Dbfetch
ID DQ855083; SV 2; linear; genomic RNA; STD; VRL; 7351 BP. XX AC DQ855083; XX DT 02-OCT-2006 (Rel. 89, Created) DT 05-MAR-2008 (Rel. 95, Last updated, Version 3) XX DE Grapevine virus A isolate KWVMo4-1, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7351 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7351 RA Goszczynski D.E.; RT ; RL Submitted (17-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX RN [3] RC Sequence update by submitter RP 1-7351 RA Goszczynski D.E.; RT ; RL Submitted (03-MAR-2008) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX DR MD5; d33c6fec5998101baaea212bc684a6c9. DR EuropePMC; PMC4661162; 26640751. XX CC On Mar 4, 2008 this sequence version replaced gi:111145944. XX FH Key Location/Qualifiers FH FT source 1..7351 FT /organism="Grapevine virus A" FT /host="grapevine cv. Merlot" FT /lab_host="Nicotiana benthamiana" FT /isolate="KWVMo4-1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /note="acronym: GVA" FT /db_xref="taxon:35288" FT CDS 87..5210 FT /codon_start=1 FT /product="194 kDa protein" FT /db_xref="GOA:Q06J01" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q06J01" FT /protein_id="ABH06992.2" FT /translation="MSISVSSQRVAASNLYTNGSEESVKAIKELKSKRLLDTETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYKVAPNYFSSNTLIVSCK FT ESKVKRLRLRNANSRNLNFEQYNRLVHAKDHHRYENAFRELDVGNLTNLINKEDKHQCI FT FIHDEVQYWSLDEMQRFLGSLNSVDRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRV FT IWYPDGKAEGAYTQPINPWLLRCSKTMDSKDRAWTITKLQTVGAHHLFSAIKGSYLTED FT SYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSS FT REENMDEALFVAQLAKQIKDTALYDKMGNPSLRSILSESFFDIAGNLFTRLFNRPEYDA FT RCLERFIRACDTTEIHIARRFMEGTRRGAPLKVQGVIDWVEDESANALSEVNFIEVSKD FT DREANPYGSSAMEAKNKRLLVPLSRILRAHSLIMDMQAPVEINVIRIVCSPKALAHFRC FT YLIRLGRFRFMESRALCDIEDLQAGLEEGLLTEEEVEARLLSSESESEVEESVVEPAPV FT PIDEKEEIKYSGVRKLCRENIYTDTLKGREAAFYSRYSKEYSYTGGSHRSLGWDKALDE FT LVAELGLDESYDHCLIQRYSKGGSIGFHADDESCYLPGGSVVTLNLHGEAIFEVKENAT FT GKIEQIKLKDGDVYTMGPGMQQSHKHRVVSCTEGRCSVTLRNKTTDYETRREGNNSEYE FT EDVAELDEGIEYLQKNSGNMCSLKAFADHMQLSIPSVISIVNGASPQTLREIESGGISV FT ATLVNLSKALDFPVAIHGERGYAETAGDYRKLHLKITAGHVEPLDGVNSKGGFKEALLL FT SDGIGIGRFRSDKSKADRLAQSFYNGNTGVLLGKYNKGKMHAEWLEEPKEVLTAFGFAG FT SGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSKISKKHKVVTFEVAFMDDYGCKDIV FT IDEIGLLPPGYIDLVIAVHRPRVLVLLGDPLQSTYHSKRDNVVLEASQEDIFSRVQGNL FT PYLCYSHRLPKNCKVFELECMGAECEKRVVYRSNRLKDEPVICATRAMKEEKGSGWCTV FT SETQGLSFKSCLIYLDEHWGKKEDEDVMVALTRSRGEIGIHVSPALKKTLISTAKSTLL FT KKVLKGETYRRSEIVAMVKKHIPEVTVMFEESRLAETVDYEARLAGDPYLKSLLSLYDE FT IEMDEIEMEEPVVLEPIKTHLALSEKLNELAPFDLKAKEHREQYTEAGRTEQIDEEGYK FT GENANPMTHKALYQRHTSDDTATFLMSVKKRLRFRNYEANRRKYKACHGIGQQMFSVFK FT EIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKW FT ARTWVEGMTGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCSLG FT DLAVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVCFAGDDMYSPGVLRVKRDYEGT FT LEQLTLKAKVHISDEPLFCGWRMSPFGIVKEPNLILDRWKMAKRNGDLSLCLVNYAIEA FT SFGYRLSEHLYDINIDVDAQQELVREIVEKKHLLPKKIADLFSDDECEAHSDGDEDFLR FT KDVAGLYRVG" FT CDS 5182..5712 FT /codon_start=1 FT /product="19 kDa protein" FT /db_xref="UniProtKB/TrEMBL:B1N164" FT /protein_id="ACA52188.1" FT /translation="MSQDCTELVEFLGQSSGSCNLNRGSLESLSYVECLRLLTDLKSLG FT YPSIDSILYILGGGSADRFEIFRIFRRRGIGIGGALQLGVRKSLCYSPRTVIEILDDLL FT GRLGRGSAFLPCDLGAVKGELLITFRPSRLSVDLYVNNKKVCTRLSQVVGDSGYVVRRF FT SGYPGIALRSTGN" FT CDS 5654..6490 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q06J02" FT /protein_id="ABH06991.2" FT /translation="MSSGDSQGTQGSRSDLQEIKIFNVKRNTKDLESLNKSLHRGDVYD FT TELIERVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVAL FT MPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTTDLLNGYT FT LHLSISTTDLQFVDGVHPFSVQLMNIGRFCGDDMKTRYAVSEASKILHQNILNSEGDGE FT EIPRGVHIQKVPDTLVMPEVYETIKKLGLKTNGSLCKESGNEGHHRGVGAGEGRSI" FT CDS 6414..7010 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF4" FT /db_xref="GOA:Q06J00" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q06J00" FT /protein_id="ABH06989.1" FT /translation="MAHYARRVEMRAIIEELVLAKAAPSEDATESGYDRTMYLNTLFGY FT IALVGTSKKAIHYGEVDIVGPKASRKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEL" FT CDS 7011..7283 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q06IZ9" FT /protein_id="ABH06990.1" FT /translation="MDDPSFLTGRSTYAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH FT KLDRPRFVKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDEE" FT 3'UTR 7284..7351 XX SQ Sequence 7351 BP; 2150 A; 1527 C; 2052 G; 1622 T; 0 other; gaatatttaa cttgattccc atcgattata agtgaacaaa cgttattagc acctgcgctc 60 tgcgaaatac ctgtgaattc acctagatgt cgatatcagt atcctcccaa cgtgtagcag 120 cctccaacct ctacactaac ggatctgagg agtcagttaa agctattaaa gagctgaaaa 180 gtaaacggtt attggatacc gaaacccggt tagatgggct atttgattac tacatccctg 240 ataccttgag agagatcctc tcaggttacg gtatggagtt cagtgttcat tctttccagg 300 ggcatgcaca cccagtaagc aaaatgatcg aaaatcacat gctctataaa gttgcaccaa 360 attatttttc tagtaacaca ttgatagtta gttgtaaaga aagtaaggta aagcgtctca 420 gactaagaaa tgcaaactct agaaatctaa acttcgagca atacaatcga ctggtacatg 480 caaaagacca tcacagatat gaaaatgcat tcagggaact cgacgttggt aatctgacaa 540 atttgattaa caaagaggat aagcaccaat gcattttcat acacgacgag gtccagtact 600 ggagtttaga cgagatgcaa cgctttctag gcagtttaaa ttctgtagat agagtagtgt 660 acagcataat ttacccagca gaggtcgaag cgggatactc acaaagcctc ttccccgagg 720 cctatacatt tgacctcaag gacggtaggg tgatttggta cccagacggc aaagctgaag 780 gcgcgtacac ccagccgatc aacccgtggc tcctcaggtg ctctaaaacg atggattcta 840 aggacagagc atggaccata acaaagttgc agacggtggg tgctcaccac ctcttcagcg 900 caatcaaagg aagttatctg acggaggatt cttataagta cgataacttc acggtgatca 960 atcccaatga tatcctaaga ggaaggaggg ggagcaaacc gttgtatctc agagccagaa 1020 tgatcaagcc gacgttgcta taccttctag cactcaagaa gagcgactca aattccgcgg 1080 tagccaaatt gagaatgcta agcagcagag aggagaacat ggacgaggct ctcttcgtgg 1140 cccagctcgc caagcagatc aaggacacag ccctctatga caagatggga aacccgagct 1200 tgcggagcat tctgtccgag tccttctttg atatagctgg caatctcttc acccgcttgt 1260 ttaacagacc tgaatatgat gcgagatgct tggagagatt tatcagggct tgtgacacca 1320 ctgaaatcca catcgcccgg aggttcatgg agggaacgag gcgaggtgcg ccactcaagg 1380 tacagggggt aattgattgg gtggaagatg aaagcgctaa cgctttgagc gaggtgaact 1440 tcatcgaagt aagcaaagat gaccgcgaag ccaatccata cggttcatct gccatggagg 1500 ccaagaataa aagactacta gtgccactat ccagaatcct ccgagcgcat agcctaataa 1560 tggacatgca agcacccgtc gagatcaatg tgatacgcat cgtgtgctca cccaaggctc 1620 tcgctcactt ccgctgttac ctcattcgac tcgggaggtt cagattcatg gagagccgag 1680 ccctgtgcga catcgaggac cttcaggctg gcctagagga agggttactc acagaggagg 1740 aagtggaggc aagattgctg tcatcagaga gcgagagtga ggtggaagaa agcgtggtcg 1800 aaccagctcc agtgccgatt gatgagaaag aggagataaa gtactccggg gtgcgcaaac 1860 tctgcaggga gaacatctac actgatactc tcaaaggaag agaggctgca ttctacagca 1920 gatacagtaa agagtacagc tacaccgggg gttcacatcg atctctgggc tgggacaagg 1980 cgttggacga attggtagcg gagcttgggt tggacgaaag ttacgatcac tgcttgatcc 2040 agagatattc caaaggaggg agtatcggtt tccacgccga tgatgaaagc tgttacctgc 2100 cagggggttc agtggtaacc ttgaacctac acggcgaggc gatcttcgag gtcaaagaaa 2160 atgccacggg aaagatcgaa cagatcaaac tgaaagacgg agatgtgtac acaatggggc 2220 cagggatgca gcagtctcac aagcataggg tagtatcttg cactgagggg cgttgcagtg 2280 taactctgag gaacaagacc acagattatg agaccagacg ggaaggaaat aactcagagt 2340 atgaagagga tgtggctgag ttagatgaag gcattgagta cctgcagaag aactccggta 2400 acatgtgctc gcttaaagct ttcgcggacc acatgcagct aagcatccca agtgtgatat 2460 caatagtgaa tggagcctcc cctcagacac tcagagaaat agaaagcggg ggtatcagcg 2520 tggctacact tgtgaacctc tccaaagctc tggacttccc ggtggcaatt cacggagaga 2580 gaggctacgc cgaaacagcg ggtgactaca gaaagctgca cctcaaaata acggccgggc 2640 atgtggaacc actcgatggt gtgaatagca aaggaggttt caaagaggca ctgctcttaa 2700 gtgacgggat tggaatcggg aggttcaggt ctgataaaag caaggctgac agactagcgc 2760 agagcttcta caatgggaac acgggcgtgc tactagggaa gtacaacaag ggcaagatgc 2820 acgctgaatg gttggaggaa ccaaaagagg tgctcacggc ctttggattc gccggctcag 2880 ggaaaagtca ctggtgtcaa accatactta aacactgtgc cgttgagaag gtgctagtaa 2940 taagccctag aaaagtcctc aaggatgact ggacgagcaa gatctcgaag aaacacaaag 3000 tggtgacatt cgaggtggcc ttcatggatg attatggctg caaggatata gtcatagacg 3060 aaattgggct cctgccgccc gggtacatag atctggtcat tgcagtgcac aggccaagag 3120 tcctagttct gctaggggat cctttacaaa gcacgtacca cagtaaaagg gacaatgtgg 3180 tattggaggc aagccaggag gacatcttct cgagggtaca agggaatcta ccatacttgt 3240 gctattcaca cagactgcca aagaattgca aagtgtttga actcgaatgc atgggcgcag 3300 agtgtgagaa aagggtagtc taccgttcca atcgcctgaa ggatgagccg gtgatctgtg 3360 ctaccagggc aatgaaagag gagaaaggtt cagggtggtg caccgtcagc gaaacccaag 3420 ggttgagctt caagtcctgt ctcatctatc tggatgaaca ttgggggaaa aaggaggacg 3480 aggacgtcat ggtcgctctg accaggtcaa gaggggaaat aggcatccat gtgagccctg 3540 cattgaaaaa gaccctaata tccacagcca agagtacact tttgaagaag gtactcaaag 3600 gggaaaccta tcggaggtct gagatcgttg caatggttaa aaaacacatc cccgaggtca 3660 cggtgatgtt tgaagaaagc aggttggccg aaaccgtaga ctatgaagcc agacttgccg 3720 gtgatccata tctgaagtcg ctactttctt tgtacgacga aattgaaatg gatgaaatcg 3780 agatggaaga accggtagta ctcgagccaa taaagactca cctcgccctc agcgagaaat 3840 tgaatgaatt ggccccgttt gacctcaagg ccaaagaaca cagagagcag tacacggagg 3900 cggggcgcac tgagcagatc gatgaggagg gatacaaagg ggaaaatgcc aacccaatga 3960 cccacaaggc tctgtaccag aggcacacat ctgatgacac ggccacattc ctgatgtctg 4020 tgaaaaagag attgagattc agaaactatg aggccaacag gaggaaatac aaagcatgcc 4080 atgggatagg ccagcagatg ttctccgtct tcaaggagat ctaccagctg aaagagatcg 4140 attcgcttcc tgaactggag aggtgcgaaa tggagttcat gaagaagaga gtggaaaaga 4200 gcgcgggtct aatagaacag catgctggta ggagtgaccc cgactggccc agcaactatc 4260 tgaagatttt cctcaagcaa cagacatgta caaagatgga aaagagaggg gtggatgcaa 4320 aagcagggca gacaatagca tgctttgcgc actcagtgct gtgcaggttc ggtcccattc 4380 tgagacaaac agagagagct ctaagggagt tattgccaga gaacgtcatg atttactctc 4440 aaaagaatta catggacctg gataagtggg caagaacttg ggttgaaggc atgacgggca 4500 ccgattccga ttatgaagcg ttcgatcgat cacaggatga gaaggtgtta gatctggagg 4560 tggaggtgct acgtttcttc ctctggccag aggatttgat aagagagtat gaggaactca 4620 agctcatgat gggatgttct ttgggggatc tagcggtaat gcgcttctct ggggaattcg 4680 gtacattctt cttcaatact gtatgcaaca tggtcttcac ctgcatgcgc taccatatag 4740 accgcaatac acctgtgtgc ttcgctggag atgacatgta ctctcccggg gtactgaggg 4800 tcaagcggga ttacgaggga accctagagc agctgactct aaaggcgaag gtgcacatat 4860 ccgatgaacc actcttctgt gggtggcgaa tgagcccatt tggaatagta aaggagccga 4920 atctgatcct ggacagatgg aagatggcaa agaggaatgg ggatctatcg ctatgtctgg 4980 tgaattacgc gatagaagca agcttcgggt acaggttaag cgagcacctg tacgatatca 5040 atattgatgt agatgcacag caggaactgg taagagaaat cgtggagaaa aagcatctgc 5100 tcccaaagaa aatcgccgat ctcttcagcg atgatgagtg cgaggcccac agcgacgggg 5160 acgaggattt cttgagaaag gatgtcgcag gattgtacag agttggttga attcctaggt 5220 cagagtagcg gtagttgtaa tttgaataga gggtctttag agtctttgtc ctacgtagag 5280 tgtctgcgtt tgttaaccga tttgaagagt ttagggtatc ctagtataga tagcattctt 5340 tatattctgg gtggtggtag tgcggataga tttgaaatct ttcgaatctt ccggaggcgc 5400 ggaatcggga ttggaggggc tttacagcta ggcgtcagaa agagtttgtg ctacagccca 5460 aggacggtga tcgagatact ggacgatcta ctgggcaggt taggcagagg aagtgcgttc 5520 ttgccgtgtg atctaggggc agtcaagggg gagttactga taactttccg gccatctagg 5580 ttaagcgtag atctatacgt caataacaag aaggtgtgca caaggttgag tcaggtggtg 5640 ggtgacagcg gctatgtcgt caggagattc tcagggtacc cagggatcgc gctcagatct 5700 acaggaaatt aagatcttca atgtcaagag gaacacaaag gacctcgaga gtctgaacaa 5760 gagcctgcac aggggggatg tctatgatac agaactcata gagagggtgt tcccgcgaag 5820 gaccaagaag tgcgttgtgc acagagaact catcgtcaaa gacggtcgcg tggattgtga 5880 cttggacctg atggactccg gtctagacga cgtagatgag gatgagttcc ctttgtacca 5940 cgttggctgc atagtcgtcg cgttgatgcc acatggcaag aatctgcaag ggaaggtggc 6000 ggttgaagtg gtggacactc gtctgaagag tggagcggcc cgaatctcaa gaagtctcat 6060 ggacttatcc aaaccgctaa gcgcttgcgc ggatttccct ggatacttca tcagtactac 6120 agacttgctc aatggataca cgttgcatct ttccatcagc acgacagatc tgcaatttgt 6180 tgatggtgtg catccattca gcgtgcaact gatgaatatc ggcaggttct gtggggatga 6240 catgaaaact aggtatgcgg tctccgaggc atccaaaatc ttgcatcaga acattctgaa 6300 ttctgaaggg gatggtgaag agatcccgcg aggtgtgcac atccagaaag taccagatac 6360 cctagttatg ccagaagttt acgagacaat aaagaaactg gggctgaaga caaatggctc 6420 actatgcaag gagagtggaa atgagggcca tcatagagga gttggtgctg gcgaaggccg 6480 ctccatctga agacgctact gagagcggct acgaccgaac aatgtacctg aatactctct 6540 tcgggtacat cgccttggtc gggacaagca agaaggcgat ccactatgga gaggtagata 6600 tagtaggacc taaagctagc aggaaaacgg ggatagaccc tcgtgggaaa ctggttgtgt 6660 ctgaattggt gggaaggatg aggacgttga gtgtagccgt cagcgaggga ccggtgaaag 6720 gggcaaccct caggcagatg tgcgagcctt tcgcgcaaaa cgcctatgat ttcctcgtgt 6780 tgatggctga gatgggaaca tactcacagt tagcgactaa gatgactagg tcaggcttta 6840 aggagccaca ggttatgttc gatttcgcat cgggcttaga tctgaaagca ctgacattgc 6900 aagaagctac tgtgatacag gctatgcact ctcgtctctt tcggactgaa ggtgcaaaag 6960 gagtgttcaa cgcccaggct tcggtcggtg aacaggctgt cgaactatag atggatgacc 7020 catcgtttct cacgggtagg tccacgtatg ctaagcgtag gcgcgctagg cgcatgaatg 7080 tgtgtaagtg tggtgctata atgcacaata ataaggattg caaatccagt agtatctctg 7140 gtcataaact cgatagaccg cggttcgtga aagagggaag agtagcccta acgggcgaga 7200 ctcctgttta ccgaacttgg gtcaagtggg tggagacaga gtatcatata tatatattag 7260 aaacctcaga cgatgaggaa tgatcgtcta tcctagctaa agagtaaata ataacttaat 7320 aataaagcaa gctaggttgt catactatga c 7351 //