ID   DQ925428; SV 1; linear; genomic RNA; STD; VRL; 1807 BP.
XX
AC   DQ925428;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/SC4 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1807
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1807
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; beeed09bad874d0758d7a79377fa0118.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1807
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SCMV-VN/SC4"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hanoi"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1174"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP30"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP30"
FT                   /protein_id="ABL09403.1"
FT                   /translation="DNTLMVILAFNYAMLSSGVQEDEIDNCCRMFANGDDLLLAVHPDF
FT                   EYILDGFTNHFSNLGLNFDFTSRTRDKSDLWFMSTRGIKCENIYIPKLEKERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYQDLIHEIRKFYAWLLEMQPFANLAKGGLAPYIAETA
FT                   LRNLYIGAGIKEEEIEKYYKQFAKDLPGYLEDFNEDVFHQAGTVDAGATGGGTTGSGNP
FT                   PSTGGVTAPAASGTPPATGAAATAIGSAQPASGGSPPSTGSGSGSQADANSANAQKDKD
FT                   VDAGTTGTLSVPKLKAMSKKMRLPKAKGSDILHLDFLLKYKPQQQDISNTRATREEFDR
FT                   WYEAIQREYEINDTQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPVIEN
FT                   ASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRDLTDYSLARYAFDFYEMTSRTP
FT                   ARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1807
XX
SQ   Sequence 1807 BP; 547 A; 382 C; 437 G; 441 T; 0 other;
     tgataataca ctaatggtaa tcctagcttt taactacgct atgttgtcga gtggagtcca        60
     agaagacgag atcgacaatt gttgtagaat gtttgcaaac ggtgacgatt tactcctagc       120
     agtgcatcct gatttcgagt acattttaga tgggtttacg aatcacttca gtaacctcgg       180
     tttaaacttc gatttcacat ctcgaacaag agataaatct gatttgtggt tcatgtcaac       240
     aagagggatt aaatgcgaaa acatctacat acccaaactt gagaaggagc gtatagttgc       300
     catacttgaa tgggatcgat caaatttacc tgaacatcga cttgaagcga tttgcgcagc       360
     tatggtggaa gcatggggtt accaagatct tattcatgag atccggaaat tttacgcatg       420
     gctgcttgaa atgcaaccct ttgccaatct tgctaaaggt ggcttggctc catacattgc       480
     agaaacagct ttgcgcaatt tgtacattgg agcaggcata aaggaagagg agatcgaaaa       540
     atattacaaa caatttgcca aagatctacc aggatatttg gaggatttta atgaagatgt       600
     tttccatcaa gcaggcaccg tcgatgctgg tgcaacggga ggtggtacaa ctggttctgg       660
     aaatccacct tcgacaggtg gtgtaacggc acccgcagcg agtggaactc caccagcaac       720
     tggagcagca gcaaccgcca taggttctgc acaacctgct tcaggaggaa gtcccccatc       780
     aactggatcg ggatctggat cacaggctga tgcaaattca gcaaacgcac agaaagataa       840
     ggacgtggat gctggcacaa caggaacact atcagtgcca aagctcaaag ccatgtcaaa       900
     gaaaatgcga ttacccaaag caaagggtag tgatatcttg catctggact ttctactcaa       960
     gtacaaacca caacagcaag atatatcgaa cacgagagca accagagaag agttcgatag      1020
     atggtacgaa gccatacaaa gagaatatga gattaatgat acacaaatga aaatcattat      1080
     gagtggtctc atggtatggt gcattgaaaa cggttgctca ccaaacataa acggaagttg      1140
     gaccatgatg gatggggacg aacaaagagt cttcccattg aaaccagtca ttgaaaacgc      1200
     atctccaact ttccgacaaa taatgcatca ttttagtgat gcagctgaag cgtatataga      1260
     gtaccgaaac tctacagagc gatacatgcc aagatacggt cttcagcgag atctcaccga      1320
     ctatagctta gcacggtatg cttttgactt ctatgaaatg acttcacgca caccagctag      1380
     agctaaggaa gcccacatgc agatgaaagc cgcagcagtt cgtggttcaa acacacgtct      1440
     gttcggtctg gacggaaatg tcggcgagac ccaggagaat acagagagac acacagctgg      1500
     cgacgttagt cgtaatatgc actctctgtt gggagtgcag cagcaccact agtctcctgg      1560
     aaaccctgtt tgcagtacct atagtatatt actaaatagt atgcttgtga ggctctgccc      1620
     cgcgtgtatg tgaggttgta cctcgtattt actatttcag tatatgtact ttaagcgtgg      1680
     gccagtctgc aggacacagg gttggaccca gtgtcttctg gtgtagcgtg tactagcgtc      1740
     gagccaatgg acggacggca ctgggagtgg ttttaccatt ggtgctgcga gtctcttggt      1800
     gagagac                                                                1807
//