ID   DQ871339; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ871339;
XX
DT   28-AUG-2006 (Rel. 88, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate CARDI HC10 helper component protein gene,
DE   partial cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RA   Spence A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-1371
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the INSDC.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
DR   MD5; 7513363951368dbec4328432f3828b8a.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Tobacco etch virus"
FT                   /isolate="CARDI HC10"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /product="helper component protein"
FT                   /note="HC"
FT                   /db_xref="GOA:Q0GDV3"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDV3"
FT                   /protein_id="ABI30955.1"
FT                   /translation="RNISEAFFIPYSKKFLELRPDGISHECTRGVSVERCGEVAAILTQ
FT                   ALSPCGKITCKRCMVETPDIVEGASGESVTNQGKLLAMLKEQYPDFPMAEKLLTRFLQQ
FT                   KSLVNTNLTACASVKQLIGDRKQAPFTHVLAVSEILFKGSRLTGADLEEASTHMLEIAR
FT                   FLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFIWGLRGAHAKRFLKGF
FT                   FTEIDPNEGYEKFVIRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNYCIS
FT                   MRNGNYVYPCCCVTLEDGKAQYSDLKHPTKRHLVIGNSGDSKFLDFPVLNEEKMYIANE
FT                   GYWYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVAAACYLLSILYPDVL
FT                   SAELPRILVDHDNKTMHVLDSYGSKTTGYHMLKMNTTSQLIEFVHSGLESEMKTYNVG"
XX
SQ   Sequence 1371 BP; 435 A; 267 C; 307 G; 362 T; 0 other;
     cgcaacatct ctgaggcatt ttttatacca tactctaaga aatttttgga gttgagacca        60
     gatggaattt cccatgagtg tacaagagga gtgtcagttg agcggtgcgg cgaagtggct       120
     gcaatcctga cacaagcact ttcaccatgt ggtaagatca catgtaaacg ttgcatggtt       180
     gaaacgcctg atattgttga gggtgcttcg ggagaaagtg tcactaacca aggtaagctc       240
     cttgcaatgc tgaaagaaca atatccagat ttcccaatgg ccgaaaaatt actcacaagg       300
     tttcttcaac agaaatcact agtaaataca aatttgacag cctgcgcgag cgtcaaacaa       360
     ctcattggtg atcgcaaaca agctccattc acacatgttc tggctgttag cgaaatcctg       420
     ttcaaaggca gtagactaac aggggctgat ctcgaggagg caagcacaca tatgcttgaa       480
     atagcaaggt tcttgaacaa tcgcactgaa aatatgcgca ttggccacct tggttccttc       540
     agaaataaaa tctcatcgaa ggcccatgtg aataacgcac tcatgtgtga taatcaactt       600
     gatcagaatg ggaactttat ttggggacta aggggtgcac acgcgaagag gtttcttaaa       660
     ggattcttca ctgagattga tccaaatgaa ggatacgaga agtttgtgat caggaaacat       720
     atcaggggta gcagaaagct agcaattggc aatctgataa tgtcaactga cttccaaacg       780
     ctcaggcaac agattcaagg cgaaactatt gagcgtaaag aaattgggaa ttactgcatt       840
     tcaatgcgaa acggtaatta cgtataccca tgttgttgtg ttacccttga agatggtaag       900
     gctcaatatt cagatttaaa gcacccaaca aagagacatc tggtcattgg caactctggc       960
     gattcaaagt tcctggactt tccagttctt aatgaagaga aaatgtatat agctaacgaa      1020
     ggttattggt acatgaacat tttctttgct ctactagtga atgtcaaaga agaggatgca      1080
     aaggacttca ccaagtttat aagggacaca attgttccaa agcttggagc gtggccaacg      1140
     atgcaggatg ttgcagctgc atgctactta ctttctattc tttacccaga tgtcctgagt      1200
     gctgagttac ccagaatttt ggttgatcat gacaacaaaa caatgcatgt tctggattcg      1260
     tatgggtcta aaacgacagg gtaccacatg ttgaagatga acacaacatc ccaactaatt      1320
     gaattcgttc attccggatt ggaatccgaa atgaaaactt ataatgttgg a               1371
//