ID   DQ871337; SV 1; linear; genomic RNA; STD; VRL; 1374 BP.
XX
AC   DQ871337;
XX
DT   28-AUG-2006 (Rel. 88, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Tobacco etch virus isolate CARDI HC8 helper component protein gene, partial
DE   cds.
XX
KW   .
XX
OS   Tobacco etch virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1374
RA   Spence A.;
RT   "Genetic Characterization of TEV Infecting Scotch Bonnet Pepper in
RT   Jamaica";
RL   Unpublished.
XX
RN   [2]
RP   1-1374
RA   Spence A.;
RT   ;
RL   Submitted (31-JUL-2006) to the INSDC.
RL   Department of Basic Medical Sciences, Biochemistry Section, The University
RL   of the West Indies, Mona, Kingston 7, Jamaica
XX
DR   MD5; 3a9a5741c4d87bb61e884e2e2f357fb3.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1374
FT                   /organism="Tobacco etch virus"
FT                   /isolate="CARDI HC8"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:12227"
FT   CDS             <1..>1374
FT                   /codon_start=1
FT                   /product="helper component protein"
FT                   /note="HC"
FT                   /db_xref="GOA:Q0GDV5"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q0GDV5"
FT                   /protein_id="ABI30953.1"
FT                   /translation="RIISEAFFIPYSKKFLELRPDGISHECTRGVSVERCGEVAAILTQ
FT                   ALSPCGKITCKRCMVETPDIVEGASGESVTNQGKLLAMLKEQYPDFPMAEKLLTRFLQQ
FT                   KSLVNTNLTACASVKQLIGDRKQAPFTHVLAVSEILFKGSRLTGADLEEASTHMLEIAR
FT                   FLNNRTENMRIGHLGSFRNKISSKAHVNNALMCDNQLDQNGNFIWGLRGAHAKRFLKGF
FT                   FTEIDPNEGYEKFVIRKHIRGSRKLAIGNLIMSTDFQTLRQQIQGETIERKEIGNYCIS
FT                   MRNGNLRIPMLLCLPLEDGKAQYSDLKHPTKRHLVIGNSGDSKYLDFPVLNEEKMYIAN
FT                   EGYCYMNIFFALLVNVKEEDAKDFTKFIRDTIVPKLGAWPTMQDVATACYLLSILYPDV
FT                   LSAELPRILVDHDNKTMHVLDSYGSKTTGYHMLKMNTTSQLIEFVHSGLESEMKTYNVG
FT                   "
XX
SQ   Sequence 1374 BP; 437 A; 268 C; 305 G; 364 T; 0 other;
     cgcatcatct ctgaggcatt ttttatacca tactctaaga aatttttgga gttgagacca        60
     gatggaattt cccatgagtg tacaagagga gtgtcagttg agcggtgcgg cgaagtggct       120
     gcaatcctga cacaagcact ttcaccatgt ggtaagatca catgtaaacg ttgcatggtt       180
     gaaacgcctg atattgttga gggtgcttcg ggagaaagtg tcactaacca aggtaagctc       240
     cttgcaatgc tgaaagaaca atatccagat ttcccaatgg ccgaaaaatt actcacaagg       300
     tttcttcaac agaaatcact agtaaataca aatttgacag cctgcgcgag cgtcaaacaa       360
     ctcattggtg atcgcaaaca agctccattc acacatgttc tggctgttag cgaaatcctg       420
     ttcaaaggca gtagactaac aggggctgat ctcgaggagg caagcacaca tatgcttgaa       480
     atagcaaggt tcttgaacaa tcgcactgaa aatatgcgca ttggccacct tggttccttc       540
     agaaataaaa tctcatcgaa ggcccatgtg aataacgcac tcatgtgtga taatcaactt       600
     gatcagaatg ggaactttat ttggggacta aggggtgcac acgcgaagag gtttcttaaa       660
     ggattcttca ctgagattga tccaaatgaa ggatacgaga agtttgtgat caggaaacat       720
     atcaggggta gcagaaagct agcaattggc aatctgataa tgtcaactga cttccaaacg       780
     ctcaggcaac agattcaagg cgaaactatt gagcgtaaag aaattgggaa ttactgcatt       840
     tcaatgcgaa acggtaattt acgtataccc atgttgttgt gtttacccct tgaagatggt       900
     aaggctcaat actcagattt aaagcaccca acaaagagac atctggtcat tggcaactct       960
     ggcgattcaa agtacctgga ctttccagtt cttaatgaag agaaaatgta tatagctaac      1020
     gaaggttatt gctacatgaa cattttcttt gctctactag tgaatgtcaa agaagaggat      1080
     gcaaaggact tcaccaagtt tataagggac acaattgttc caaagcttgg agcgtggcca      1140
     acgatgcagg atgttgcaac tgcatgctac ttactttcta ttctttaccc agatgtcctg      1200
     agtgctgagt tacccagaat tttggttgat catgacaaca aaacaatgca tgttttggat      1260
     tcgtatgggt ctaaaacgac agggtaccac atgttgaaga tgaacacaac atcccaacta      1320
     attgaattcg ttcattcagg attggaatcc gaaatgaaaa cttataatgt tgga            1374
//