ID   DQ875872; SV 1; linear; genomic DNA; STD; VRL; 2611 BP.
XX
AC   DQ875872;
XX
DT   26-SEP-2006 (Rel. 89, Created)
DT   01-AUG-2007 (Rel. 92, Last updated, Version 3)
XX
DE   Sida yellow mosaic Yucatan virus segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Sida yellow mosaic Yucatan virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2611
RX   DOI; 10.1007/s11262-007-0080-5.
RX   PUBMED; 17638064.
RA   Hernandez-Zepeda C., Idris A.M., Carnevali G., Brown J.K.,
RA   Moreno-Valenzuela O.A.;
RT   "Molecular characterization and phylogenetic relationships of two new
RT   bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico";
RL   Virus Genes 35(2):369-377(2007).
XX
RN   [2]
RP   1-2611
RA   Hernandez-Zepeda C., Moreno-Valenzuela O.A., Brown J.K.;
RT   ;
RL   Submitted (01-AUG-2006) to the INSDC.
RL   Unidad de Bioquimica y Biologia Molecular de Plantas, Centro de
RL   Investigacion Cientifica de Yucatan (CICY), Calle 43 No. 130, Merida,
RL   Yucatan 97200, Mexico
XX
DR   MD5; 23074579c8b6ca94bb79fe3fc7d8eaeb.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2611
FT                   /organism="Sida yellow mosaic Yucatan virus"
FT                   /segment="DNA-A"
FT                   /host="Sida acuta"
FT                   /mol_type="genomic DNA"
FT                   /country="Mexico:Yucatan"
FT                   /db_xref="taxon:408719"
FT   gene            197..949
FT                   /gene="AV1"
FT   CDS             197..949
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q06HP4"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP4"
FT                   /protein_id="ABI85407.1"
FT                   /translation="MPKRDLPWRAIAGTSKVSRNANYSPRAGSGPRNKASEWVNRPMYR
FT                   KPRIYRMMRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFC
FT                   VKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVK
FT                   NDLRDRYQVMHKFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALL
FT                   LYMACTHASNPVYATLKIRIYFYDSITN"
FT   gene            complement(946..1344)
FT                   /gene="AC3"
FT   CDS             complement(946..1344)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="REn"
FT                   /db_xref="GOA:Q06HP3"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP3"
FT                   /protein_id="ABI85410.1"
FT                   /translation="MDSRTGEPITARQAENGVYIWEIENPLYFKIFRVEDPLYTRSRVY
FT                   SVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGSTYLARFKQLVNMYLDQLGVISINN
FT                   VIRAVRFATDRSYVNYVLENHSIKFKFY"
FT   gene            complement(1091..1480)
FT                   /gene="AC2"
FT   CDS             complement(1091..1480)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein"
FT                   /note="TrAP"
FT                   /db_xref="GOA:Q06HP2"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP2"
FT                   /protein_id="ABI85409.1"
FT                   /translation="MRSSSPSHPPSIKTAHRQAKRRAIRRRRIDLECGCSIYFHIGCTG
FT                   HGFTHRGTHHCTSGREWRLYLGDRKSPLFQDIPSRGPAVHEEQGVQRTNTVQPQPEESV
FT                   ASPQSLPELPSLDDIDDSFWVDLFS"
FT   gene            complement(1392..2477)
FT                   /gene="AC1"
FT   CDS             complement(1392..2477)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="REP protein"
FT                   /db_xref="GOA:Q06HP1"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HP1"
FT                   /protein_id="ABI85408.1"
FT                   /translation="MPPVKRSKVSAKNYFLTYPKCSLTKEEALSQLQNLNTPVNKKFIK
FT                   ICRELHENGEPHLHILLQFEGKYQCTNNRFFDLVSPTRSIHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIEWGEFQIDGRSARGGQQTANDSYAKALNAGSAEAALQIIKEEQPQHFFLQHH
FT                   NLVANATKIFQKNPEPWVPPFPLSSFTSVPEEMQEWADDYFGRGAAARPERPVSLIVEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNHRVYSNDVEYNVIDDVAPHYLKLKHWKELLGAQ
FT                   KDWQSNCKYGKPVQIKGGIPAIVLCNPGEGASYKDFLDKEENAALRNWTIKNAIFITLT
FT                   SALYQDSTQTGQEEGHQETAD"
XX
SQ   Sequence 2611 BP; 627 A; 598 C; 642 G; 744 T; 0 other;
     accggatggc cgcgctttgg ggtatgctcc cccccccccg cgcgcgattt ttaatttgaa        60
     ttaaagatgg tccagacgct ctcgtccaat catgtcgcgt ctgacaagct tatatatttt       120
     tgaacaactt gggccctaag ttgttgggtg tccgttataa atttaaaatt atttggccca       180
     ctgcctttaa ctcaaaatgc ctaagcgcga tctcccatgg cgcgcgatag cgggaacctc       240
     aaaggttagc cgcaatgcta actattctcc tcgtgcagga agtgggccaa gaaacaaggc       300
     ctctgaatgg gtgaacaggc ccatgtacag gaagcccagg atctaccgga tgatgaggac       360
     ccccgatgtg cccagaggat gtgaggggcc ttgtaaggtc cagtcgtatg aacagcgcca       420
     cgacatttca catgtcggca aggtcatgtg catatctgac gtgacacgtg gtaatggtat       480
     cacccaccgt gtgggtaagc gtttctgtgt gaaatctgtg tatatccttg gtaagatctg       540
     gatggacgag aacatcaagc tcaagaacca cacgaacagt gtcatgttct ggttggtcag       600
     ggatcgtaga ccgtatggca cgcctatgga ttttggacaa gtgttcaaca tgttcgacaa       660
     cgagcccagc actgctacgg tgaagaacga cctacgcgat cgttaccaag tcatgcacaa       720
     gttttatggt aaggtgacag gtggacagta tgccagcaac gagcaggcta tagtcaagag       780
     attctggaag gtcaacaatc atgtggtcta caaccaccag gaggctggca agtatgagaa       840
     tcacacggag aacgcgctgt tattgtatat ggcatgtact catgcatcta accctgtgta       900
     tgcaacgctt aagattcgaa tctatttcta cgattcgatc acgaattaat aaaatttgaa       960
     ttttattgaa tgattttcca gtacataatt tacatacgat ctgtctgttg cgaatcgaac      1020
     agctctgatt acattgttaa tggaaataac gcctaactga tctaagtaca tgttaactaa      1080
     ttgtttaaac ctagctaaat aagtcgaccc agaagctgtc atcgatgtcg tccaaacttg      1140
     gaagttcagg taagctttgt ggagatgcaa cgctctcctc aggttgtggt tgaaccgtat      1200
     ttgtacgctg tacaccctgc tcctcgtgta cagcgggtcc tctactcgga atatcttgaa      1260
     ataaagggga ttttctatct cccagatata gacgccattc tctgcctgac gtgcagtgat      1320
     gggttcccct gtgcgtgaat ccatgcccgg tacagcctat gtggaagtat atggagcaac      1380
     cgcactccag atcaatccgc cgtctcctga tggccctcct cttggcctgt ctgtgtgctg      1440
     tcttgataga gggcggatgt gagggtgatg aagatcgcat tcttgatcgt ccagtttctg      1500
     agtgcagcgt tttcctcttt gtcgaggaaa tctttatagc ttgcaccctc acctggattg      1560
     caaagcacga ttgctgggat acctcctttt atttgaactg gcttgccgta cttgcaattt      1620
     gactgccagt ctttctgggc ccccagcaat tctttccagt gctttagctt tagatagtgc      1680
     ggtgcgacgt catcaatgac gttatactcc acgtcatttg agtatacccg gtgattgaag      1740
     tccagatgtc cactgaggta attatgtggg cctaacgcac gagcccacat cgtcttccct      1800
     gtccttgaat caccttcaac tatgagactt actggtctct caggccgcgc agcggcacct      1860
     ctcccaaaat aatcatctgc ccactcttgc atctcttctg gaacggatgt gaatgaggag      1920
     aggggaaacg gcgggaccca cggttccgga ttcttctgaa atattttggt tgcattagca      1980
     accaggttgt gatgttgaag gaagaaatgt tgcggttgtt cttcctttat gatttgcaga      2040
     gctgcctctg cggaaccggc gttcaacgcc ttggcatatg aatcgttagc tgtctgctga      2100
     cctcctcgag cagatctgcc gtcgatctgg aattctcccc attcgatggt gtctccgtct      2160
     ttctcgacgt aggacttgac gtcggagctg gatttagctc cctgtatgtt cggatggaaa      2220
     tgtattgacc tggttgggga caccagatcg aagaatctgt tattcgtgca ctggtacttc      2280
     ccttcgaact ggaggagaat gtggaggtga ggctccccat tttcgtgtaa ttctctgcag      2340
     atcttgatga acttcttgtt caccggagtg tttaggtttt gtaattggga aagtgcttct      2400
     tctttagtaa gagagcactt aggatatgtg aggaaatagt ttttcgctga gactttggag      2460
     cgcttaaccg gtggcatttt tgtaataaga agagtgtacc ccggatgagc tctcaaactt      2520
     ctgtgttatg aattggggta atgggttaca atatatacta taaccctcat ttacggattt      2580
     gcaacacgtg gcggccatcc gctataatat t                                     2611
//