ID DQ855084; SV 2; linear; genomic RNA; STD; VRL; 7351 BP. XX AC DQ855084; DQ909074; XX DT 02-OCT-2006 (Rel. 89, Created) DT 11-SEP-2007 (Rel. 93, Last updated, Version 4) XX DE Grapevine virus A isolate GTG11-1, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7351 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7351 RA du Preez J., Goszczynski D.E., Burger J.T.; RT "Molecular characterization of GVA sequence variants"; RL Unpublished. XX RN [3] RP 1-7351 RA Goszczynski D.E.; RT ; RL Submitted (17-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX RN [4] RC Sequence update by submitter RP 1-7351 RA du Preez J., Goszczynski D.E., Burger J.T.; RT ; RL Submitted (02-OCT-2006) to the INSDC. RL Genetics, Stellenbosch University, JC Smuts Building Block A Lab 228, RL Stellenbosch, Western Cape 7600, South Africa XX DR MD5; 0b291ca9404ae41dd4374c0d5298c1d8. DR EuropePMC; PMC4661162; 26640751. XX CC On Oct 3, 2006 this sequence version replaced gi:111145949. XX FH Key Location/Qualifiers FH FT source 1..7351 FT /organism="Grapevine virus A" FT /host="grapevine cv. Shiraz" FT /lab_host="Nicotiana benthamiana" FT /isolate="GTG11-1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /identified_by="D. E. Goszczynski" FT /note="acronym: GVA" FT /db_xref="taxon:35288" FT CDS 87..5210 FT /codon_start=1 FT /product="replication-related protein" FT /note="GVA 194 kDa" FT /db_xref="GOA:Q06IZ7" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q06IZ7" FT /protein_id="ABH06996.2" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLETETRLDGL FT FDYYIPDTLREILTGYGMEFSVHSFQGHAHPVSKMIENHMLYRIAPNYFSSNTLIVSCK FT ESKIKRLRLKNANNRNLNFTQYNRLVHAKDHHRYESAFRELDVGNLTNLISKENQSECI FT FIHDEVQYWSLDEMQRFLGSLSKVDRVVYSIIYPSEVEAGYSQSLFPEAYTFDLKNGRL FT VWYPDGKAEGAYTQPVNPWLLRCSKTEDSKGRPWTITKLQTVGAHHLFSAIKGSYLTEE FT SYKYDNFTIINPNDILRGRRGGKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSS FT REENMDEALFVAQLAKQIKDTALYDKMGNPNLRSILSESFYDIAESLFTRLFNRPEYDA FT RCLEKFIRSCDTTELHVERRYMEGIRRGAPFKVQNIIDWVEDDSANALSEVNFLEISWN FT DRIRTPYSTVGSHIAESKIRVPITRILRAHELITGAQEDVEINLPRFVCSARALMHFRR FT YLIKLGRFRFMESRAIKDIEDIQAGLEEGVITEEEAELRLLPSATPNVTVALIEETAPG FT PSEEMGKERFLGARNLCREEIYSEKLKGREVAFYSNHSREYKYNGGAHRSLGWDRALTE FT LRQELGLDDSYDHCLIQRYTAGGSIGFHADDEPCYLPGGSVVTVNLFGDATFEVKENKS FT EKIEKKELHDGDVYVMGPRKQQTHKHRVTSHTDGRCSITLRNKTVDYETRRGDDGSEYE FT EDKAELDEGIDYLQKNQSNMCSLKAFADHMQLSIPSVIAVVNGASPQTLREIEDGGISL FT ATLVNLSKALDFPIAIHGERGYAETSGSYRRLHLKITSGHVEPFEGVTSKGGFKEAMLL FT GDGVGLGHFRVDKAKADRLAQSFYNGNTGVLLGKYNKGKMHASETEGSMEVLTSFGFAG FT SGKSHWCQTILKHCSVEKVLVISPRKVLKDDWVAKISKKHKVVTFEVAFMDDYGCKDIV FT IDEIGLLPPGYIDLVIAAHQPRTLVLLGDPLQSTYHSKRDNVVLEASQEDVFARIQGRL FT PYLCYSHRLPRNCKLFELECMGAESEKRVVYRSSRLKDEPTICATRAMKEEKGSGWYTV FT SETQGLSFKSCLIYLDEHWAKKEDEDVMVALTRSRGEIGIHVTPALKKHLITNAKSTLL FT KKVLKGETYRRSEIVSMVRKHIPDTTVLFEESRLAETVDYEARLAGDPYLKSLLALYDE FT IEMEDVEIEEPVALEPTKTHLALSAKNNELAPFDLKAKEYREQYTDAGRTEQIDEEGYQ FT GETGDPMTHKALYLRHTSDDTATFMMSVKKRLRFRNYEANRRKYKACHGIGHQMFSVFK FT DTYQLKEIDSLPELERCEMEFMRKRIEKSTGLIEKHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTEKALRELLPENVMIYSQKNYMDLDKW FT AKTWVESMMGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEELIKEYEELKLMMGCALG FT DLAVMRFSGEFGTFFFNTVCNMVFSCMRYHMDRNTPICFAGDDMYSPGILRVKKDYETT FT LEQLTLKAKVHVSEEPLFCGWRMSPFGIIKEPNLILDRWKIAKRSGNLSLCLVNYAIEA FT SFGYRLSEHLYDVNIDVDAQQELVREIVVKKHLLPKKISDLFSEDECEAHSDGDDDFLN FT NDVAKLYRIE" FT CDS 5179..5712 FT /codon_start=1 FT /product="unknown" FT /note="GVA 19 kDa" FT /db_xref="UniProtKB/TrEMBL:Q06IZ4" FT /protein_id="ABI98900.1" FT /translation="MTSQNCTELNEFLGHGSSSNSLSGGSLESLSNAQCLHLLRDLRDL FT GYKSIDSILYILGGGEAERFEIFRIFRRHGIGIGEALQLGVRKSLSYSPRGTAEILDDL FT LSRIGRGSAFLPCDLGAVRGELIVTFHSARLSVDLYINNKKVVTKFAQAEGDANYAAGR FT FSGYKGLVLRTARH" FT CDS 5654..6490 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3; GVA 31 kDa" FT /db_xref="UniProtKB/TrEMBL:Q06IZ8" FT /protein_id="ABH06995.2" FT /translation="MRQEGSLVTKASSSEPRDIKVFNVKRNTRDLESLNKSLHRGDVYD FT TELIEKVFPRRTKKCVIHKELIVKDGRVDCDLDIMDEGLDDIDEVEFPLYHVGCIVVAL FT MPHGKNLQGKVAVEVLDTRLKDGAARISRTLMDMSKPLSACADFPGYFISTSDLLNGYT FT LHLSITTTDLQFVDGVHPFSVQLMSIGRFCGEDMKTRYAITEASKMLHQNILNAEGDGE FT LIPRGVQVQKVPDTLVMPEVYETIKKLGLRTNGTLRQEGGDKGDNRRAGAGESPAN" FT CDS 6414..7010 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF4; coat protein; GVA 22 kDa" FT /db_xref="GOA:Q06IZ6" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q06IZ6" FT /protein_id="ABH06993.1" FT /translation="MAHYAKRVEIRAIIEELVLAKAQPTEDATESGYDRNMYLNTLFGY FT IALVGTSKKAVHYGEVDIVGPKASKKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQSSVGEQAVEI" FT CDS 7011..7283 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5; GVA 10 kDa; suppressor" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q06IZ5" FT /protein_id="ABH06994.1" FT /translation="MDDPSFLSGRSTFAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH FT KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDED" FT 3'UTR 7284..7351 XX SQ Sequence 7351 BP; 2223 A; 1596 C; 1990 G; 1542 T; 0 other; gaatatttaa cttgattccc atcgattata agtgaacaaa cgttgccagc acccacgctc 60 tgcgaagcac ctgctaattc actaccatgt cgatatcagt atcctcccaa cgtgttgcag 120 tctccaacct gtacactaac ggatctgagg aatcggttaa agcaattaag gagttgaaaa 180 gcaaacggtt attggaaacc gaaaccaggc tagatggatt atttgattac tacataccag 240 acaccttgag agaaattctc acaggttacg gtatggagtt cagtgtccat tctttccagg 300 gacatgctca ccccgtaagc aaaatgattg aaaaccacat gctgtacaga atagcaccca 360 attatttctc tagtaacaca ttgatagtta gttgtaaaga gagtaagata aagcgtctac 420 gtctcaagaa cgcaaataat aggaatttga acttcacaca gtacaacagg ctggtgcatg 480 caaaagatca ccacaggtat gaaagtgcat ttagagaact cgacgttgga aatctaacaa 540 acctgatcag caaggagaat cagagtgaat gcatatttat acatgatgaa gttcaatact 600 ggagtttaga cgagatgcag agattcttag gtagtttatc taaagtagat agggtagtgt 660 acagtatcat atacccatcc gaagtagagg caggatactc gcaaagcctg ttcccagagg 720 cgtacacgtt cgatttaaag aatgggaggt tggtatggta cccagacggg aaggcagagg 780 gggcctacac gcagccggtg aatccttggt tgctacgatg ctctaaaaca gaggactcga 840 aggggcggcc atggaccatc acgaagctcc aaacagtcgg tgcacatcac ctcttcagtg 900 caataaaggg cagttaccta acggaggaat catacaagta tgataacttc accatcataa 960 accctaatga catcctgaga gggaggagag gaggaaagcc actctacctg agagcacgca 1020 tgatcaaacc aaccctactg tacctcttag ccctgaagaa gagcgactca aactccgccg 1080 tcgccaagct gaggatgcta agcagtagag aggagaatat ggatgaagca ctcttcgtag 1140 cacagctggc caagcagatc aaagatacgg ctctgtatga caagatgggg aacccaaacc 1200 taaggagcat actgtcagag tcgttctatg atatagcaga gagcctcttc actcggctat 1260 tcaaccgccc agaatatgat gcaaggtgcc tcgagaaatt cataagaagc tgtgacacca 1320 cggagctgca cgtggaacgg agatacatgg agggcataag aagaggggcc ccattcaagg 1380 tgcaaaacat catagactgg gtagaggacg acagcgccaa tgccctaagc gaggtgaatt 1440 tcctggaaat cagctggaat gacaggatcc gcacacccta cagcacagtg ggcagccata 1500 tagccgaaag caagataaga gtccctatca ctagaatact cagggctcat gaactgataa 1560 caggcgccca ggaggatgtt gagattaatc ttccacggtt tgtctgctcc gcaagggccc 1620 tcatgcactt cagacggtac ctcatcaaac ttgggagatt cagattcatg gagagcagag 1680 ccatcaagga catagaggac atacaagcag ggcttgaaga aggtgtaata acagaggaag 1740 aagccgagct gcgcttactc ccatccgcta cgcctaatgt caccgtggcc ttaatagaag 1800 agaccgcacc aggcccaagt gaggaaatgg gtaaagagag gttcctaggt gccagaaatc 1860 tgtgccgaga ggaaatctat tctgagaagc taaagggtcg agaggtggca ttctacagca 1920 accacagcag ggagtacaag tacaacgggg gagctcaccg ctctctcggt tgggatagag 1980 ctctaaccga actcaggcaa gaattgggcc tggatgacag ctatgaccac tgcctgattc 2040 agaggtacac agcaggcggg agtatagggt tccacgcgga cgacgaacct tgctatctac 2100 ccgggggctc agtcgtcacc gtcaatctat ttggggatgc taccttcgaa gtcaaggaga 2160 ataagtccga aaagatcgag aagaaggagc tacatgatgg agacgtgtac gtgatgggac 2220 caaggaaaca gcaaacccac aagcacaggg tcacctccca cactgacggt cgctgcagca 2280 tcacccttcg gaacaagacc gtcgattatg agaccagaag gggtgatgac ggctctgagt 2340 acgaagaaga caaagctgaa ctggatgaag gcattgatta cctccagaag aaccaaagca 2400 acatgtgctc tttgaaggca ttcgcagatc atatgcaatt gagcatccca agtgtcatag 2460 ccgtagtcaa cggggcatct ccacaaaccc tgagagaaat agaggacggc gggatcagcc 2520 tggccacact tgtgaacctc tcgaaagctc tagactttcc aatcgctata cacggagaaa 2580 gagggtacgc cgagacgtct ggatcctaca gacgcctgca cttgaaaatc acctcaggac 2640 acgtggaacc tttcgagggg gtgacaagta agggcggttt caaagaggca atgctactcg 2700 gggacggcgt aggactaggg cacttcaggg tggacaaagc caaggcggat cgactggcgc 2760 aaagcttcta taacgggaat acaggggttt tactcggcaa atacaacaag ggcaagatgc 2820 atgcaagcga aacggagggg tcaatggaag ttctaacctc cttcggcttc gcaggatcag 2880 ggaaaagtca ctggtgccaa accatactta aacactgttc cgttgagaaa gtgctcgtaa 2940 tcagccccag gaaagtgctc aaagatgact gggtagcaaa gatatccaag aaacacaaag 3000 tggtaacatt cgaggtggca ttcatggacg attacggctg taaggatatc gtaatagacg 3060 agattgggct cctgccaccc ggttatatag atctggtgat cgctgctcac caaccacgca 3120 cccttgtact cttgggcgat ccgcttcaaa gcacctacca cagcaaacgc gacaatgtgg 3180 tgctagaggc cagtcaggag gatgtatttg ctagaataca aggaagattg ccatacttat 3240 gctactctca taggctccca agaaattgca aactgttcga attagaatgc atgggtgctg 3300 agagtgagaa gagagtagtg taccgctcat ccagattgaa agacgagccc acgatctgcg 3360 ctactagggc catgaaagag gagaaagggt ccggttggta caccgtcagt gagacacagg 3420 gtctaagctt caaatcatgt ctcatctatc tagatgagca ttgggccaag aaggaggacg 3480 aagatgtgat ggtcgccctc acccgctctc gtggtgagat agggatacac gtcactccag 3540 cactgaagaa gcatctgatc acaaatgcaa agagcacact gctgaagaaa gtgctcaagg 3600 gtgagactta cagaagatca gaaatcgtat caatggtccg gaagcacata ccagatacca 3660 ctgtgctatt tgaagaaagc agactagcag agacagtgga ctatgaggca agactggccg 3720 gtgatccgta tctcaaatcc ctcctagcct tgtatgacga gatcgaaatg gaggatgtag 3780 aaatcgaaga gccagtcgcg ctcgaaccca caaagaccca tttagccctg agcgcaaaga 3840 acaatgagct cgcacctttc gatctcaagg cgaaagagta ccgggagcaa tacaccgatg 3900 ccgggcgaac tgagcagata gatgaggaag ggtatcaggg cgaaacaggc gaccccatga 3960 cccacaaggc tttgtaccta agacacacat ctgacgacac agcaacattt atgatgtccg 4020 tcaagaaaag gctgcgcttc aggaactatg aggcaaacag aaggaagtat aaagcctgtc 4080 acggtatagg gcatcaaatg ttctcagtct tcaaggacac ataccagctg aaggaaatag 4140 attcgctacc cgaactggag aggtgcgaga tggaattcat gagaaagaga atagagaaaa 4200 gcactgggct tatcgagaaa catgctggca ggagcgaccc agactggccc agcaattacc 4260 tcaagatatt tctgaagcag cagacctgca ctaagatgga gaaaaggggt gtagacgcaa 4320 aggccgggca gaccatagca tgcttcgcgc attcagtctt gtgcagattt gggcccatct 4380 taagacagac agagaaagca ttgagggagc ttctgccaga aaatgtgatg atatattcgc 4440 agaagaacta catggatctc gacaaatggg cgaaaacctg ggtggagagc atgatgggga 4500 cagactccga ctatgaagca ttcgacaggt cacaggacga gaaagtgtta gatctggagg 4560 ttgaagtcct gcgtttcttc ttgtggccag aggagctaat aaaggaatat gaggagctga 4620 agctgatgat ggggtgtgct ttgggtgatc tggcagtcat gaggttttcg ggggagttcg 4680 ggaccttctt ctttaacacc gtgtgcaaca tggtgttcag ttgtatgcgt taccacatgg 4740 acagaaacac ccccatatgc tttgcggggg atgacatgta ttcgccaggt atcctgcggg 4800 tgaagaagga ctacgagacc accctcgaac agctgacgct caaagccaaa gtgcacgtgt 4860 ccgaggagcc tcttttctgc ggatggagga tgagcccgtt cgggataatc aaggaaccaa 4920 acctcatact cgacagatgg aagatagcaa agagaagcgg gaatctgtct ttatgtcttg 4980 tgaactacgc gattgaggca agctttgggt acaggttaag tgagcacctg tatgacgtga 5040 atatagatgt tgatgctcag caagagcttg tgagggagat tgtggtgaaa aagcacctgc 5100 tgccaaagaa gatatctgat cttttcagtg aagacgagtg cgaagctcac agcgacggag 5160 acgatgattt cctgaataat gacgtcgcaa aattgtacag aattgaatga atttctaggg 5220 catggtagca gtagcaatag tctgagtgga gggtctttag agtctttgtc caatgcacag 5280 tgtcttcatc ttttgcgtga tctaagggac ttaggataca aaagtataga tagtatatta 5340 tatattctgg gtggtggcga ggcggaacga ttcgagatct ttcgaatctt ccggaggcac 5400 ggaatcggga tcggagaggc tttacagcta ggagtcagaa aaagcctgag ctacagtcca 5460 aggggcacag cggaaatact agacgattta ttgtctagga ttggaagagg aagcgcattc 5520 ctcccttgtg acctaggagc ggtgagaggg gagctaatag tgacattcca ttcggccaga 5580 ttaagtgtag acctctacat caataataag aaggttgtca cgaaatttgc tcaagcagaa 5640 ggggatgcaa actatgcggc aggaaggttc tctggttaca aaggcctcgt cctccgaacc 5700 gcgagacatt aaggtcttca acgtcaagag gaacaccagg gacctcgaga gtctcaacaa 5760 gagcctgcac aggggggatg tgtacgacac agagctcata gagaaggtct tccccagaag 5820 aacaaagaag tgcgtgatcc ataaggagct catagtcaag gatggtcgtg tggactgcga 5880 cctggatatc atggatgagg gcctggacga tatagacgaa gtggaattcc cactctacca 5940 cgtagggtgc atcgtggtgg cgctgatgcc acatggtaag aatctccagg gcaaggtggc 6000 tgttgaggtc ttagacacta ggctgaaaga cggagcggca aggatatcca gaaccctcat 6060 ggacatgtcg aaacctctga gtgcgtgcgc cgatttcccg ggctacttca taagcaccag 6120 tgacctactg aacgggtaca cactacacct ctcaataacc acaactgatc tgcagtttgt 6180 ggatggtgtg catccattta gtgtacagct gatgagcata ggacgtttct gtggtgaaga 6240 catgaagacc agatatgcta tcacagaggc ttctaagatg ttgcaccaaa acatactaaa 6300 tgcagagggt gacggtgagt tgatcccgag gggtgtgcaa gtccagaaag ttccggatac 6360 cctagttatg ccagaggtgt atgagacaat aaagaagctt ggattgagga caaatggcac 6420 actacgccaa gagggtggag ataagggcga taatagaaga gctggtgctg gcgaaagccc 6480 agccaactga agacgctaca gagagcggct acgaccgaaa tatgtacctg aatactctct 6540 tcgggtacat cgccttggtc ggcacaagca agaaggcggt ccattatgga gaggtagata 6600 tagtaggtcc taaagctagc aaaaagacag ggatcgaccc gaggggaaag ttggtcgtgt 6660 cagaactggt cggcagaatg cgcacgctga gcgtggcagt aagcgaggga cccgtcaaag 6720 gcgcaactct gaggcaaatg tgcgagccat tcgcacagaa cgcttatgat ttcctcgttc 6780 tgatggctga gatgggtacg tattcacagt tagcaactaa gatgactagg tcaggcttta 6840 aggagccaca ggttatgttc gactttgcgt cgggcttaga tctgaaagca ctgacattgc 6900 aagaagctac tgtgatacag gccatgcact cacgcctctt tcgtacagag ggcgcgaagg 6960 gagtattcaa cgctcagtca tcagttggtg agcaggctgt cgagatatag atggatgacc 7020 catcgtttct ctcgggtagg tccacgtttg ctaagcgtag gcgcgctagg cgcatgaatg 7080 tgtgtaagtg tggtgcgata atgcacaata ataaggactg taagtccagt agtatttcag 7140 gtcataaact cgacagacta cggttcgtta aagagggaag agtagctcta acaggcgaga 7200 ctcctgttta ccgaacttgg gtcaaatggg ttgagaccga atatcatata tatatattag 7260 aaacctcaga cgatgaggat taatcgtcta ccctagctaa ggagtaaagt ataacttaat 7320 aataaagcaa gctaggttgt cacacgaaga c 7351 //