ID   DQ925427; SV 1; linear; genomic RNA; STD; VRL; 1785 BP.
XX
AC   DQ925427;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/SC2 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1785
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1785
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; da45f02535d33ac2faa7afd81ba30318.
DR   EuropePMC; PMC5461048; 28592948.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1785
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Sugarcane (Saccharum officinarum)"
FT                   /isolate="SCMV-VN/SC2"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hoabinh"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2004"
FT                   /note="sample 1125"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP29"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP29"
FT                   /protein_id="ABL09402.1"
FT                   /translation="DNTLMVILAFNYAMLSSGIQEDEIDNCCRMFANGDDLLLAVHPDY
FT                   EYILDGFQNHFSNLGLNFDFTSRTKEKSDLWFMSTRGIKCENTYIPKLEKERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYPDLIHEIRKFYAWLLEMQPFANLAKDGLAPYIAETA
FT                   LRNLYIGTSIKEEEVEKYYKQFAKDLPGYLEDYNEDVVHQAGTVDAGASGGNAAGSGGS
FT                   PPTSGVTAPAVSGTPPATGAAATATGSAQPASGGSPPSTGSGAGAQADANSANAQKIKM
FT                   WTLVQQEHYQYRSSKPCQKKMRLPKAKGSDILHLDFLLKYKPQQQDISNTRATREEFDR
FT                   WYEAIQREYEINDTQMKIIMSGLMVWCIENGCSPNINGSWTMMDGDEQRVFPLKPVIEN
FT                   ASPTFRQIMHHFSDAAEAYIGYRSSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTP
FT                   ARAEEAHMQMEAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1785
XX
SQ   Sequence 1785 BP; 544 A; 374 C; 442 G; 425 T; 0 other;
     cgataatacg ctaatggtaa tcctagcttt caactatgca atgctgtcga gtggaatcca        60
     agaagatgaa atcgacaatt gttgcagaat gtttgcaaac ggtgatgatt tactcttagc       120
     agtgcatcct gattatgagt atattttaga tggattccaa aatcacttca gcaaccttgg       180
     tttgaatttt gacttcacat ctcgaacaaa agagaaatct gatttatggt ttatgtcaac       240
     aagggggata aagtgtgaga acacctatat acctaaactt gagaaagagc gtatagttgc       300
     catacttgaa tgggatcgat caaacctacc tgagcaccgg ctcgaagcca tctgtgcagc       360
     tatggtagag gcgtggggat atccagatct tatccatgag attcggaaat tttacgcgtg       420
     gttgttggaa atgcaacctt tcgcaaatct agcaaaagat ggtttggctc catacattgc       480
     agaaacagct ttacgtaatt tgtacattgg aacaagcata aaggaggagg aggtcgagaa       540
     atattataaa cagttcgcca aagatctacc aggatactta gaggattaca atgaagacgt       600
     tgtccatcaa gcaggcactg tcgatgctgg cgcatcggga gggaatgcag ctggctctgg       660
     aggctcacct ccaacaagcg gtgtgacagc acccgcggta agcggaaccc caccagctac       720
     tggagcagca gcaacagcca caggatctgc gcaacctgct tcagggggaa gtcccccttc       780
     aactggatca ggagctggag cacaagctga tgcaaattca gcaaatgcac aaaagataaa       840
     gatgtggacg ctggtacaac aggagcacta tcagtaccga agctcaaagc catgtcaaaa       900
     gaaaatgcga ttacccaagg cgaagggtag tgacatcttg cacttagatt tcttgctaaa       960
     gtataaacca caacagcaag atatatcgaa cacgagagca actagagagg agttcgatag      1020
     atggtatgaa gccatacaaa gagaatatga aatcaatgac acacaaatga agatcattat      1080
     gagcggctta atggtttggt gcattgaaaa tggttgctca ccaaatataa acggaagttg      1140
     gaccatgatg gatggggatg aacaaagggt tttccctttg aaaccagtta ttgaaaacgc      1200
     atcaccaacg ttccgacaga taatgcatca cttcagtgat gctgctgaag cgtatattgg      1260
     atacaggagc tcaaccgaga gatatatgcc acgatacgga cttcagcgaa atctcaccga      1320
     ctatagctta gcacggtatg cgtttgactt ttacgaaatg acatcacgca caccagctag      1380
     agctgaggaa gcccacatgc agatggaagc cgcagcagtt cgtggttcaa acacacgact      1440
     gttcggtttg gacggaaatg tcggcgagac tcaggagaat acagagagac acacagctgg      1500
     cgacgttagt cgtaatatgc actctctgtt gggagtgcag cagcaccact aatctcctgg      1560
     aaccctgttt gcggtaccta tagtatgtat tatgtattag tgcaacagtg aggctttgcc      1620
     tcgtctctac ttttactatc tgcgtactat aagtgtgaac cagtctgcaa gacgcagggt      1680
     tggacccagt gtcttctggt gtagcacgta ctagcgtcga gccatgtcac ggacagcact      1740
     ggggatggct ttgccatgtg tgctgcgagt ctcttggtga gagac                      1785
//