ID DQ855086; SV 2; linear; genomic RNA; STD; VRL; 7351 BP. XX AC DQ855086; XX DT 02-OCT-2006 (Rel. 89, Created) DT 11-SEP-2007 (Rel. 93, Last updated, Version 3) XX DE Grapevine virus A isolate GTR1-2, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7351 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7351 RA Goszczynski D.E.; RT ; RL Submitted (17-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX RN [3] RC Sequence update by submitter RP 1-7351 RA du Preez J., Goszczynski D.E., Burger J.T.; RT ; RL Submitted (06-DEC-2006) to the INSDC. RL Genetics, Stellenbosch University, Lab 228 JC Smuts Building, Stellenbosch, RL Western Cape 7602, South Africa XX DR MD5; 3c2737cc8efe4e62f527006e35263031. DR EuropePMC; PMC4661162; 26640751. XX CC On Dec 6, 2006 this sequence version replaced gi:111145959. XX FH Key Location/Qualifiers FH FT source 1..7351 FT /organism="Grapevine virus A" FT /host="grapevine cv. Shiraz" FT /lab_host="Nicotiana benthamiana" FT /isolate="GTR1-2" FT /mol_type="genomic RNA" FT /country="South Africa" FT /collected_by="DE Goszczynski" FT /note="acronym: GVA" FT /db_xref="taxon:35288" FT CDS 87..5210 FT /codon_start=1 FT /product="194 kDa protein" FT /note="ORF1" FT /db_xref="GOA:A1BUH3" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:A1BUH3" FT /protein_id="ABL14358.1" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLETETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRIAPNYFSSNTLIVSCK FT ESKVKRLRLRNANSRNLNFEQYNRLVHAKDHHRYENAFRELDVGNLTNLINKEDHHQCI FT FIHDEVQYWSLDEMQRFLGSLNSVDRVVYSIIYPVEVEAGYSQSLFPEAYTFEVKDGRL FT IWYPDGKAEGAYTQPLNPWLLSCSKTIDSKDRTWTITKLQTVGAHHLFSAIKGSYLTED FT SYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDANSAVAKLRMLSS FT REENMDEALFVAQLAKQIKETALYDKMGNPSLRSILSESFFDIAGNLFTRLFNRPEYDA FT RCLERFIRACDTTEIHINRRFMEGIRRGAPLKVQNVAEWIGDESANSFSEVNFLEVNKD FT DRVPRPYDTSAMENGNRKLRVPLSRILRAHELIMEAQAHVKINTVHVVCSPRALINFRC FT YLIKLGRFRFMESRALCDIEDLQSGLEEGLITEEEVEARLLSSDDEEVAEESEIKTVPR FT EEESGKEMEYTGVRKLCKENIYTEKLKGREVAFYSKHSKEYSYNGGSHRSLGWDKALDE FT LLAELGLDESYDHCLIQRYTKGGSIGFHADDERCYLPGGSVVTLNLHGDAIFEVKENVS FT GKIQEIKLADGDVYTMGPGMQQTHKHRVVSCTEGRCSVTLRNKTTDHETRLEGSNSEYE FT EDVAELDEGIEYLKKNSGNMCSLKAFADHMQLSIPSVISIVNGASPQTLREIESGGISV FT ATLVNLSKALDFPVSIHGERGYAETTGDYRKLHLRITAGHVEPFEGVSSKGGFKEALLL FT SDGIGIGRFRVDKAKADRLAQSFYNGNTGVLLGKYNKGKMHAEGLEEPKEVLTAFGFAG FT SGKSHWCQTILKHCTVDKVLVISPRKVLKDDWTSKISKKHKVVTFEVAFMDDYGCKDIV FT IDEIGLLPPGYIDLIIAVHRPRVLVLLGDPLQSTYHSKRDNMVLEASQEDIFSRVHGKL FT PYLCYSHRLPKNCKLFELECMGAESEKRVVYRSNRMKDEPVICATRAMKEEKGSGWYTV FT SETQGLSFKSCLIYLDEHWGKKEDEDIMVALTRSRGEIGIHVSPTLRKSLISSAKSMLL FT RKVLKGETYRRSEVVAMAKKHIPEVTVMFEESRLAQTVDYEARLAGDPYLKSLLSLYDE FT IEMEEVEVEEPTALEPMKTHLALSEKLNELAPFDLKAKEYREQYTDVGRTEQIDEVGYS FT EESANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNFEANRRKYRACHGIGQQMFSVFK FT DTYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKW FT ARTWVESMTGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEELIKEYEELKLMMGCSLG FT DLAVMRFSGEFGTFFFNTMCNMVFTCMRYHIDRNTPICFAGDDMYSPGVLRVKKDYEGT FT LEQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKIAKRSGSLSLCLVNYAIEA FT SFGYRLSEHLYDINIDVDAQQELIREVVKKKHLLPKKIADLFSDDECEAHSDGDEDFLA FT KDVAELYRVG" FT CDS 5182..5712 FT /codon_start=1 FT /product="19 kDa protein" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:A1BUH4" FT /protein_id="ABL14357.1" FT /translation="MSQNCTELVEFLGQSSGSCGLNKGSLEALSYLECLCLLTDLKSLG FT YPSIDNLLYILGGGSADRFEILRVFRRHGIGIGEALQLGVRKSLCYSPRAVTEILDDLL FT NRLIRGSAFLPSDLGAVNGELLITFHPSRLSVDLYVNNKKACTRVVQGKSDSSYVLRRF FT SGYPGIALRSSGN" FT CDS 5654..6490 FT /codon_start=1 FT /product="movement protein" FT /db_xref="UniProtKB/TrEMBL:Q06IY9" FT /protein_id="ABH07003.2" FT /translation="MSSEDSQGTQGSRSGHQEIKIFNVKRNTKDLETLNKGLHRGDVYD FT TELIEKVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVAL FT MPHGKNLQGKVAVEVLDTRLKGGSARISRSLMDLSKPLSACADFPGYFISTADLLNGYT FT LHLSISTTDLQFVDGVHPFSVQLMNIGRFCGEDMKTRYAVQEASKMLHQNILNSEGDGE FT EIPHGVHVQKVPDTLVMPEVYETIKKLGLKTNGSLRQESGNEGNHRRVGAGESHPN" FT CDS 6414..7010 FT /codon_start=1 FT /product="capsid protein" FT /note="coat protein; ORF4" FT /db_xref="GOA:Q06IY7" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q06IY7" FT /protein_id="ABH07001.1" FT /translation="MAHYAKKVEMRAIIEELVLAKATPTEDATESGYDRTMYLNTLFGY FT IALVGTSKKAIHYGEVDIVGPRASKKMGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEL" FT CDS 7011..7283 FT /codon_start=1 FT /product="RNA silencing suppressor" FT /note="ORF5; RNA-binding protein" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q06IY6" FT /protein_id="ABH07002.1" FT /translation="MDDPSFLAGRSTYAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH FT KLDRLRFIKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDEE" XX SQ Sequence 7351 BP; 2199 A; 1447 C; 2009 G; 1696 T; 0 other; gaatatttaa cttgattccc atcgattata agtgaacaaa cgttattagc acccgcgctc 60 tgcaaaatac ctgtgagttc accgccatgt cgatatcagt atcctcccaa cgtgtagctg 120 tatccaacct ctacacaaac ggatctgaag aatcagttaa agcaatcaaa gagctaaaaa 180 gcaaacggtt gttggaaacc gagaccaggt tagatggatt attcgattac tacatcccag 240 ataccttgag agagattctc tccggttatg gtatggagtt cagtgtccat tctttccagg 300 gacatgctca tccagtaagt aaaatgatag aaaatcatat gttgtacaga atcgcaccaa 360 attatttttc tagcaacaca ttaatagtta gttgtaaaga gagtaaagta aagcgtctta 420 gattgaggaa tgcaaactcc aggaatctaa actttgaaca gtacaatcgc ctcgttcatg 480 caaaggacca tcacaggtac gaaaatgcct ttagagaact cgatgttggc aatctcacaa 540 atttgatcaa caaagaggac caccatcagt gcatttttat tcatgatgag gtacaatatt 600 ggagtttaga cgagatgcag cgtttcctag gtagtttaaa ttcagtagat agggtagtgt 660 acagcattat atatccggta gaagtagaag ctggctattc acaaagcctc tttcccgagg 720 cttatacctt cgaagtcaaa gatggaaggt tgatctggta ccccgatggg aaggcggaag 780 gcgcatacac gcagcccttg aatccttggc tcttgagttg ttcgaaaacc atcgattcca 840 aggatagaac atggacgata accaagctac aaacggtggg cgcccatcac ctcttcagtg 900 cgatcaaagg gagttatctg accgaggact catacaagta tgataacttc acggtgatca 960 accctaatga tatcctgaga ggcagaagag gtagcaagcc attgtatctc cgtgccagaa 1020 tgatcaaacc gacgctacta tatctcttgg cgttgaagaa aagtgatgca aactctgcag 1080 ttgcgaaatt gagaatgttg agcagcagag aagaaaatat ggatgaagcg ctttttgtag 1140 ctcagctcgc taagcaaatc aaggaaacag ccctatacga caagatgggg aacccgagct 1200 taaggagtat cttgtccgaa tcattcttcg atatcgccgg gaatctcttc acgcgtctgt 1260 tcaatagacc cgagtacgat gccaggtgtc tggagcgttt catcagggca tgcgatacca 1320 ccgaaatcca tatcaatcgc agattcatgg aggggataag aagaggtgca ccgctcaaag 1380 tgcaaaatgt agctgaatgg attggagatg agagtgcaaa ctcctttagc gaggtcaatt 1440 tcctcgaagt gaacaaggat gatcgtgtcc cgaggcctta tgatacatcc gctatggaga 1500 atgggaatag aaagttgcga gtgccactgt cgcggatcct cagagcacac gagctgataa 1560 tggaagcgca agcacacgtg aaaatcaata ctgtgcatgt ggtgtgctct cctagggctc 1620 tcatcaattt cagatgctac cttataaaac tgggaaggtt cagattcatg gagagcaggg 1680 ctctatgtga catagaagat ctccagtcag gcttagagga agggttaatc accgaagaag 1740 aagtggaggc caggttattg tcatcagatg atgaggaggt agcagaagag agtgagataa 1800 agaccgtgcc cagagaagaa gagagcggga aagaaatgga gtacactggg gtacgcaaac 1860 tctgcaagga aaacatctac accgagaagc tcaaaggaag agaggtagcc ttttacagta 1920 agcacagcaa agaatacagc tacaacgggg gttcgcaccg ttccctgggt tgggataagg 1980 ctttggacga gcttttggct gaactaggtc tcgatgagag ttacgatcat tgcctcatac 2040 aaagatacac caagggtggt agtattggat ttcacgcgga tgatgaacgc tgctacctac 2100 caggggggtc cgtggtcaca ttgaacctcc atggtgatgc aatattcgag gtcaaggaga 2160 acgtctcagg gaagatacaa gagatcaagc tcgcggatgg ggatgtatac accatgggcc 2220 caggaatgca acaaacccat aagcatagag tggtttcatg tacagaaggt cgctgcagtg 2280 ttactctgcg gaacaaaacc acggaccatg agaccaggct cgaagggagc aattcagagt 2340 atgaagagga tgttgctgaa ttggatgaag gcatcgaata cctgaagaaa aactcaggta 2400 acatgtgctc tctcaaggct ttcgctgatc acatgcaatt aagcatccct agcgtgatat 2460 cgatagtgaa cggagcatct cctcaaactc tgagggagat agaaagtgga ggcattagcg 2520 tggcaaccct tgtcaacctc tctaaagcat tggatttccc agtatccatt catggcgaac 2580 ggggctatgc tgagacaacc ggggattata gaaagctgca tctgaggatc acggccggtc 2640 atgtggaacc attcgagggc gtgagtagca aaggaggatt caaagaggcg ctactattga 2700 gcgatggaat cggcatcggt aggtttcggg tggataaggc gaaagcggat aggctagctc 2760 agagtttcta caacggaaac acgggtgtgc tactcgggaa gtacaataag ggcaagatgc 2820 atgctgaggg gctggaggag ccaaaggagg tgctcacggc atttggattc gcaggctcag 2880 ggaaaagtca ctggtgtcaa accatactta aacactgtac cgtagataaa gtgcttgtga 2940 taagtcccag gaaggtgctc aaggacgatt ggacaagtaa gatatcaaag aagcacaaag 3000 tggtcacttt tgaagtggca ttcatggatg actacgggtg caaggatata gtcattgatg 3060 agattggtct tctaccacct gggtatatag acctgatcat cgcagtgcac cgcccgagag 3120 tcctagtcct gctaggagac cccctccaga gcacatacca tagcaagaga gacaatatgg 3180 tacttgaagc aagccaagag gacatcttct caagggtgca cggtaaactg ccatatttgt 3240 gctattcaca tagattgcct aagaattgca aattgttcga gctagaatgc atgggggccg 3300 agagcgagaa gagggtggtc taccgttcca accgcatgaa ggatgagccg gtgatttgtg 3360 caacgagggc tatgaaggaa gaaaagggat ccggatggta cacggtaagt gaaacccagg 3420 ggttaagctt caagtcctgt ctaatctatt tggatgaaca ttgggggaag aaagaagatg 3480 aggatattat ggtggctctc accagatcca gaggtgagat aggtatacat gtgagcccaa 3540 cactgagaaa gtctctgata tcctctgcta aaagcatgct cttgcgaaag gtactcaaag 3600 gggaaactta cagaagatcg gaggttgtag cgatggccaa gaagcacatc ccagaggtca 3660 cggtgatgtt cgaagagagc agactggctc aaacagtgga ttatgaggcc agactagcag 3720 gtgacccgta cctgaagtct ctgctatcac tgtatgatga gattgagatg gaggaggtcg 3780 aagtggagga gccaacagcc ctagaaccaa tgaagacaca tctagctctc agtgaaaaat 3840 tgaatgaact ggcccctttt gatctcaagg caaaggagta cagggagcag tacactgatg 3900 ttggacgcac agagcagata gatgaggtag ggtacagtga ggagagtgcg aacccgatga 3960 ctcacaaagc cctctatttg aggcacacat ctgatgatac ggccacattc atgatgtcag 4020 tgaagaaaag attgaggttc aggaatttcg aggcaaacag gagaaagtac agggcgtgtc 4080 atggaatagg ccagcaaatg ttctctgtgt tcaaggacac ataccagcta aaggagatag 4140 attcactgcc tgaactcgaa agatgtgaaa tggagttcat gaagaaaaga gtcgagaaaa 4200 gtgcggggct gatagagcaa catgctggga ggagtgaccc agattggccg agcaattacc 4260 tgaaaatctt cctaaaacag caaacctgca cgaagatgga gaagagaggt gtggatgcaa 4320 aagctgggca aaccattgca tgctttgcgc actctgtact atgcagattc ggaccaattc 4380 taaggcagac agagcgggcg ttgagggaat tattgccgga gaatgtcatg atctactctc 4440 aaaagaacta catggaccta gacaaatggg cgaggacatg ggtagaaagc atgaccggga 4500 ctgattctga ttatgaggca tttgatcgtt cacaggatga gaaggtgcta gatttggagg 4560 tcgaagtact gcgcttcttc ctctggccag aggagctaat caaagaatat gaagagctca 4620 agttaatgat gggatgctca ttgggggatc tggccgtgat gcgattctca ggagaattcg 4680 gcacgttctt cttcaatacg atgtgcaaca tggtcttcac gtgcatgcgc taccacatag 4740 accgtaacac cccgatctgc tttgccgggg atgacatgta ctcacctggg gtactaaggg 4800 tcaagaagga ttacgagggg actctcgaac agctcactct gaaggcaaag gtgcacatat 4860 ccgaagaacc actcttctgt gggtggcgga tgagcccttt tgggattgtc aaagaaccga 4920 atctgatcct tgatagatgg aagatcgcaa agaggagtgg gagtttgtcc ttatgcctag 4980 tgaattatgc gatagaggct agttttgggt acaggttaag tgagcacctg tatgacatca 5040 atattgatgt tgatgcacag caagagctaa taagagaagt ggttaaaaag aagcatctgc 5100 taccaaagaa aatcgctgat ctgttcagcg atgatgaatg tgaggcccac agcgacggtg 5160 atgaagattt cctagccaaa gatgtcgcag aattgtacag agttggttga atttttaggt 5220 cagagtagtg gtagttgtgg tctgaataaa gggtctttag aagccttgtc atacctagag 5280 tgtttgtgtt tactaacaga tttgaagagt ttagggtatc ctagtataga taaccttctg 5340 tacatattgg gtggtggtag tgcggataga tttgaaatcc ttcgagtctt ccggaggcac 5400 ggaatcggga ttggagaggc tttacagcta ggcgtcagaa aaagtttgtg ctacagtcca 5460 agggcagtaa cagaaatact tgatgatctc ttgaacagac tgatcagagg gagtgcattt 5520 ctaccaagtg atctaggggc cgtgaacggg gagttactga taactttcca tccatctagg 5580 ttaagcgtag acctgtacgt caataacaag aaggcgtgca caagggtggt tcagggcaaa 5640 tcggacagca gctatgtcct cagaagattc tcagggtacc cagggatcgc gctcaggtca 5700 tcaggaaatt aagatcttca atgtgaagag gaatacaaag gacctggaga ccctaaacaa 5760 ggggctgcat agaggggatg tctacgacac tgagctgata gagaaggtgt tcccgcgaag 5820 aaccaagaaa tgcgtggtac atagagaact catcgtcaag gacggtcgtg tagattgcga 5880 tttggatctg atggactccg gtctggacga cgttgatgag gatgagttcc ctttgtacca 5940 cgtcgggtgt atagtcgtgg ctctgatgcc ccatggtaag aacttgcagg gcaaagttgc 6000 agttgaagta ctggacacga gactaaaagg cggttcggct cgaatctcaa gaagcctcat 6060 ggacttatcc aagccgctca gcgcatgcgc tgacttcccc ggttacttca taagcactgc 6120 ggatctgctt aacgggtaca cgttgcatct ttccatcagt acaactgatc tgcagttcgt 6180 tgatggagtg catccgttta gcgtacagtt gatgaatatc ggtaggttct gcggtgagga 6240 catgaagaca aggtatgctg tccaggaagc gtcaaagatg ctgcatcaaa acatcctgaa 6300 ttcagagggg gatggtgagg agattccaca tggtgtgcac gtacagaaag taccggatac 6360 cctagttatg ccagaagttt atgagacaat aaagaagctg gggttgaaga caaatggctc 6420 attacgccaa gaaagtggaa atgagggcaa tcatcgaaga gttggtgctg gcgaaagcca 6480 ccccaactga agacgctact gagagcggct acgaccgaac aatgtacctg aatactctct 6540 tcgggtacat cgccttggtc ggtactagca aaaaggcgat ccactatggg gaggtagata 6600 tagtaggacc tagagctagt aagaaaatgg ggatagaccc gcgcggaaag ttggttgtat 6660 ctgagctggt gggaaggatg agaactctga gtgtggctgt tagcgaggga cccgtgaaag 6720 gggcaacgct taggcaaatg tgcgagcctt ttgcacaaaa cgcttatgat ttccttgtcc 6780 tgatggcgga gatgggtacc tactcacagt tagcaactaa gatgacaagg tcaggcttta 6840 aggagccaca ggttatgttc gattttgcat cgggcttaga tctgaaagca ctgacattac 6900 aagaagctac tgtgatacag gctatgcact cacgcctctt tcgaacagag ggcgcgaaag 6960 gggtattcaa cgctcaggct tcagttggcg agcaggctgt cgagttatag atggatgacc 7020 catcgtttct cgcgggtagg tccacgtatg ctaaacgtag gcgcgctagg cgcatgaatg 7080 tgtgtaagtg tggtgctata atgcacaata ataaggattg taaatccagt agtatctctg 7140 gtcacaaact tgatagattg aggttcatta aagagggaag agtagctcta acgggcgaga 7200 ctcctgttta tcggacctgg gtcaagtggg ttgagaccga gtatcatata tatatacttg 7260 aaacctcaga cgatgaggaa taatcgtcta tcctagctaa ggagtagaca ataatataat 7320 aatgaagcaa gctaggttgt cacacgaaga c 7351 //