ID   DQ925426; SV 1; linear; genomic RNA; STD; VRL; 1786 BP.
XX
AC   DQ925426;
XX
DT   30-JUN-2007 (Rel. 92, Created)
DT   06-MAR-2008 (Rel. 95, Last updated, Version 2)
XX
DE   Sugarcane mosaic virus isolate SCMV-VN/M1 polyprotein gene, partial cds.
XX
KW   .
XX
OS   Sugarcane mosaic virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1786
RX   DOI; 10.1007/s00705-007-1067-1.
RX   PUBMED; 17906829.
RA   Ha C., Revill P., Harding R.M., Vu M., Dale J.L.;
RT   "Identification and sequence analysis of potyviruses infecting crops in
RT   Vietnam";
RL   Arch. Virol. 153(1):45-60(2008).
XX
RN   [2]
RP   1-1786
RA   Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.;
RT   ;
RL   Submitted (29-AUG-2006) to the INSDC.
RL   Institute of Health and Biomedical Innovation, Queensland University of
RL   Technology, 2 George Street, Brisbane, Queensland 4001, Australia
XX
DR   MD5; e9a97f810b1ef18ebfe32799fa8bceaa.
DR   EuropePMC; PMC5216416; 28059116.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1786
FT                   /organism="Sugarcane mosaic virus"
FT                   /host="Maize (Zea mays)"
FT                   /isolate="SCMV-VN/M1"
FT                   /mol_type="genomic RNA"
FT                   /country="Viet Nam:Hoabinh"
FT                   /isolation_source="infected plant"
FT                   /collection_date="2000"
FT                   /note="sample 203"
FT                   /db_xref="taxon:12224"
FT   CDS             <1..1552
FT                   /codon_start=2
FT                   /product="polyprotein"
FT                   /db_xref="GOA:A6XP28"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:A6XP28"
FT                   /protein_id="ABL09401.1"
FT                   /translation="DNTLMVIIAFNYAMLSSGIPEDKIDGCCRMFANGDDLLLAVHPDY
FT                   EYILDGFQNHFGNLGLNFEFTSRTKDKSELWFMPTQGVKCEGIYTPKLERERIVAILEW
FT                   DRSNLPEHRLEAICAAMVEAWGYSDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETA
FT                   LRNLYLGTGIKEEEIEEYFKQFIKDLPGYVEDYNEEVIHQSGHVDAGRQGGSGAQGGTP
FT                   PAGSGGTGSGTQGNGGQTGSQGSGGQQGSGGGTGQGAAGSNGGGQTGGSSGTAGQRDKD
FT                   VDAGSAGKISVPKLKAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDR
FT                   WYDAIKKEYEIDDTQMTVVMSGLMVWCIENGCSPNINGNWTMMDGEEQRVFPLKPVIEN
FT                   ASPTFRQIMHHFSDAAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTP
FT                   ARAKEAHMQMKAAAVRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH"
FT   mat_peptide     <1..610
FT                   /product="NIb"
FT   mat_peptide     611..1549
FT                   /product="CP"
FT   3'UTR           1553..1786
XX
SQ   Sequence 1786 BP; 543 A; 368 C; 466 G; 409 T; 0 other;
     tgacaacacg ctcatggtta ttatagcatt taattatgca atgttatcaa gtggcattcc        60
     tgaagacaaa attgacggct gctgtagaat gtttgcaaac ggtgacgact tacttttggc       120
     agtgcatccg gattacgaat atatattgga cggatttcaa aatcactttg gaaacctcgg       180
     ccttaacttc gagttcacat cgaggacaaa ggacaagtca gagttatggt tcatgccaac       240
     acaaggagtc aagtgtgaag gtatctacac accaaaactc gaaagggaaa gaatagtcgc       300
     aatccttgaa tgggaccgat cgaacttgcc tgagcatcgt cttgaagcta tctgtgcagc       360
     catggttgaa gcatggggtt actcagattt agttcatgaa attcgaaagt tttacgcgtg       420
     gcttctcgaa atgcaaccct tcgcgaacct ggcaaaggaa ggcatggcgc catacatagc       480
     agaaacagca ctccgcaacc tttaccttgg aacaggcatc aaagaagaag aaattgaaga       540
     atattttaag cagtttatca aggatcttcc tggatacgta gaagattaca atgaagaagt       600
     tattcatcaa tctggccatg ttgatgcagg gagacaaggc ggtagcggtg ctcaaggagg       660
     cacaccacca gcaggaagtg gaggcactgg atctggcact cagggcaatg ggggtcagac       720
     gggatcccaa ggaagtggtg gtcaacaagg gtccggtggg ggcactggcc aaggagcagc       780
     tggaagcaac ggtggaggcc agacaggagg ctctagcggg acagctggtc aaagagataa       840
     ggatgttgac gcaggctcgg ctggaaagat atccgtacca aagcttaaag ccatgtcaaa       900
     gaaaatgcgc ttgccaaagg caaaaggaaa agatgtcttg catctggact ttttgttgac       960
     atacaagcca caacagcaag atatatcgaa cacaagagca actaaggaag agttcgatag      1020
     atggtacgac gccataaaga aggagtacga gatcgatgat acacaaatga cagttgtcat      1080
     gagtggtctg atggtctggt gcatcgaaaa tggttgctca ccaaatataa acgggaattg      1140
     gacgatgatg gatggagaag aacaacgagt ttttccattg aaaccagtca ttgaaaacgc      1200
     atctccaact ttccgacaaa taatgcacca ctttagtgat gcagctgaag cgtacataga      1260
     gtatagaaac tctacagagc gatatatgcc aagatacgga cttcagcgaa atctcaccga      1320
     ctatagccta gcacggtatg catttgattt ctatgaaatg acctcacgca caccagctag      1380
     agctaaggaa gcccacatgc agatgaaagc cgcagcagtt cgtggttcaa acacacgact      1440
     gttcggtctg gacggaaatg tcggcgagac tcaggagaat acagagagac acacagctgg      1500
     tgacgttagt cgcaacatgc actctctgtt gggagtgcag cagcaccatt agtctcctgg      1560
     aaaccctgtt tgcagtacct ataatatgta ctaatatata gtatgttagt gaggctatgc      1620
     ctcgtttgct attttattac gtacgtattt acagcgtgaa ccagtctgca ggacacaggg      1680
     ttggacccag tgtcttctgg tgtagcgtgt actagcgtcg agccacgtga cggacagcac      1740
     tgggtgtggc tttgccattg gtgctgcgag tctcttggtg agagac                     1786
//