ID DQ902715; SV 1; circular; genomic DNA; STD; VRL; 2792 BP. XX AC DQ902715; XX DT 25-SEP-2006 (Rel. 89, Created) DT 10-AUG-2007 (Rel. 92, Last updated, Version 2) XX DE Okra yellow crinkle virus segment A, complete sequence. XX KW . XX OS Okra yellow crinkle virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2792 RX DOI; 10.1111/j.1365-3059.2007.01599.x. RX AGRICOLA; IND43933445. RA Shih S.L., Green S.K., Tsai W.S., Lee L.M., Levasseur V.; RT "First report of a distinct begomovirus associated with okra yellow crinkle RT disease in Mali"; RL Plant Pathol. 56(4):718-718(2007). XX RN [2] RP 1-2792 RA Shih S.L., Green S.K., Lee L.M., Levasseur V.; RT ; RL Submitted (15-AUG-2006) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, P. O. Box 42, Shanhua, Tainan, RL Taiwan, Republic of China XX DR MD5; 0663b81e7efe68ec33f9b6f6a82435d6. DR EuropePMC; PMC2839976; 20178575. XX FH Key Location/Qualifiers FH FT source 1..2792 FT /organism="Okra yellow crinkle virus" FT /segment="A" FT /mol_type="genomic DNA" FT /country="Mali" FT /clone="MLO1/2004" FT /db_xref="taxon:401040" FT gene 163..513 FT /gene="V2" FT CDS 163..513 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q06F32" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q06F32" FT /protein_id="ABI83655.1" FT /translation="MWDPLVNEFPESVHGFRCMLAIKYLQALEDTYEPNTLGSDLIRDL FT ISVIRAKNYVEATRRYNFFHARLEGSSKAELRQPLHEPCNCPHCPRHKQTSVMDSPANV FT QKAQNVPDVQKP" FT gene 323..1099 FT /gene="V1" FT CDS 323..1099 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q06F31" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q06F31" FT /protein_id="ABI83651.1" FT /translation="MSKRPGDIIFSTPVSKVRRRLNFDSPYTSRATVPTVLGTSKRRSW FT THRPMYRKPRMYRMYRSPDVPRGCEGPCKIQSFDQRDSVTHTGNSRCLSDVTRGNGLTH FT RTGKRFVIKSVYILGKVWMDENVKKSNHTNTCMFRLVRDRRPYGNSPQDFGQVFNMFDN FT EPSTATVMNDKRDRYQVLKRFQATVTGGPSGCKEAAIVRRFFKINHHVTYNHQEAAKYE FT NHTENALLLYMACTHASNPVYASLKIRMYFYDSVSN" FT gene complement(1096..1500) FT /gene="C3" FT CDS complement(1096..1500) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:Q06F30" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q06F30" FT /protein_id="ABI83653.1" FT /translation="MDSRTGELITARQTTNGVFIWETPNPLYFKITRHLIHPFNRPFHI FT IDVQIRFNHNLRKALGIHKCFLNFRVWTTLRPQTGRFLRVFRTQVLKYLNNLGVISINL FT VIRAVAHVLYSVLLNTIDVTESHEIKFDIY" FT gene complement(1241..1648) FT /gene="C2" FT CDS complement(1241..1648) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:Q06F29" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q06F29" FT /protein_id="ABI83652.1" FT /translation="MQHSSPSASHSTQLPIKVQHRIAKKKVVRRRRIDLKCGCSYYLHI FT NCANHGFSHRGTHHCSSDNEWRFYLGDTKSPIFQDYKTPNTPVQPAVSHNRCPNPVQPQ FT PSEGIGDSQVFSQLQGLDDLTASDWSFLKGI" FT gene complement(1557..2636) FT /gene="C1" FT CDS complement(1557..2636) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q06F28" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q06F28" FT /protein_id="ABI83650.1" FT /translation="MPRAGRFSIKAKNYFLTFPKCSLSKEDALGQLKDLQTPTNKKYIK FT ICRELHENGEPHLHVLIQFEGKYNCTNQRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYI FT DKDGDTLEWGEFQVDGRSARGGCQTANDAAAEALNAGSADAAMAIIREKLPKDYIFQYH FT NLKSNLDRIFQAPPEVYVSPFSSSSFNNVPEELEEWAAENVVGAAARPWRPQSIVVEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTASYKEYLEENKNAALKAWAIKNATFITLSEPL FT YSTTDQSPAPHSQEEGSEA" FT gene complement(2222..2485) FT /gene="C4" FT CDS complement(2222..2485) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q06F27" FT /protein_id="ABI83654.1" FT /translation="MRMGNHISMCLSSSRANTTAQISDSSTWSPQVGQHISIRTFRELS FT LARTSSPTSTRTATPWNGESSRSTEEVLGEAARLLTTLQQRH" XX SQ Sequence 2792 BP; 757 A; 581 C; 631 G; 823 T; 0 other; accggtgggc gcgaaaaaaa aaggtggtcc ccgccccacg tgaatatgtc gcgcgagtgc 60 taaacatgtc gcgcgatccc tcccaatcag aataaagcct gaaagctatg ttaaggacat 120 tttgtcctta aatacttcgg ccccaagtat tagatttaca acatgtggga tccattagtc 180 aacgagttcc ccgaatctgt gcatgggttt cgttgtatgc ttgcaataaa atatttgcag 240 gctttagagg atacttacga gcccaacact ttggggtctg atttaattag agatttaata 300 tctgtgatta gagcgaagaa ttatgtcgaa gcgaccagga gatataattt tttccacgcc 360 cgtctcgaag gttcgtcgaa ggctgaactt cgacagccct tacacgagcc gtgcaactgt 420 ccccactgtc ctaggcacaa gcaaacgtcg gtcatggact caccggccaa tgtacagaaa 480 gcccagaatg taccggatgt acagaagccc tgatgttcct cgaggatgtg aaggtccatg 540 taagatccaa tcatttgatc aacgtgactc agtaacccat acaggtaatt cgagatgtct 600 aagtgatgtc acaagaggta atggtcttac tcatcgtaca ggtaaacgtt ttgttatcaa 660 gtctgtttac atattaggta aggtttggat ggacgagaat gttaagaagt ccaatcacac 720 aaacacgtgt atgttcaggt tagttagaga tagacgtcca tatggtaata gcccacaaga 780 ttttggacag gtatttaata tgtttgataa tgagcccagc actgcgacgg ttatgaacga 840 caagcgtgac cgttatcagg ttttaaagag gtttcaagca actgttactg gaggaccgtc 900 tggttgcaaa gaggctgcta ttgttaggcg ttttttcaag ataaaccatc atgtcactta 960 caatcatcag gaagcagcca aatatgagaa tcatacggag aatgctttac tactgtatat 1020 ggcatgtacc catgcgtcaa atccagtata tgcgagtctt aaaatacgaa tgtatttcta 1080 tgattcagtc agcaattaat aaatatcgaa ttttatttca tgactttctg ttacatctat 1140 tgtatttagt agtactgaat acagaacatg ggcaactgcc ctaatcacta aattaattga 1200 aattacaccc aaattattta agtattttag aacctgtgtt ctaaataccc ttaagaaacg 1260 accagtctga ggccgtaagg tcgtccagac cctgaagttg agaaaacact tgtgaatccc 1320 caatgccttc cgaaggttgt ggttgaaccg gatttggaca tctattatgt gaaacggccg 1380 gttgaacggg tgtattaggt gtcttgtaat cttgaaatat aggggatttg gtgtctccca 1440 gataaaaacg ccattcgttg tctgacgagc agtgatgagt tcccctgtgc gagaatccat 1500 ggttggcgca gtttatgtgt aggtagtatg agcatccaca cttgaggtcg attcgtctac 1560 gcctcactac cttcttcttg gctatgcggt gctggacttt gatcggtagt tgagtagagt 1620 ggctcgctga gggtgatgaa tgttgcattt ttaattgccc aggctttcaa tgcagcattt 1680 ttattttctt cgagatattc tttataggaa gccgttggcc caggattgca gaggaagatt 1740 gttgggatac ctcctttaat ttgaattggt ttcccgtact tcgtgttgct ctgccagtcc 1800 ctttgggccc ccatgaattc tttaaagtgt ttgagataat gcgggtcaac atcatctatg 1860 acgttatacc atgcgtcatt tgaatagacc cttgggctaa gatctatatg accacataga 1920 taattatgtg ggcctaagga cctagcccac attgtcttcc ctgttctact atcaccctca 1980 acaactatac tttgaggtct ccagggccgc gcagcggcac caacgacgtt ctcagctgcc 2040 cattcttcta gttcttcggg aacattatta aaagaagaag acgaaaaagg agaaacataa 2100 acttcgggcg gagcctgaaa gattctatct aagtttgact ttaaattatg atattggaaa 2160 atataatctt tagggagttt ttccctaata attgccatag cagcatcagc ggaacctgca 2220 ttcaatgcct ctgctgcagc gtcgttagca gtctggcagc ctcccctagc acttcttccg 2280 tcgacctgga actctcccca ttccagggtg tcgccgtcct tgtcgatgta ggacttgacg 2340 tccgagctag acttagctcc ctgaatgttc ggatggaaat gtgttgacct acttggggag 2400 accaggtcga agaatcgctg atttgtgcag ttgtatttgc cctcgaactg gataagcaca 2460 tggagatgtg gttccccatt ctcatgtaac tcacggcaga ttttaatata ttttttattt 2520 gtaggggttt gtaaatcttt gagttgccct aatgcgtctt ctttagacag agagcatttt 2580 gggaaagtga gaaaataatt tttggcctta atgctaaaac gaccagctct tggcatcttg 2640 aatgtcgttt agcaatcggg gggcactcaa agtctggtga atcgggggaa ctggggggca 2700 atttatatgt gccccccaaa tggcattctc gtaattttgt aaagaaactt actttaattc 2760 aaattcccca tagcgcccac cgttataata tt 2792 //