ID   DQ875868; SV 1; linear; genomic DNA; STD; VRL; 2606 BP.
XX
AC   DQ875868;
XX
DT   26-SEP-2006 (Rel. 89, Created)
DT   01-AUG-2007 (Rel. 92, Last updated, Version 2)
XX
DE   Corchorus yellow spot virus segment DNA-A, complete sequence.
XX
KW   .
XX
OS   Corchorus yellow spot virus
OC   Viruses; Geminiviridae; Begomovirus.
XX
RN   [1]
RP   1-2606
RX   DOI; 10.1007/s11262-007-0080-5.
RX   PUBMED; 17638064.
RA   Hernandez-Zepeda C., Idris A.M., Carnevali G., Brown J.K.,
RA   Moreno-Valenzuela O.A.;
RT   "Molecular characterization and phylogenetic relationships of two new
RT   bipartite begomovirus infecting malvaceous plants in Yucatan, Mexico";
RL   Virus Genes 35(2):369-377(2007).
XX
RN   [2]
RP   1-2606
RA   Hernandez-Zepeda C., Moreno-Valenzuela O.A., Brown J.K.;
RT   ;
RL   Submitted (01-AUG-2006) to the INSDC.
RL   Unidad de Bioquimica y Biologia Molecular de Plantas, Centro de
RL   Investigacion Cientifica de Yucatan (CICY), Calle 43 No. 130, Merida,
RL   Yucatan 97200, Mexico
XX
DR   MD5; feb7e40a8c3d02d00543670470a33b46.
DR   EuropePMC; PMC6344024; 30673741.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2606
FT                   /organism="Corchorus yellow spot virus"
FT                   /segment="DNA-A"
FT                   /host="Corchorus siliquosus"
FT                   /mol_type="genomic DNA"
FT                   /country="Mexico:Yucatan"
FT                   /clone="p347CoYSV"
FT                   /db_xref="taxon:403897"
FT   gene            191..946
FT                   /gene="AV1"
FT   CDS             191..946
FT                   /codon_start=1
FT                   /gene="AV1"
FT                   /product="coat protein"
FT                   /db_xref="GOA:Q06HQ6"
FT                   /db_xref="InterPro:IPR000263"
FT                   /db_xref="InterPro:IPR000650"
FT                   /db_xref="InterPro:IPR029053"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HQ6"
FT                   /protein_id="ABI85395.1"
FT                   /translation="MPKRDLPWRSIAGTSKVSRNANYSPRAGSGPRVNKAAEWVNRPMY
FT                   RKPRIYRMRRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRF
FT                   CVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATV
FT                   KNDLRDRYQVMHKFYGKVTGGQYASNEQSIVQRFWKVNNHVVYNHQEAGKYENHTENAL
FT                   LLYMACTHASNPVYATLKIRIYFYDSITN"
FT   gene            complement(943..1341)
FT                   /gene="AC3"
FT   CDS             complement(943..1341)
FT                   /codon_start=1
FT                   /gene="AC3"
FT                   /product="replication enhancer protein"
FT                   /note="REn"
FT                   /db_xref="GOA:Q06HQ5"
FT                   /db_xref="InterPro:IPR000657"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HQ5"
FT                   /protein_id="ABI85398.1"
FT                   /translation="MDSRTGELITARQAENGVYIWEIENPLYFKMYRVEEPLYTRTRVY
FT                   HVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGPIYLARLKHLVHMYLDQLGVISLNN
FT                   VIRAVRFATDRSYVNYVLENHSIKFKFY"
FT   gene            complement(1088..1477)
FT                   /gene="AC2"
FT   CDS             complement(1088..1477)
FT                   /codon_start=1
FT                   /gene="AC2"
FT                   /product="transactivator protein"
FT                   /note="TrAP"
FT                   /db_xref="GOA:Q06HQ4"
FT                   /db_xref="InterPro:IPR000942"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HQ4"
FT                   /protein_id="ABI85397.1"
FT                   /translation="MRSSSPSHPPSIKXAHRQAKKRAIRRRRIDLECGCSIYFHIGCTG
FT                   HGFTHRGTHHCTSGREWRLYLGDRKSPLFQDVPSRGTVIHEDQGLPRTDKVQPQPEESV
FT                   ASPQSLPEFPSLDDIDDSFWADLFS"
FT   gene            complement(1389..2474)
FT                   /gene="AC1"
FT   CDS             complement(1389..2474)
FT                   /codon_start=1
FT                   /gene="AC1"
FT                   /product="REP protein"
FT                   /db_xref="GOA:Q06HQ3"
FT                   /db_xref="InterPro:IPR001191"
FT                   /db_xref="InterPro:IPR001301"
FT                   /db_xref="InterPro:IPR022690"
FT                   /db_xref="InterPro:IPR022692"
FT                   /db_xref="UniProtKB/TrEMBL:Q06HQ3"
FT                   /protein_id="ABI85396.1"
FT                   /translation="MPRKGSFSIKAKNYFLTYPQCSLTKEEALSQLQNLNTPVNKKFIK
FT                   ICRELHENGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSIHFHPNIQGAKSSSDVKSYV
FT                   EKDGDTIEWGVFQIDGRSARGGQQTSNDAAAEALNSGTKEEAMKIIKEKLPEKYLFQFH
FT                   NLSSNLDRIFSKPPKLWEPPFPLSSFTNVPDEMQEWADDYFGRGSAARPERPVSLIVEG
FT                   DSRTGKTMWARALGPHNYLSGHLDFNARCYSNEVEYNVIDDVAPHYLKLKHWKELLGAQ
FT                   KDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENSALRNWTLKNAVFITLT
FT                   SALYQXSTQASQEEGHQEEAD"
XX
SQ   Sequence 2606 BP; 633 A; 612 C; 633 G; 727 T; 1 other;
     accggatggc cgcgcgattt ttcccccccc tcgcgcgcac gctcctcttt aatttgaatt        60
     aaagcgccca cttgcgctat cgtccaatca ttttgcgcct gacgagtcta gatatttgca       120
     acaacttggg ccctaagttg ttgattggtt ataaattaaa gaggctttgg cccactgtct       180
     ttaactcaaa atgcctaagc gcgatctccc atggcgctcg atcgcgggaa cttcaaaggt       240
     tagccgcaat gctaattatt ctcctcgtgc aggaagtggg ccaagagtaa acaaggccgc       300
     tgaatgggtt aacaggccca tgtacagaaa gcccaggatc taccggatga ggaggactcc       360
     tgatgtgccc agaggctgtg aagggccttg taaggtccag tcctatgaac agcgtcacga       420
     tatctcacat gtcggtaagg ttatgtgcat ctccgatgtg acacgtggta atgggatcac       480
     ccatcgtgtt ggtaagcgtt tctgtgttaa gtctgtgtat atcctcggta agatctggat       540
     ggatgagaac atcaagctca agaaccacac gaacagtgtt atgttctggt tggtcaggga       600
     ccgtagaccg tatggcacgc caatggattt cggtcaggtg ttcaacatgt tcgacaacga       660
     gcccagcact gctacggtga agaacgatct acgagatcgt taccaggtca tgcacaagtt       720
     ctatggcaaa gtgacaggtg gacagtatgc cagcaatgaa cagtctatag tgcagagatt       780
     ctggaaggtc aacaatcatg tggtgtacaa ccaccaagag gctggcaagt acgagaatca       840
     cacggagaac gctctgttat tgtatatggc atgtactcat gcctctaacc ctgtgtatgc       900
     aacgcttaag attcgaatct acttctacga ttcgataacg aattaataaa atttaaattt       960
     tattgaatga ttttccagta catagttgac atacgatctg tccgttgcga atcgaacagc      1020
     tctaattaca ttgttaagac taatgacgcc taattgatct aagtacatat gcactaagtg      1080
     cttaagtcta gctaaataga tcggcccaga agctgtcatc gatgtcgtcc agacttggaa      1140
     attcaggtaa gctttgtgga gatgcaacgc tctcctcagg ttgtggttga accttatctg      1200
     tacgtggtag accctggtcc tcgtgtataa cggttcctct actcggtaca tcttgaaata      1260
     gaggggattt tcgatctccc agatatagac gccattctct gcctgacgtg cagtgatgag      1320
     ttcccctgtg cgtgaatcca tgcccggtac agcctatgtg aaagtatatg gagcacccgc      1380
     actccagatc aatccgcctc ctcctgatgg ccctcttctt ggcttgcctg tgtgctgyct      1440
     tgatagaggg cggatgtgag ggtgatgaag accgcattct tgagagtcca gttcctgaga      1500
     gctgagtttt cctctttgtc caggaaatct ttatagctgg caccctcacc tggattgcaa      1560
     agcacgattg atgggatccc tcctttaatt tgaactggct tgccgtattt gcaatttgac      1620
     tgccagtcct tctgggcccc cagaagttct ttccagtgct ttagctttag atagtgcggt      1680
     gcgacgtcat caatgacgtt atactccact tcgttcgaat agcaccgggc attgaaatcc      1740
     aggtgtccac taagataatt atgtgggcct aacgcacgag cccacatcgt cttccctgtc      1800
     ctcgagtcac cctctactat gagactaaca ggtctttccg gccgcgcagc ggaacctctc      1860
     ccaaaataat cgtccgccca ctcttgcatc tcgtccggca cgttagtgaa agaggagagg      1920
     ggaaacggag gttcccaaag ctttggaggc ttactgaaaa tcctatcgag gttactggat      1980
     aggttgtgaa actgaaagag atacttctcc ggcagcttct ctttgatgat tttcatagcc      2040
     tcctcctttg ttccagagtt caacgcctcg gcggctgcat cgttagatgt ctgctgacct      2100
     cctcgagcac ttctaccgtc gatctggaac accccccatt cgatggtgtc gccgtctttc      2160
     tcgacgtagg acttgacgtc ggagctggat ttagctccct gaatgttcgg atggaaatgt      2220
     attgacctgg ttggggacac cagatcgaag aatctgttat tcgtgcagtt gtatttccct      2280
     tcgaactgta tgagcacgtg gagatgaggc tccccattct catgaagttc tctgcagatc      2340
     ttgatgaact tcttgttcac tggagtattt aggttttgta attgggaaag tgcttcttct      2400
     ttagtaagag agcactgggg gtatgtgagg aaatagtttt tggctttgat tgagaaagaa      2460
     ccctttcgtg gcatatttgt aaataagggt gttcccccga tagctctctc gctcaaactt      2520
     cctatgaatt gggggaactg ggggaactta tatagtagaa gttcctaaag gcaatgcaac      2580
     acgtggcggc catccgttat aatatt                                           2606
//