ID   DQ855085; SV 1; linear; genomic RNA; STD; VRL; 1277 BP.
XX
AC   DQ855085;
XX
DT   02-OCT-2006 (Rel. 89, Created)
DT   11-SEP-2007 (Rel. 93, Last updated, Version 2)
XX
DE   Grapevine virus A isolate MSH18-1 movement protein gene, partial cds; and
DE   capsid protein and RNA-binding protein genes, complete cds.
XX
KW   .
XX
OS   Grapevine virus A
OC   Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus.
XX
RN   [1]
RP   1-1277
RX   DOI; 10.1111/j.1365-3059.2007.01624.x.
RX   AGRICOLA; IND43950712.
RA   Goszczynski D.E.;
RT   "Single-strand conformation polymorphism (SSCP), cloning and sequencing
RT   reveal a close association between related molecular variants of Grapevine
RT   virus A (GVA) and Shiraz disease in South Africa";
RL   Plant Pathol. 56(5):755-762(2007).
XX
RN   [2]
RP   1-1277
RA   Goszczynski D.E.;
RT   ;
RL   Submitted (17-JUL-2006) to the INSDC.
RL   Virology, Plant Protection Research Institute, Private Bag X134,
RL   Queenswood, Pretoria 0121, South Africa
XX
DR   MD5; c8b1d2a89d4f4dc319eac3a0c4f2cfca.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..1277
FT                   /organism="Grapevine virus A"
FT                   /host="grapevine cv. Shiraz"
FT                   /lab_host="Nicotiana benthamiana"
FT                   /isolate="MSH18-1"
FT                   /mol_type="genomic RNA"
FT                   /country="South Africa"
FT                   /note="acronym: GVA"
FT                   /db_xref="taxon:35288"
FT   CDS             <1..>234
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF3; coding region disrupted by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:Q06IZ3"
FT                   /protein_id="ABH06999.1"
FT                   /translation="LNKALHRGDVYDTELIEKVFPRRTKKCVIHKELIVKDGRVDCDLD
FT                   IMDEGLDDIDEVEFPLYHVGCIVVALMPHGKNL"
FT   gap             235..334
FT                   /estimated_length=unknown
FT   CDS             <335..434
FT                   /codon_start=2
FT                   /product="movement protein"
FT                   /note="ORF3; coding region disrupted by sequencing gap"
FT                   /db_xref="UniProtKB/TrEMBL:Q06IZ2"
FT                   /protein_id="ABH07000.1"
FT                   /translation="KKLGLKTNGTLRQEGRDKGDNRGVGAGESPAN"
FT   CDS             358..954
FT                   /codon_start=1
FT                   /product="capsid protein"
FT                   /note="ORF4"
FT                   /db_xref="GOA:Q06IZ1"
FT                   /db_xref="InterPro:IPR008879"
FT                   /db_xref="UniProtKB/TrEMBL:Q06IZ1"
FT                   /protein_id="ABH06997.1"
FT                   /translation="MAHYAKRVEIRAIIEELVLAKAQPTEDASESGYDRNMYLNTLFGY
FT                   IALVGTSKKAAHYGEVDIVGPKASKKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA
FT                   TLRQMCEPFAQNAYDLLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ
FT                   EATVIQAMHSRLFRTEGAKGVFNAQSSVGEQAVEI"
FT   CDS             955..1227
FT                   /codon_start=1
FT                   /product="RNA-binding protein"
FT                   /note="ORF5"
FT                   /db_xref="InterPro:IPR008891"
FT                   /db_xref="UniProtKB/TrEMBL:Q06IZ0"
FT                   /protein_id="ABH06998.1"
FT                   /translation="MDDPSFLAGRSTFAKRRRARRMNVCKCGAIMHNNKDCRSSSISSH
FT                   KLDRLRFVKEGRVALTGETPVYQTWVKWVETEYHIYIIETSDDED"
FT   3'UTR           1228..>1277
XX
SQ   Sequence 1277 BP; 339 A; 245 C; 336 G; 257 T; 100 other;
     ctgaacaagg ccctgcacag aggcgatgtg tacgatactg agctcataga gaaggtcttc        60
     cccaggagaa caaagaagtg cgtgatccac aaggaactca tagtcaagga tggtcgcgtg       120
     gactgtgacc tggacataat ggatgagggc ctggacgaca tagacgaggt ggaattcccg       180
     ctctatcatg tagggtgcat tgtggtggca ctgatgcccc atggcaagaa tctannnnnn       240
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn       300
     nnnnnnnnnn nnnnnnnnnn nnnnnnnnnn nnnnaaagaa acttgggttg aagacaaatg       360
     gcacactacg ccaagagggt cgagataagg gcgataatag aggagttggt gctggcgaaa       420
     gcccagccaa ctgaagacgc ttctgagagc ggctacgacc gaaatatgta cctgaatact       480
     ctcttcgggt acatcgcctt ggtcggtaca agcaaaaagg cggcccacta tggggaggta       540
     gatatagtag gtcctaaagc tagcaaaaag actggaatag atccgagggg aaagttggtc       600
     gtatctgaat tggtcggcag aatgcgcacg ctgagtgtgg cagtgagcga ggggcccgtc       660
     aagggtgcaa ctctgaggca gatgtgcgag ccattcgcac agaatgctta tgatctcctc       720
     gtcctgatgg ctgaaatggg cacatattca cagttagcta ccaagatgac taggtcaggc       780
     ttcaaggagc cacaggttat gttcgacttt gcgtcgggct tagatctgaa agcgctgaca       840
     cttcaagaag ctactgtgat acaggccatg cactctcgcc tctttcgcac ggaaggcgca       900
     aagggagtat tcaacgctca gtcatcagtc ggcgagcagg ctgtcgaaat atagatggat       960
     gacccatcgt ttctcgcggg taggtccacg tttgctaagc gtaggcgcgc taggcgcatg      1020
     aatgtgtgta agtgtggtgc tataatgcac aataataagg attgtagatc cagcagtatc      1080
     tcaagtcata aactcgacag actacggttc gtgaaagagg gaagagtagc cttaacgggc      1140
     gagactcctg tttaccaaac ctgggtcaaa tgggttgaga ctgagtatca tatatatata      1200
     atagaaacct cagacgacga ggattagtcg tatatcctag ctaaggagta aagtataact      1260
     taataataaa gcaagct                                                     1277
//