ID   DQ855428; SV 1; linear; genomic RNA; STD; VRL; 1371 BP.
XX
AC   DQ855428;
XX
DT   02-OCT-2006 (Rel. 89, Created)
DT   24-DEC-2009 (Rel. 103, Last updated, Version 3)
XX
DE   Papaya ringspot virus isolate New Delhi helper component proteinase
DE   (Hc-Pro) gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; Riboviria; Potyviridae; Potyvirus.
XX
RN   [1]
RP   1-1371
RX   DOI; 10.1007/s12033-009-9205-5.
RX   PUBMED; 19672730.
RA   Mangrauthia S.K., Singh P., Praveen S.;
RT   "Genomics of helper component proteinase reveals effective strategy for
RT   papaya ringspot virus resistance";
RL   Mol. Biotechnol. 44(1):22-29(2010).
XX
RN   [2]
RP   1-1371
RA   Mangrauthia S.K., Jain R.K., Praveen S.;
RT   ;
RL   Submitted (17-JUL-2006) to the INSDC.
RL   Advanced Center for Plant Virology, Division of Plant Pathology, Indian
RL   Agricultural Research Institute, Pusa, New Delhi 110012, India
XX
DR   MD5; af9229c384319567c21a985124510ba8.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1371
FT                   /organism="Papaya ringspot virus"
FT                   /isolate="New Delhi"
FT                   /mol_type="genomic RNA"
FT                   /note="biotype: PRSV-P"
FT                   /db_xref="taxon:12205"
FT   gene            <1..>1371
FT                   /gene="Hc-Pro"
FT   CDS             <1..>1371
FT                   /codon_start=1
FT                   /gene="Hc-Pro"
FT                   /product="helper component proteinase"
FT                   /note="multifunctional protein; roles in transmission,
FT                   genome amplification, PTGS suppression and movement"
FT                   /db_xref="GOA:Q06IX7"
FT                   /db_xref="InterPro:IPR001456"
FT                   /db_xref="InterPro:IPR031159"
FT                   /db_xref="InterPro:IPR042308"
FT                   /db_xref="UniProtKB/TrEMBL:Q06IX7"
FT                   /protein_id="ABI37010.1"
FT                   /translation="NDVAEKFWLGFNRAFLRHRKPTDHTCTSDMDVTMCGEVAALATII
FT                   LFPCHKITCNTCMSKVKGRVIDEVGEDLNCELGRLRETLLSYGGSFGHVSALLDQLNRV
FT                   LNARNMNDGAFKEIAKKIDEKKESPWTHMTAINNTLIKGSLATGNEFERASDSLREIVR
FT                   WHLKRTESIKAGSVESFRNKRSGKAHFNSALTCDNQLDRNGNFLWGERQYHAKRFFANY
FT                   FEKIDHSKGYEHYSQRQTPNGIRRIAIGNLIFSTNLERFRQQMVEHHIDQGPITRECIA
FT                   LRNNNYVHVWSCVTLDDGTPATSEMKTPTKNQIVLGNSGDPKYVDLPTLESDSMYIAKK
FT                   GYCYMNIFLAMLINIPENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLTIFHPDAA
FT                   NAELPRILVDHRQKTMHVIDSFGSVDSGYHILKANTVNQLIQFAREPLDSEMKHYIVG"
XX
SQ   Sequence 1371 BP; 429 A; 264 C; 321 G; 357 T; 0 other;
     aatgacgtgg ctgaaaaatt ctggcttggt tttaataggg cttttctgcg gcacagaaaa        60
     ccaacggacc acacttgcac gtctgatatg gatgttacaa tgtgcgggga agtggcagct       120
     cttgcaacta taattttgtt cccatgtcac aagataactt gcaacacttg catgagcaaa       180
     gtaaagggga gagttattga cgaagttggt gaggatctga attgtgagct tggacgtttg       240
     cgtgaaactc ttttgtcata tggaggatca ttcgggcatg tttcagcact acttgaccaa       300
     ctaaacagag ttttgaatgc ccggaatatg aacgatggag cttttaaaga aattgcaaag       360
     aagattgatg aaaagaaaga gagtccttgg actcacatga cagctatcaa caacacgctc       420
     attaaaggtt cgctagcaac tggcaacgaa tttgaaagag catccgatag ccttcgagag       480
     atcgtgagat ggcatctcaa aaggacagaa tcaataaaag ctggcagcgt ggaaagtttc       540
     agaaataagc gttctggaaa agctcacttc aactcagctc ttacgtgtga taatcaattg       600
     gacaggaatg gtaatttctt atggggtgag aggcaatacc acgccaaaag gttctttgca       660
     aactattttg aaaagattga tcacagtaag ggttatgagc actatagtca acgccagacc       720
     ccaaatggca ttaggagaat tgccattggc aatttgatat tctcaacaaa tttggagagg       780
     tttcggcagc aaatggttga acaccacatt gatcaaggac caatcactcg tgagtgcatt       840
     gcattacgta ataacaatta cgttcatgtt tggagctgtg ttactttaga tgatggaacc       900
     cccgcaacaa gtgaaatgaa aactcctacc aagaaccaaa tcgttctggg taattctggt       960
     gatcctaagt acgttgacct gccgactctt gagtccgatt cgatgtacat agccaagaaa      1020
     ggttactgtt acatgaacat ttttttggcg atgctcataa acatacctga aaacgaggcg      1080
     aaggacttta cgaagagggt tcgtgatctt gtgggttcaa aactcggaga gtggccaacg      1140
     atgttagatg tcgcaacatg cgcaaatcag ctgacaatct ttcatcctga cgcagctaat      1200
     gcagaattgc cgcgaatctt agtggaccac cgacagaaaa caatgcatgt tattgactct      1260
     tttgggtccg tggattctgg atatcacata ttaaaggcaa acacagttaa tcagctgatc      1320
     caatttgcta gggaaccact cgatagtgaa atgaagcact acattgtcgg c               1371
//