVIIAFNYAMLSSGIPEDNIDDCCRMFANGDDLLLAVHPDY
FT                   EYILDGFQNHFGNLGLNFEFTSRTKDKSELWFMSTQGVKCEGIYIPKLERERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETA
FT                   LRNLYLGTGIKEEEIEKYFRQFVKDLPGYVDGYNEEVIHQSGQVDAGRQGGSGAQGGTP
FT                   SAGSGGTGSGTQGNGGQTGSQGGGGQQGSGGGTGQGAAGNNGGGQTGGSSGTAGQRDKD
FT                   VDAGSAGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDR
FT                   WYDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWAMMDGDEQRVFPLKPVIEN
FT                   ASPTFRQVMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTP
FT                   ARAKEARVQMKAAAVRGSNTRLFGLDGNVGETQQNTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1788
XX
SQ   Sequence 1788 BP; 534 A; 369 C; 471 G; 414 T; 0 other;
     tgacaacacg cttatggtta ttatagcatt taattacgca atgttatcaa gtggcattcc        60
     tgaagacaat attgacgact gctgtagaat gtttgcaaac ggtgacgact tactcttggc       120
     agtgcatccg gattacgaat atatattgga cggatttcaa aatcattttg gaaaccttgg       180
     ccttaacttt gagttcacat cgaggacaaa ggacaaatca gagttatggt tcatgtcaac       240
     acaaggagtc aagtgtgaag gtatctacat accaaaactc gaaagggaaa gaatagtcgc       300
     aatccttgaa tgggaccgat cgaacttgcc tgagcatcgt cttgaagcta tctgtgcagc       360
     catggttgaa gcatggggtt acccagattt agttcatgaa attcgaaagt tttacgcgtg       420
     gcttcttgaa atgcaaccct tcgcgaacct ggcaaaggaa ggcatggcgc catacatagc       480
     agagacagca ctccgcaacc tctaccttgg aacaggcatc aaagaagaag aaattgaaaa       540
     atattttaga cagtttgtca aggatctccc tggatacgta gatggttaca atgaagaagt       600
     tattcatcaa tctggtcaag ttgacgcagg gagacagggc ggtagcggcg ctcaaggagg       660
     cacaccatca gcaggaagtg gaggcactgg atctggcact caaggcaatg ggggtcagac       720
     gggatcccaa ggaggtggtg gtcaacaagg gtccggtggg ggcactggtc aaggagcagc       780
     tggaaacaac ggcggaggtc agacaggagg ctctagtggg acagctggtc agagagataa       840
     ggacgttgac gcaggctcgg ctggaaagat atccgtacca aagcttaaag ccatgtcaaa       900
     gaaaatgcgc ttgccaaagg caaaaggaaa agacgtcttg catttggact ttttgttgac       960
     atacaagcca caacagcagg acatatcgaa cacaagagca actaaggaag agttcgatag      1020
     atggtacgac gccataaaga aggagtacga gatcgatgac acacaaatga cagtcgtcat      1080
     gagtggtctg atggtctggt gcatcgaaaa tggttgctca ccaaacataa acggaaattg      1140
     ggcgatgatg gatggggatg aacaaagagt tttcccacta aaaccagtta ttgaaaacgc      1200
     atctccaact tttcgacaag ttatgcatca tttcagtgat gcagctgaag cgtatataga      1260
     atacagaaat tctactgagc gatacatgcc aagatatgga cttcagcgaa acctcaccga      1320
     ctatagctta gcgcggtatg cttttgattt ctatgaaatg acttcacgca caccagctag      1380
     agctaaggaa gcccgcgtgc agatgaaagc cgcagcagtt cgtggttcaa acacacggct      1440
     gttcggcttg gacggaaatg tcggcgagac tcagcagaat acagagagac acacagctgg      1500
     cgacgttagt cgcaatatgc actctctgtt gggagtgcag caacaccact agtctcctgg      1560
     aaaccctgtt tgcagtacct ataatatata ctaatatata gcacgttggt gaggctttgc      1620
     ctcggtttta ctatcttatt acgtatgtat ttacagcgtg aaccagtctg cagcatgcag      1680
     ggttggaccc agcgtgttct ggtgtagcgt gtactagcgt cgagccatga gacggactgc      1740
     actgggtgtg gctatgccac tggtgctgcg agtctcttgg tgagagac                   1788
//