ID DQ855088; SV 1; linear; genomic RNA; STD; VRL; 7342 BP. XX AC DQ855088; XX DT 02-OCT-2006 (Rel. 89, Created) DT 11-SEP-2007 (Rel. 93, Last updated, Version 2) XX DE Grapevine virus A isolate P163-1 putative replicase, movement protein, DE capsid protein, and RNA-binding protein genes, complete cds; and unknown DE gene. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7342 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7342 RA Goszczynski D.E.; RT ; RL Submitted (10-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX DR MD5; 05cca5b36a59f58e9080b9a1643632aa. DR EuropePMC; PMC4661162; 26640751. XX FH Key Location/Qualifiers FH FT source 1..7342 FT /organism="Grapevine virus A" FT /host="grapevine cv. Cinsaut Blanc clone P163/12" FT /lab_host="Nicotiana benthamiana" FT /isolate="P163-1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /note="mechanically transmitted from grapevine cv. Cinsaut FT Blanc to Nicotiana benthamiana acronym: GVA" FT /db_xref="taxon:35288" FT CDS 88..5220 FT /codon_start=1 FT /product="putative replicase" FT /note="ORF1" FT /db_xref="GOA:Q06IY2" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q06IY2" FT /protein_id="ABH07008.1" FT /translation="MSISVSSQRVAASNLFTNGAEEQIKAIKELKSKRLLETELGLDGL FT FDYFIPDTVREILTGYGMEFSVHSFQGHAHPISKMIENHMLYRIAPHYFSDRTLIISCK FT ESKVKRLKISNKNRNFNFAQYNRLVHAKDHHRYENATRDLDVGSLCGVINLEKTCECVF FT IHDEVQYWSLDEMQRFLGSLEHANRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLT FT WYPDGKAEGAYTQPVNPWLLGCSKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDS FT YKYDNFTVINPNDILRGRRGCKPLYLRARMIRPTLLYLCALKKADSNSAVAKLRMLSNR FT EENMDEALFVAQLAKQIKDTGLYDRMGNPSIKSLLSEAFHDIAGNLFTRLFNKPEYDAR FT CLEKFIRACETTEFYIPRKFMERVYRGSSLMVQRVVDWVEDEEANALDEVNLQELCKND FT RNPEPYGALVLNGDNRRAYVPITRIMRSHALILESARSVEINRVVVVCSARSLLNLRMF FT LIRLGRFRYMESRGLTDVQDMQEALEDGLLSEEEVEARLFTSQDTESEGSTSEETGHIV FT DEPRNDEAGTPRFSKVRNLIKEGIFTEQLKGREVAFYSRYSKDYKYAGGHHRSLGWDDA FT LDALIAELGLDESYDHCLIQRYMKDGAIGFHADDEPCYLPGGSVVTVNLNGEALFEVKE FT NSSGVIKKIHMKDGDVYTMGPGMQQTHKHRVQSLSDGRCSITLRDKTVDYEAQRKEGSS FT EYEEDIADADEGIEYLKRNSANMCSLKAIAEHMQLSIPTVVSIVNGESPQTLKEIESGG FT VSVATLVSLSRTLGFPIALHGNRGFAQTQGDYRKLHLRVGDGHVEPFEGVASSGGLREA FT LLLSDGIGQGIFRVDKVKADRLAQSFYSGCTGVLLGKYNKGKMHAAELEEPTEVLTSFG FT FAGSGKSHWCQTILRSCDVEKTLVISPRKVLKDDWAGKISKKHKVVTFEVAFMDDFGCK FT AIVIDEIGLLPPGYIDLVISVFHPNTLVLLGDPLQSSYHSKRDNVILEASQEDIFNRIK FT GALPYLCYSHRPPKNCKIFEIECMGGEAEKRITFRSKRGKDEPVICATRAMREMNGSGW FT YTVSETQGLSFKTCMIQLCEHWAKKNDEDVMVAFTRSRGEIAISVDRKLKEVLLRTSKS FT ELLRKILSGETYRRSSIIALVKKHIPEALIVFEENRLASNVDYEERLAGDPYLKSLLSL FT YEDIEEEEVEIEEPVALEPIRTHLPLSEKLNELIPFDLKAKEDREQYTEAGRTEQIDEE FT GYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYLSCHGIGRQMFS FT VLKETYQWKDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQ FT TCTKMEKRGVDAKAGQTIACFAHSVLCRFGPLLRQTEKAFRELLPENVMIYSQKNYMDL FT DKWSKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLRFFLWPEEMIQEYETLKLMMGS FT ALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLDKNTPICFAGDDMYSPGVLQVRKDY FT EKTLEELTLKAKVHVSEEPLFCGWRMSPYGIIKEPNLILDRWKIAQRSGNLDLCIVNYA FT IEASFGYRLSEYLYDVNIDVDAQQELIREIVEHKHKLPKKIAGLFSDDECEAHSDGDDD FT FLLNDVGREYRIA" FT CDS 5189..5716 FT /codon_start=1 FT /product="unknown" FT /db_xref="UniProtKB/TrEMBL:Q06IY1" FT /protein_id="ABH07009.1" FT /translation="MMSDVSTELLDFLRFGLDRSTLGSGSIESLPLDRCIRLLEGLRNL FT GYSSIDNVLHVLGGGEPDRFQILRVFRAQGVAVSEAYELGLTKSLSFSPRPVSLILDDL FT LDRIARGASFLPVDLGAVNGELVVNFERSRLSVDLYVNNKKVCSRIKYSAGDPKYVQQR FT FSGFKGIVTRSS" FT CDS 5664..6500 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q06IY0" FT /protein_id="ABH07010.1" FT /translation="MSNRGSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYE FT TELIERVFPRRTRKCVIHRELVVKDGRVDCDLDIMDDGLENVDEDEYPLYHVGCIVVAL FT MPHGKNLSGKVVVEVKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGYT FT LHLSVTTTDLDFVDGVHPFSVQLTSIGRFCGEDMKTRYAITEVSKQLHQSILNSEGDGA FT EIPKGVPVQRIPDTLVMPEVYETIKKLGLRTHGSVRKEGGDPSGDRGTRARESGAE" FT CDS 6424..7020 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF4" FT /db_xref="GOA:Q8QYT3" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q8QYT3" FT /protein_id="ABH07011.1" FT /translation="MGQFARRGEIRAVIEELVLARAELSEDTSTGGYDRTMYLNTLFGY FT IALVGTSKKATHYGEVDIVGPNASKKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVVMAELSTYTQLATKMTRSGFKEPQVMFDFASGMDLKTLTLQ FT EATVIQSMHSRLFRTEGAKGVFNAQSSVGEQAVEI" FT CDS 7021..7293 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q8QYT2" FT /protein_id="ABH07012.1" FT /translation="MDDPSFLTGRSTYAKRRRARRMNVCKCGAILHNNKDCRSSTISGH FT KLDRLRFVKEGRVALEGETPVYRTWVKWVETEYHINILETSDDEE" XX SQ Sequence 7342 BP; 2106 A; 1479 C; 2079 G; 1678 T; 0 other; cgaatattta atttgattcc aatcgattat acgtgaccaa aacttactag cactcaagct 60 ctgcgaagta ccttaaagcc agccagtatg tcgatatcag tttcgtccca acgtgttgca 120 gcatccaacc tgttcacgaa cggagctgag gaacaaatta aggccattaa ggagttgaaa 180 agcaagcggt tattggagac cgaacttgga ttggatggct tgtttgacta tttcatccca 240 gatacagtca gagagatact aactggttat ggtatggaat tcagcgtgca ctccttccaa 300 ggacatgctc accccataag caaaatgata gaaaatcata tgttgtatag aatagcaccc 360 cattatttct cagataggac attgattatt agttgtaaag aaagtaaggt caagagacta 420 aagatctcca ataagaatag gaattttaat ttcgcccaat ataatagatt ggtgcatgcg 480 aaggatcatc acagatacga gaatgccacc agagatttag atgtaggctc gctgtgcggt 540 gtaataaacc tggagaaaac ttgtgaatgc gtgtttatcc acgacgaggt tcaatactgg 600 agcttagatg agatgcaaag atttttaggg tctctcgagc acgctaacag ggtggtgtat 660 agcattgtgt accctgcaga ggtggatgct ggtttcaacc aaagtctgtt tccagaggct 720 tacacgtttg atttgcggga tgggaggctt acttggtatc cagatggtaa ggcagaaggg 780 gcctacacac aaccggtaaa tccttggcta ctagggtgca gcaagactat agactcaaag 840 tcaagaagct ggaccatcac aaagctgcag accgttgggg cgcaccatat cttcagtgca 900 gttctgggta gcttcctaac agaggactcg tacaagtacg acaacttcac cgtgatcaac 960 ccgaacgata tactcagggg acgaaggggg tgcaagcctt tgtacttgcg agccaggatg 1020 atcagaccaa ctctgttata cttgtgcgct ctcaagaaag ctgattcgaa ttcagcagtg 1080 gccaagctaa ggatgctaag caatagggaa gagaacatgg acgaggcatt attcgtggcc 1140 cagttggcca aacagatcaa ggataccggg ttgtacgaca ggatgggaaa cccaagcata 1200 aaaagcctgc tctccgaggc attccatgat atcgctggca accttttcac cagactcttc 1260 aataagccag agtatgatgc tcgatgcctg gagaaattca tcagggcttg tgagaccacg 1320 gagttctata tccctaggaa gttcatggag agggtgtaca gaggaagtag cttgatggtg 1380 cagagagtgg tggactgggt ggaagacgag gaagccaatg ccttggatga ggtgaacctc 1440 caagaattgt gcaaaaatga ccgaaaccca gaaccatacg gtgcgttggt gttgaatggt 1500 gataacagga gagcgtacgt tcctatcact agaattatga ggtcacacgc actaatcttg 1560 gagagcgcaa ggtcagtgga aatcaaccgg gtagtcgtgg tatgttctgc acgctcttta 1620 ctgaatctcc gtatgttcct aatccgcttg ggtcgattca gatacatgga aagcaggggg 1680 cttaccgacg tccaagacat gcaagaggct ttggaggatg ggcttctgag tgaggaggag 1740 gtggaggcga gactcttcac gagccaggat acagagagcg aagggagtac cagtgaagag 1800 acggggcaca tagtcgacga acctagaaat gatgaggcgg gtactccccg attctctaaa 1860 gtgcggaatt tgatcaagga agggatcttc accgagcagc taaagggaag agaggtggct 1920 ttctatagcc ggtacagcaa ggactacaaa tatgcagggg gtcaccatcg ctctctaggc 1980 tgggatgatg cccttgatgc gctcatagca gagctgggtt tggatgaaag ctacgatcac 2040 tgcctaatcc agaggtacat gaaagacggg gcaataggtt ttcacgccga tgatgagccc 2100 tgctacctgc caggtggaag cgtagtcacc gtgaatctga atggcgaagc gctcttcgag 2160 gtgaaggaga attctagcgg ggtcataaag aaaatccaca tgaaggacgg ggacgtctat 2220 acaatgggac cagggatgca gcaaacccac aagcatagag tccagtcgct cagtgacggg 2280 cgatgcagta tcacccttcg tgataagact gtggattatg aggcacagag aaaggagggc 2340 tcatctgaat acgaagagga tatagcagat gccgatgaag ggatcgaata cctcaagagg 2400 aattcggcta atatgtgctc gctgaaagcc atagcagaac acatgcagtt aagcatccca 2460 acggtagtct cgatcgtaaa cggggagtcc cctcaaacct tgaaggagat cgaatctggt 2520 ggtgtaagtg tggccacgct ggtgagcctc tcacgcacgc tcggtttccc aattgctcta 2580 catggaaata gggggtttgc gcaaacacaa ggtgattaca ggaagctgca tctgagagta 2640 ggtgatgggc atgtggaacc ctttgagggg gtggcgagtt cgggcggatt aagggaggcg 2700 ctcctcttga gtgatgggat tggtcaaggc atcttccggg tcgacaaggt caaagctgat 2760 agactagctc aaagcttcta cagtgggtgc acaggtgtac ttctgggaaa gtacaacaaa 2820 gggaagatgc atgcggctga attggaggaa ccaactgaag tattgacttc ctttggtttc 2880 gccgggtccg gaaaaagtca ctggtgtcaa accatactcc ggagttgtga tgtcgagaaa 2940 accttggtta taagtcctag gaaggtgctc aaggatgact gggcagggaa gatctcaaag 3000 aagcacaagg tagtgacctt tgaagtcgcg ttcatggacg acttcggatg taaggccatt 3060 gtcatcgacg agataggact gctcccacct ggttacattg atctggtcat ctcagtgttc 3120 catccaaaca ccttagtact actaggtgat ccacttcaaa gctcttacca cagcaaacga 3180 gacaatgtga tcctggaagc aagccaagag gatatcttca acagaataaa gggtgcatta 3240 ccttatctct gctactcgca taggccgccc aagaactgca agatctttga gattgagtgc 3300 atgggaggag aagcagagaa gaggatcacg tttaggtcaa agaggggtaa ggatgaacca 3360 gtgatctgcg ccaccagggc tatgagggaa atgaatgggt caggatggta cacggtgagc 3420 gagactcaag gcttaagctt caagacctgc atgatacaat tgtgcgagca ctgggcaaag 3480 aagaacgacg aggatgtaat ggtggccttt actaggtctc gaggggagat cgccatcagt 3540 gtggacagga agctgaaaga ggtgctattg aggacgtcca agagtgagct cctccggaag 3600 atcctcagcg gcgagacata cagaagatcc agcatcatcg ctctcgtgaa aaagcacatt 3660 cctgaagcct tgattgtctt cgaggaaaac cgcttagcaa gtaacgtgga ctacgaggaa 3720 aggctggcag gagaccccta cctcaagtct ctattatccc tctatgaaga catcgaggaa 3780 gaggaggtgg aaatagagga gccggtagcc cttgagccga taaggactca cttaccgtta 3840 agcgagaagc tgaatgagtt gataccgttt gatctgaagg cgaaggagga cagagagcaa 3900 tacactgagg ctgggcgcac tgaacagata gatgaggagg ggtacggaca atggggggcc 3960 aacccgatga cccacaaggc tctatatctc aggcatacat cagacgatac ggcaaccttc 4020 atgatgtcgg tgaagaagcg tctaaggtat agaagctatg aggggaatag gagaaagtac 4080 ctgagttgtc atggaattgg gcgtcaaatg ttctctgtgc tcaaagagac ttatcagtgg 4140 aaggatatag agtcactgcc ggaactcgag aaatgcgaga aagaattcat gaggaaacgg 4200 gtagaaaaga gcgcagcact gatagaacag cactcaggaa gaagtgatcc cgactggccc 4260 agcaattacc tcaagatctt cctcaagcaa cagacctgca cgaaaatgga gaaaagaggg 4320 gtagatgcaa aggctggaca gaccatagct tgttttgctc actccgtgct atgcaggttc 4380 ggaccgttgc tgcgtcaaac agaaaaggcg ttcagagagc tcctcccaga aaatgtgatg 4440 atctactccc agaaaaacta catggatttg gataagtggt caaaaacctg ggtcgagggc 4500 atgctgggaa cggattcaga ttacgaggcc tttgacagat cccaagacga gaagatactg 4560 gatatggaga tagaggtgct cagattcttt ctctggcccg aggagatgat acaggagtac 4620 gaaacgctca aactgatgat gggcagcgct ctgggtgatt tggccataat gaggttctcc 4680 ggtgaattcg ggaccttctt cttcaatacc ctgagcaaca tggtcttcag ttgcatgagg 4740 taccacttgg ataaaaacac ccctatctgc ttcgctgggg atgatatgta ctcacctgga 4800 gtactacaag tcaggaagga ctacgagaag accctggaag aattgactct caaggctaag 4860 gttcatgtgt ctgaagaacc cctcttctgt ggctggagga tgagcccgta tgggatcata 4920 aaagagccaa atctgattct ggataggtgg aagatagcgc aaagatcagg gaatctggat 4980 ctatgcatcg tgaattacgc tatcgaggcg agcttcgggt accgtttaag tgagtaccta 5040 tatgatgtga atattgatgt tgatgctcag caggaattga tcagagaaat tgtagagcat 5100 aaacacaaac tcccgaagaa gatagccggg ctgttcagtg atgatgagtg cgaggctcat 5160 agcgatgggg acgatgactt cctgttaaat gatgtcggac gtgagtaccg aattgcttga 5220 tttcctccgc ttcggtcttg ataggagtac attaggtagc gggtctatag agtcattacc 5280 cttagatagg tgtattaggt tgttagaagg tttgcgtaat ttaggctact cgtcgattga 5340 taacgtgctc cacgtgttag gagggggtga accagatcgg tttcagatcc ttagagtgtt 5400 ccgggcccag ggggtggcag ttagtgaggc gtacgaacta ggcttaacga aaagtcttag 5460 tttcagccct cgtccagtta gtctgatact ggatgacttg ctagatcgca tagcaagagg 5520 tgcatcattt ctaccggttg acttgggtgc tgtgaacggg gagctagttg tcaatttcga 5580 gcgttctagg ttaagtgtag atctgtatgt taataataag aaggtgtgct caagaataaa 5640 gtactcagca ggggatccca agtatgtcca acagaggttc tcaggattca aagggatcgt 5700 cacacgctct tcatgagata aaggtcttca acgtaaagcg gaacaccaag gatttggaga 5760 ctctgaacaa ggccctgcac cgcggggatg tttacgagac cgagttgata gaaagggtgt 5820 tcccaaggag gacaaggaag tgtgtgatac acagagagct agtggtaaag gatggcaggg 5880 tcgattgtga ccttgatatc atggatgatg gacttgagaa tgtggatgag gatgagtatc 5940 cactatacca tgtcggctgt atcgtggtgg cgctgatgcc ccatggtaag aacctaagtg 6000 gcaaagtggt agtggaggtc aaggacacaa gactgaaaga gcccagctca cggatatcaa 6060 ggagcttcat ggatatgtcc aaacctataa gtgcatgtgc tgatttccct ggttacttca 6120 taagcaccgc ggacttactc aatgggtaca cactccatct ttcagtgacg acgactgacc 6180 tggacttcgt cgatggtgtg cacccgttca gcgtgcagct gacaagcatt gggaggtttt 6240 gcggagagga tatgaagact aggtatgcca tcacagaggt gtcaaagcag ctacaccaga 6300 gcatattgaa ctcagaagga gacggtgctg aaatcccgaa aggggtgcct gttcagcgta 6360 taccggatac tctagttatg ccagaagtgt atgagacaat aaagaagtta ggtttgagga 6420 ctcatgggtc agttcgcaag gaggggggag atccgagcgg tgatagagga actcgtgctc 6480 gcgagagcgg agctgagtga ggacacgagc acaggaggct acgaccgaac aatgtacctg 6540 aatactctct tcgggtacat cgccttggtc ggtactagca agaaggcgac tcattatgga 6600 gaggtagata tagtaggacc taatgcaagt aagaagactg gcctagaccc taggggtaaa 6660 ataaacgtgg ctagcatggt ggcgcgcatg agaactctca gtgcggctgt aagcgagggg 6720 cctgtcaagg gggcaactct gaggcagatg tgcgaaccgt ttgcccaaaa cgcttacgat 6780 ttcctggtcg ttatggctga gttgagtacg tatacgcagt tagcaaccaa gatgactagg 6840 tcgggcttca aggagccaca ggttatgttt gactttgcgt cgggcatgga cttgaagacc 6900 ttaactctgc aggaggctac tgttatacaa tccatgcact ctcgtctctt tcgcactgaa 6960 ggggcaaagg gagtgtttaa cgctcagtcc agcgtcgggg aacaagctgt cgagatatag 7020 atggatgacc catcgtttct cacgggtagg tctacttatg ctaaacgtag gagggccagg 7080 cgtatgaatg tgtgtaagtg tggtgctata ttgcacaata ataaagattg taggtctagt 7140 acaatctcgg gtcataaact tgatcgactc cggttcgtaa aagagggaag agtagcccta 7200 gagggcgaga ctcctgttta tcgaacttgg gtcaagtggg tagagaccga gtatcatata 7260 aatatattag aaacctcaga tgatgaggaa taatcatcta tcctagctat agtaaataaa 7320 ctacttaatg gtaaagcaag ct 7342 //