ID DQ855087; SV 2; linear; genomic RNA; STD; VRL; 7352 BP. XX AC DQ855087; XX DT 02-OCT-2006 (Rel. 89, Created) DT 05-MAR-2008 (Rel. 95, Last updated, Version 3) XX DE Grapevine virus A isolate BMo32-1, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7352 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7352 RA Goszczynski D.E.; RT ; RL Submitted (04-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX RN [3] RC Sequence update by submitter RP 1-7352 RA Goszczynski D.E.; RT ; RL Submitted (03-MAR-2008) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX DR MD5; adc3c6ee66f8be96ceff727bc3205835. DR EuropePMC; PMC4661162; 26640751. XX CC On Mar 4, 2008 this sequence version replaced gi:111145964. XX FH Key Location/Qualifiers FH FT source 1..7352 FT /organism="Grapevine virus A" FT /host="grapevine cv. Merlot" FT /lab_host="Nicotiana benthamiana" FT /isolate="BMo32-1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /note="mechanically transmitted from grapevine cv. Merlot FT to Nicotiana benthamiana acronym: GVA" FT /db_xref="taxon:35288" FT CDS 88..5211 FT /codon_start=1 FT /product="194 kDa protein" FT /db_xref="GOA:B1N165" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:B1N165" FT /protein_id="ACA52189.1" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLETETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRIAPNYFSSNTLVVSCK FT ESKVKRLRLRNANSRNLNIEQYNRLVHAKDHHRYENAFRELDVGNLTNLINKEDHHQCI FT FIHDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRV FT IWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIKGSYLTED FT SYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSS FT REENMDEALFVAQLAKQIKDTALYDKMGNPSLRSILSESFFDIAGNLFTRLFNRPEYDA FT RCLEKFIRACDTTEIHIARRFMEGTRRGAPFKVQDVAEWIADEGANILSEVNFVEVSKD FT DREPSPYGTSAMNPESKRLQVPLTRILRAQSLIMEMQVPVEINLVRIVCSPKALIHLRC FT YLIRLGRFRFMESRAICDIEDLQSGLEEGLLTEDEVEARLLSSESEGECEESIVEIAPE FT RVDEKGEVKYSGVRKLCQESIYTDTLKGREVAFYSRHSKEYSYTGGSHRSLGWDKALDE FT LIVELGLDESYDHCLIQRYSKGGSIGFHADDERCYLPGGSVVTLNLHGEAIFEVKENTT FT GKIKKIKLGDGDVYTMGPGMQQSHKHRVESCTEGRCSVTLRNKTIDYETRQEGNNSEYE FT EDVAELDEGIEYLKKNSGNMCSLKAFADHMQLSIPSVISIVNGVSPQTLREIESGGISV FT ATLVNLSKALDFPVAIHGERGYAETTGDYRKLHLKITAGHVEPFEGVNSRGGFKEALLL FT SDGIGIGRFRVDKSKADRLAQSFHNGNTGVLLGKYNKGKIHAEWLDEPKEVLTAFGFAG FT SGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSKISKEHKVVTFEVAFMDDFGCKDIV FT IDEIGLLPPGYIDLVIAVHRSRVLVLLGDPLQSTYHSKRDNVVLEASQEDVFSRVQGNL FT PYLCYSHRLPKNCKLFELECMGAECEKRVVYRSNRLKDEPVICATRAMKEEKGSGWYTV FT SETQGLSFKSCLIYLDEHWAKKEDEDVMVALTRSRGEIGIHASPALKKSLISTAKSTLL FT RKVLKGETYRRSEIVAMARKHIPEVTVMFEESRLAETVDYEARLAGDPYLKSLLSLYDE FT IEMEEVEIEEPTALEPVKTHLALSEKLNELAPFDLKAKEYREQYTEAGRTEQIDEEGYK FT GENANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNFEANRRKYKACHGIGQQMFSVFK FT EIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIARFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKW FT ARTWVESMTGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCSLG FT DLGVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVCFAGDDMYSPGILRIKKDYEGT FT LEQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKMAKRNGDLSLCLVNYAIEA FT SFGYRLSEHLYDINIDVDAQQELVREIVEKKHLLPKKIADLFSDDECEAYSDGDEDFLS FT KDVAGLYRVG" FT CDS 5183..5713 FT /codon_start=1 FT /product="19 kDa protein" FT /db_xref="UniProtKB/TrEMBL:B1N166" FT /protein_id="ACA52190.1" FT /translation="MSQDCTELVEFLGQSSGSCSSNRGSLESLSYLECLHLLTDLKSLG FT YPSIDNILYILGGGSTDRFEIFRIFRRHGIGIGEALQLGVKKSLCYSPRAVIEILDDLL FT GRLGRGSAFLPCDLGASKGELLITFHPSRLSVDLYVNNKKVCTRVSQVVADSGYVLRRF FT AGYPGIALRTKGS" FT CDS 5655..6491 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q06IY5" FT /protein_id="ABH07005.1" FT /translation="MSSGDSQGTQGSHSEPKEVKIFNVKRSTRDLESLNKSLHRGDVYD FT TELIERVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVAL FT MPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTADLLNGYT FT LHLSISTTDLQFVDGVHPFSVQLMNIGRFCGDDMKTRYAVSEASKILHQNILNSEGDGE FT EIPHGVRVQKVPDTLVMPEVYETIKKLGLKTNGSLRKEGGNEGNHRRAGVDESHSI" FT CDS 6415..7011 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF4" FT /db_xref="GOA:Q06IY4" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q06IY4" FT /protein_id="ABH07006.1" FT /translation="MAHYAKRVEMRAIIEELVLTKATPSENATESGYDRTMYLNTLFGY FT IALVGTSKKAIHYGEVDIVGPKASKKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEI" FT CDS 7012..7284 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q06IY3" FT /protein_id="ABH07007.1" FT /translation="MDDPSFLAGRSTYAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH FT KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDEE" FT 3'UTR 7285..7352 XX SQ Sequence 7352 BP; 2168 A; 1512 C; 2044 G; 1628 T; 0 other; cgaatattta attagattcc catcgactat aagtgaacaa acgttactag cacctgcgct 60 ctgcgaaata cctgtgagtt cacctagatg tcgatatcag tatcctccca acgtgtagca 120 gtatccaacc tctacaccaa cggatctgag gaatcagtta aagcgatcaa agaactgaag 180 agtaaacggt tattggagac cgagacccgg ttagatgggc tatttgacta ctacatcccc 240 gacaccttga gagaaattct ctctggttac ggtatggagt tcagcgttca ttctttccag 300 gggcatgcac acccagtaag taaaatgatc gaaaatcaca tgctgtatag aattgcacca 360 aattactttt ctagcaatac attggtagtt agctgtaaag aaagcaaggt aaagcgtctt 420 agattaagaa atgctaattc aaggaatttg aatatcgagc aatacaacag gctggttcac 480 gcaaaagacc atcacaggta cgagaatgca ttcagagaat tggacgtcgg aaatctgaca 540 aatttgatca ataaagagga tcaccaccaa tgcattttca tacacgacga ggtccaatat 600 tggagcctgg acgagatgca gcgctttcta ggtagtttaa attcagtaaa tagagtagtg 660 tatagcataa tttatccagc agaagtagag gcagggtact ctcaaagcct cttcccagaa 720 gcctatacat ttgatcttaa ggatggcagg gtgatttggt acccagatgg taaagcagag 780 ggtgcataca cccaacctat caacccatgg cttctcagat gctctaaaac aatcgactcc 840 aaggatagag catggactat aacaaagctg caaacggttg gtgctcatca cctttttagt 900 gccatcaagg ggagttatct aacagaagat tcttataaat atgataactt cactgtgatc 960 aaccccaatg atatcctgcg aggaaggagg ggaagcaagc cattgtacct gcgggccaga 1020 atgatcaagc ctactttgct atatctccta gcactcaaga agagcgactc gaattcagca 1080 gtggccaagc taagaatgct aagcagcagg gaagaaaaca tggatgaagc cctttttgtg 1140 gcccagctag cgaagcagat aaaggataca gccttgtacg acaagatggg aaaccccagt 1200 ctacgaagca tcctatccga gtccttcttt gatatagcag gtaacctctt cactcgcctt 1260 ttcaacagac cagaatatga tgcgaggtgc ctagagaagt tcatcagggc ttgcgataca 1320 acagagatcc acatagcccg aaggttcatg gaggggacga ggcgaggagc accatttaag 1380 gtacaggacg tggctgagtg gatagcggat gaaggtgcta acatcctgag cgaggtgaac 1440 tttgtggagg taagtaaaga tgaccgcgag ccgagtccat atgggacatc cgccatgaac 1500 cccgagagta aaagactgca agtgccgtta actagaatcc ttcgggcgca gagtttgata 1560 atggaaatgc aggtaccagt ggagatcaat ctggtgcgca tcgtgtgctc accaaaagcg 1620 ctcatccacc tccgctgcta cctcatcagg ctcggaagat tcagattcat ggagagcaga 1680 gccatatgcg acatcgagga tcttcaatca ggtttggagg aaggtttgct cacggaagat 1740 gaagtagagg cgaggctact atcatcagaa agcgagggcg agtgcgagga aagcatagta 1800 gaaatagccc ctgagcgagt ggatgaaaaa ggggaggtca agtactctgg ggtgcgcaag 1860 ctatgccagg agagcatcta cactgacacc ctaaagggaa gagaggtagc attctacagc 1920 aggcacagca aggaatacag ctacactggt ggctcacacc gatccctggg ctgggataaa 1980 gcactggatg agttaatagt ggaactgggt ctggacgaaa gttatgacca ctgccttatc 2040 caaagatact ccaagggtgg gagtatcggc ttccatgctg atgacgaacg ctgttacttg 2100 cccgggggct ctgtggtaac cctgaaccta cacggtgagg caatcttcga ggtcaaagag 2160 aataccactg gaaagattaa aaaaatcaaa ttgggtgatg gggatgtata cacgatgggg 2220 ccagggatgc agcagtccca caagcacaga gtggaatcct gcacagaagg gcgttgcagt 2280 gtgaccctga ggaataagac catagattat gagaccaggc aggagggaaa taactcagag 2340 tacgaggagg atgtggctga actggacgag ggtattgagt acctgaaaaa gaattccggt 2400 aacatgtgct cactcaaagc cttcgcagac cacatgcagc taagcatccc aagcgtgata 2460 tcaatagtga acggggtttc cccacagacg ctcagggaga tagaaagcgg gggaatcagc 2520 gtagctacac tcgtgaatct ctcaaaagca ttggacttcc cagtagcgat tcacggagag 2580 agaggttacg ctgagaccac tggtgactac agaaagctgc atctgaagat aacggccggt 2640 cacgtggagc cgttcgaagg ggtgaacagt agaggaggct tcaaggaggc attactcttg 2700 agcgacggga tcggcatagg caggttcagg gttgataaga gcaaggctga cagattggct 2760 cagagcttcc acaatgggaa tacgggcgtg ctccttggaa agtacaataa aggtaagata 2820 catgctgaat ggttggatga accaaaagag gtgctcacag cattcggatt tgccggctca 2880 gggaaaagtc actggtgtca aaccatactt aaacactgtg cggtcgagaa ggtgcttgtg 2940 ataagtccaa gaaaggttct caaggatgat tggactagca aaatctcaaa ggaacacaaa 3000 gtggtcacat ttgaggtggc tttcatggat gattttggtt gcaaagatat agtcatcgac 3060 gagatcggtc tgctaccacc tgggtacata gatctggtca tcgcggtgca taggtcaaga 3120 gttctagtcc tactggggga ccccttacag agcacgtatc acagcaaaag ggacaacgtg 3180 gtgctagagg caagtcagga ggatgtcttc tcaagagtgc aagggaattt gccgtacttg 3240 tgctactctc atagactacc aaagaactgc aagctgttcg agctagaatg catgggagcg 3300 gagtgcgaga agagagtagt ctaccgttct aaccgtttga aagatgaacc ggtgatctgc 3360 gccacgagag caatgaaaga ggagaagggg tcagggtggt acaccgtcag tgagacccaa 3420 gggctaagct tcaaatcttg cctaatctac ctggacgagc actgggcgaa gaaggaggat 3480 gaggacgtca tggttgcctt gaccagatca aggggggaaa tcggaattca tgcgagtcca 3540 gctctgaaga agtccctgat atccactgcc aagagcacgc tcctgcgaaa ggtgctcaaa 3600 ggggagacct acagaagatc cgaaattgtt gcaatggcca gaaagcacat cccagaggtc 3660 acagtgatgt tcgaagaaag caggttggct gagaccgtgg attatgaggc tagactcgct 3720 ggtgatccct acctgaaatc gctactctct ttgtacgatg agattgagat ggaggaggtc 3780 gaaatagaag aaccgactgc actcgaaccg gtgaaaactc accttgcgct cagtgaaaaa 3840 ctgaacgagc tagccccttt cgacctcaag gctaaagaat acagggagca gtacactgag 3900 gctgggcgta cagagcagat cgatgaagaa gggtacaaag gagagaatgc caatcctatg 3960 acccacaaag ccctttactt gaggcacaca tcagatgata cggccacctt catgatgtca 4020 gtaaaaaaaa ggttgagatt caggaacttc gaggccaaca gaaggaagta caaagcctgc 4080 catgggatag gccagcagat gttctccgtc ttcaaggaga tctaccaact caaggagata 4140 gactcactac cagagctaga gaggtgtgag atggagttca tgaaaaagag ggtcgaaaag 4200 agcgcaggct taatagagca gcacgctggt aggagtgacc ccgattggcc cagtaactac 4260 ctgaagatct tcctcaagca gcagacctgc acaaagatgg aaaagagggg ggttgatgca 4320 aaagccggac agaccatagc acgctttgca cactcggttt tgtgcagatt tggtcccatc 4380 ctaaggcaga cagagagggc cctgagggag ttgttgccag aaaatgtgat gatctactcc 4440 cagaagaact atatggatct ggataagtgg gcaaggacct gggtggaaag catgaccggc 4500 actgattctg attatgaagc attcgaccga tcacaggacg agaaagtgtt ggatctggaa 4560 gtggaggtgt tacgtttctt tctctggccg gaggatttga tcagggagta tgaggagctc 4620 aaattgatga tgggatgctc attaggggat ctgggggtga tgcgcttttc cggggagttt 4680 ggtacattct tcttcaacac tgtgtgtaac atggtcttta catgcatgcg ttatcacatc 4740 gatcgcaata ccccggtttg cttcgcaggt gatgatatgt actcccctgg aatactaaga 4800 atcaagaagg attacgaggg aacccttgag cagctcaccc tgaaggcaaa ggttcatata 4860 tcggaggaac cacttttctg tgggtggcgg atgagtccat tcgggatagt gaaggagcca 4920 aacctgatcc tggacagatg gaagatggca aagaggaatg gggacctatc gctgtgtctg 4980 gtgaactatg ctatcgaggc aagctttggg tacaggttaa gcgagcacct gtatgacatt 5040 aatattgatg ttgatgcaca gcaggagttg gtaagagaaa ttgtggagaa gaagcactta 5100 ctccccaaga aaatcgccga tctcttcagc gatgatgaat gtgaggctta tagcgacggc 5160 gatgaggatt tcttgagcaa ggatgtcgca ggattgtaca gagttggttg aattcctagg 5220 tcaaagtagc ggtagttgta gttcaaatag agggtcttta gagtctttgt cttacttaga 5280 gtgtctacat ttgttaaccg atttgaagag cttaggatac cctagtatag ataatattct 5340 ttatattctg ggtggtggta gtacggatag attcgaaatc tttcggatct tccggaggca 5400 cggaatcggg atcggagagg ctttacagct aggcgtcaaa aagagtttgt gctacagccc 5460 aagggcagtg attgagatac tggacgatct gctgggcagg ttgggcagag gaagtgcatt 5520 cctaccgtgt gatctagggg caagcaaggg ggagttactg ataactttcc atccatctag 5580 gttaagcgta gatctatacg tcaataacaa gaaggtgtgc acaagagtga gtcaggtggt 5640 tgcggatagc ggatatgtcc tcaggagatt cgcagggtac ccagggatcg cactcagaac 5700 caaaggaagt taagatcttc aatgtcaaga ggagcacgag ggatctggag agtctgaaca 5760 agagcctgca cagaggcgac gtctacgaca cagagctcat agagagggtg ttcccgcgaa 5820 ggaccaagaa atgcgttgtg cacagagaac tcatcgtcaa agacggtcgt gtagattgtg 5880 acctggacct gatggattcc ggtctggacg acgtagatga ggatgagttc cctttgtacc 5940 acgtcggctg catagtcgta gcgctaatgc ctcatggcaa gaatctgcag ggaaaggtag 6000 cagtggaagt ggtcgacacg cgcttgaaga gtggagccgc acggatctca agaagcctca 6060 tggacttatc caagccgctc agcgcttgcg cggacttccc gggttatttc atcagcactg 6120 cagatctgct caacggatac acgttgcatc tatccatcag cacaacggac ctacaatttg 6180 ttgatggtgt gcatccattc agtgtgcagc tgatgaacat tggtaggttc tgcggagatg 6240 atatgaagac gaggtacgca gtctctgaag cgtctaagat cttgcaccag aacatcctga 6300 attcagaggg ggatggcgag gagattccac acggggtgcg cgtgcagaag gtaccagata 6360 ccctagttat gccagaagtt tatgagacaa taaagaagct gggactgaag acaaatggct 6420 cactacgcaa agagggtgga aatgagggca atcatcgaag agctggtgtt gacgaaagcc 6480 actccatctg aaaacgctac tgagagcggc tacgaccgaa ctatgtacct gaatactctc 6540 ttcgggtaca tcgccttggt cggtacaagc aagaaggcga tccactatgg agaggtagat 6600 atagtaggac ctaaagctag caagaaaacg ggtatagacc cacgcgggaa attggtggtt 6660 tcggagttgg ttggaaggat gaggactcta agcgtagccg tcagcgaggg accggtcaaa 6720 ggggcgacac tcagacagat gtgcgaacct tttgcacaga atgcctacga tttcctcgta 6780 ttgatggcgg agatggggac gtattcacag ttagctacaa agatgacaag gtcaggtttt 6840 aaggagccac aggttatgtt cgatttcgca tcgggcttag atctgaaagc actgacatta 6900 caagaagcta ctgtgataca ggctatgcac tctcgtctct ttcggactga aggtgcaaaa 6960 ggagtgttca acgcccaggc ttctgttggc gaacaggctg ttgaaatata gatggatgac 7020 ccatcgtttc tcgcgggtag gtccacgtat gctaagcgta ggcgcgctag gcgcatgaat 7080 gtgtgtaagt gtggtgctat aatgcacaat aataaggatt gcaaatccag tagtatctca 7140 ggtcacaaac tcgacagatt gaggttcgtg aaagagggaa gagtagcctt aacaggcgag 7200 actcctgttt accgaacttg ggtcaaatgg gtggagaccg agtatcatat atatatacta 7260 gaaacctcag acgatgagga atgatcgtct atcctagcta aggagtgaac aataacataa 7320 taataaagca agctaggttg tcatactatg ac 7352 //