ID DQ855082; SV 2; linear; genomic RNA; STD; VRL; 7471 BP. XX AC DQ855082; XX DT 02-OCT-2006 (Rel. 89, Created) DT 05-MAR-2008 (Rel. 95, Last updated, Version 3) XX DE Grapevine virus A isolate P163-M5, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7471 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7471 RA Goszczynski D.E.; RT ; RL Submitted (17-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX RN [3] RC Sequence update by submitter RP 1-7471 RA Goszczynski D.E.; RT ; RL Submitted (03-MAR-2008) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX DR MD5; 44a1564cb7184914f45f281f6fa5720d. DR EuropePMC; PMC4661162; 26640751. XX CC On Mar 4, 2008 this sequence version replaced gi:111145939. XX FH Key Location/Qualifiers FH FT source 1..7471 FT /organism="Grapevine virus A" FT /host="grapevine cv. Cinsaut Blanc" FT /lab_host="Nicotiana benthamiana" FT /isolate="P163-M5" FT /mol_type="genomic RNA" FT /country="South Africa" FT /note="acronym: GVA" FT /db_xref="taxon:35288" FT CDS 88..5211 FT /codon_start=1 FT /product="194 kDa protein" FT /db_xref="GOA:Q06J05" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q06J05" FT /protein_id="ABH06988.2" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLDTETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRVAPNYFSSNTLVVSCK FT ESKVKRLRLRNANSRNLNFEQYNRLVHAKDHHRYENAFRELDVGNLTSLINKEDKHQCI FT FIHDEVQYWSLDEMQRFLGSLNSVDRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKDGRV FT IWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIRGSYLTED FT SYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSS FT REENMDEALFVAQLAKQIKETALYDKMGNPSLRSILSESFFDIAGNLFTRLFNRPEYDA FT RCLERFIRACDTTEIHIARRFMEGTRRGAPLKVQDVIDWVEDESANVLSEVNLIEVSKD FT DREASPYGSSAMDARNKRLLVPLPRILRAQSLIMDMQAAVEINVIRIVCSPKALIHFRC FT YLIKLGRFRFMESKALCDIEDLQAGLEEGLLTEDEVEARLLSSESEGEVEECVVKPAPV FT PIDEKEEIKYSGVRKLCKESIYTDTLKGGEAAFYSGYSKEYSYTGGSHRSLGWDKALDE FT LVAELGLDESYDHCLIQRYSKGGSIGFHADDERCYLPGGSVVTLNLHGEAIFEVKENAT FT GKIQQIKMRDGDVYTMGPGMQQTHKHRVVSCTEGRCSVTLRNKTTDYETRLEGNNSEYE FT EDVAELDEGIEYLQKNSGNMCSLKAFADHMQLSIPSVISIVNGASPQTLREIESGGISV FT ATLVNLSKALDFPVAIHSERGYAETVGDYRKLHLKITAGHVEPFDGVNSKGGFKEALLL FT SDGIGIGRFRVDKNKADRLARSFYNGNTGVLLGKYNKGKMHAEWLEEPKEVLTAFGFAG FT SGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSKISKKHKVVTFEVAFMDDYGCKDIV FT IDEIGLLPPGYIDLVIAVHRPRVLVLLGDPLQSTYHSKRDNVVLEASQEDIFSRVQGNL FT PYLCYSHRLPKNCKVFELECMGAECDKRVVYRSNRLKDEPVICATRAMKEEKGSGWYTV FT SETQGLSFKSCLIYLDEHWGKKEDEDVMVALTRSRGEIGIHVSPALKKTLMSSAKSTLL FT KKVLKGETYRRSEIVAMTKKHIPEVVVMFEESRLAETVDYEARLAGDPYLKSLLSLYDE FT IEMDEVEMEEPVALEPIKTHLALSEKLNELAPFDLKAKEYREQYTEAGRTEQIDEEGYK FT GENANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNFEANRRKYRACHGIGQQMFSVFK FT EIYQLKEIDSLPELERCEMEFMKKRVEKSAGLIEQHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIACFAHSVLCRFGPILRQTERALRELLPENVMIYSQKNYMDLDKW FT ARTWVEGMTGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCSLG FT DLAVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVCFAGDDMYSPGILRVKRDYEGT FT LEQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKMAKRNGDLSLCLVNYAIEA FT SFGYRLSEHLYDINIDVDAQQELVREIVEKKHLLPKKIADLFSDDECEAHSDGDEDFLS FT KDVAGLYRVS" FT CDS 5302..5832 FT /codon_start=1 FT /product="19 kDa protein" FT /db_xref="UniProtKB/TrEMBL:B1N163" FT /protein_id="ACA52187.1" FT /translation="MSQDCTELVEFLGQSRGSCNLNRGSLESLSYVECLRLLTDLKGLG FT YPSIDSILYILGGGSADRFEIFRIFRRHGIGIGEALQLGVRKSLCYSPRTVIEILDDLL FT GRLGRGSAFLPCDLGAVKGELLITFRPSRLSVDLYVNNKKVCTRVSQVVGDSSYVLSRF FT SGYPGIALRSTGN" FT CDS 5774..6610 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q06J06" FT /protein_id="ABH06987.2" FT /translation="MSSVDSQGTQGSRSDLQEIKVFNVKRHTKDLESLNKSLHRGDVYD FT TELIEKVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVAL FT MPHGKNLQGKVAVEVVDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTTDLLNGYT FT LHLSISTTDLQFVDGVHPFSVQLMNIGRFCGDDMKTRYAVSEASKILHQNILNSERDGE FT EIPRGVHIQKVPDTLVMPEVYETIKKLGLKTNGSLRKESGNEGHNRGVGAGEGHPI" FT CDS 6534..7130 FT /codon_start=1 FT /product="capsid protein" FT /note="ORF4" FT /db_xref="GOA:Q06J04" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q06J04" FT /protein_id="ABH06985.1" FT /translation="MAHYAKRVEMRAIIEELVLAKATPSDDATESGYDRIMYLNTLFGY FT IALVGTSKKAIHYGEVDIVGPKASKKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEI" FT CDS 7131..7403 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q06J03" FT /protein_id="ABH06986.1" FT /translation="MDDPSFLTGRSTYAKRRRARRMNVCKCGAIMHNNKDCRSSSISGH FT KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDEE" FT 3'UTR 7404..7471 XX SQ Sequence 7471 BP; 2181 A; 1530 C; 2079 G; 1681 T; 0 other; cgaatattta acttgattcc catcgactat aagtgaacaa acgttattag cacctgcgct 60 ctgcaaaata cctgtgaatt cacctagatg tcgatatcag tatcctccca acgtgtagca 120 gtttccaacc tctacactaa cggatctgaa gaatcagtta aagcgataaa agagctgaaa 180 agtaaacggt tgttggatac cgaaacccgg ttagatgggc tatttgatta ctacatccct 240 gacaccttga gagaaatcct ctcaggttac ggtatggagt tcagtgttca ttctttccag 300 gggcatgcac acccagtaag caaaatgata gagaatcaca tgctctatag agttgcacca 360 aattattttt ctagtaatac attggtagtt agttgtaaag aaagtaaggt aaagcgtctt 420 aggctaagaa atgcaaactc aagaaatcta aacttcgagc aatacaaccg attggtacat 480 gcgaaagacc atcatagata tgaaaatgca ttcagggaac ttgacgtcgg taatctgacg 540 agtttgatta acaaagagga taagcaccaa tgcattttta tacatgacga ggtacagtat 600 tggagtttag acgagatgca acgcttttta ggtagtttaa attcagtaga tagagtagtg 660 tacagtataa tttacccagc ggaggtcgaa gcggggtatt cacaaagcct cttccccgag 720 gcctacacat tcgacctaaa ggacggtagg gtgatctggt atccagacgg caaagctgaa 780 ggcgcatata cccaaccgat caatccatgg ctcctcaggt gctctaaaac gatcgattct 840 aaggatagag catggaccat aaccaagttg cagacggtgg gtgcccacca cctcttcagc 900 gcaatcagag ggagttatct gacggaggac tcttacaagt acgataattt cacggtgatc 960 aaccccaatg atatcctaag gggaaggagg gggagcaaac cgttgtacct cagagccagg 1020 atgatcaagc cgacattgct atatcttcta gcgctcaaga agagtgactc gaactccgca 1080 gtggccaaac tgagaatgct aagcagcaga gaggagaata tggatgaggc tctctttgtg 1140 gcccagctcg ccaagcagat caaggagacg gctctctatg acaagatggg aaacccaagc 1200 ttgcggagca tcctgtccga gtccttcttt gatatagctg ggaacctctt cactcgcttg 1260 tttaacagac cagaatatga tgcgagatgc ttagagaggt ttatcagggc ctgtgatacc 1320 actgaaatcc acatcgcccg aaggttcatg gagggaacga ggcgaggtgc gccactcaaa 1380 gtgcaggatg taattgattg ggtggaggat gaaagcgcca acgttttgag tgaggtgaac 1440 ttaatcgaag tgagcaaaga tgaccgcgaa gcaagtccat acggctcatc tgcaatggac 1500 gccaggaata aaagactgct ggtaccacta cccagaatcc tcagagcgca gagtctgata 1560 atggatatgc aagcagcggt agagatcaat gtgatacgta tcgtgtgctc accgaaggcc 1620 ctcatccatt tccgctgtta cctcattaaa ctcggaagat tcagattcat ggagagtaaa 1680 gccctgtgcg atattgagga tcttcaggct ggtctagagg aaggtttact cactgaggac 1740 gaggtggagg caagattgct atcatcagag agtgagggag aggtagaaga atgcgtggtc 1800 aaaccagctc cagtgccaat tgatgagaag gaggagatca agtactcagg tgtgcgcaaa 1860 ctctgcaagg aaagcatcta tactgatacc ctcaaaggag gagaagctgc attctacagc 1920 ggatacagta aagagtacag ctacaccggg ggctcacacc gatctctggg ctgggacaag 1980 gcattggacg aactggtcgc agaacttgga ttggatgaaa gctacgatca ctgcttaatc 2040 cagagatatt ctaaaggggg aagcatcggt ttccatgctg atgacgaacg ctgttatctg 2100 ccagggggtt cagtggtgac cttgaaccta cacggcgagg cgatttttga ggtcaaagaa 2160 aacgccacgg gtaaaattca gcagataaag atgagagacg gggatgtgta cacgatgggg 2220 ccagggatgc agcagactca caaacatagg gtggtatctt gcactgaagg tcgttgcagt 2280 gtgaccttga gaaacaaaac cactgattat gagaccaggc tggagggaaa taactcagag 2340 tatgaagagg atgtagctga gttagatgag ggtattgagt acctgcagaa gaactctggc 2400 aacatgtgct cactcaaagc cttcgcggat cacatgcagc taagtattcc aagcgtgata 2460 tcaatagtga atggagcttc ccctcagacg ctcagagaaa tagaaagcgg gggcatcagc 2520 gtggccacac ttgtgaacct ctccaaagcg ctagatttcc cggtggcaat ccacagtgag 2580 agaggttacg ccgaaacagt gggtgattac aggaagctgc accttaaaat aacggccggg 2640 catgtggagc cattcgatgg cgtgaacagc aaaggaggct ttaaagaggc actgctctta 2700 agcgacggaa tcggaatcgg cagattcagg gtggataaaa ataaggctga cagactggcg 2760 cggagcttct acaatgggaa cacaggcgtg ctactaggga agtacaacaa gggtaagatg 2820 catgctgaat ggttggagga accgaaagag gtgctcacag ccttcggatt cgccggctca 2880 gggaaaagtc actggtgtca aaccatactc aaacactgtg ccgtggagaa ggtactagtt 2940 ataagcccta gaaaagtcct caaagatgac tggacaagca aaatctcaaa gaagcacaaa 3000 gtggtgactt tcgaggtggc cttcatggat gattatggct gcaaggatat agttatagat 3060 gagattggac tcctgccacc cgggtacata gatctggtca ttgcagtgca caggccaaga 3120 gtcctagttc tgctagggga ccctctacag agcacatacc acagcaaaag ggacaatgtg 3180 gtgctggagg caagccagga ggatatcttc tctagggtcc aagggaatct accgtacttg 3240 tgctattcac atagactgcc aaagaactgc aaagtgttcg agctcgagtg catgggcgca 3300 gagtgtgaca aaagggtagt ctatcgttcg aaccgcttga aggatgagcc tgtgatctgt 3360 gctaccagag caatgaaaga ggagaagggg tcggggtggt ataccgtaag cgagacccag 3420 gggttgagct tcaagtcatg tctcatctat ctagatgaac actggggaaa gaaggaggac 3480 gaggatgtca tggtcgctct aaccaggtca agaggggaaa taggcattca tgtgagccct 3540 gcattgaaaa agaccctaat gtcctctgcc aagagcacac tcttgaaaaa ggtactcaaa 3600 ggagaaacct atcgaagatc cgagattgtt gcaatgacca aaaagcacat ccccgaggtt 3660 gtagtgatgt tcgaagaaag caggttagcc gaaactgtgg attatgaggc caggctcgcc 3720 ggtgacccat atctgaagtc gttactttct ctgtacgatg aaattgagat ggacgaggtt 3780 gagatggaag aaccagttgc actcgagcca ataaagaccc accttgctct cagcgagaaa 3840 ttgaatgagt tggctccatt cgacctcaag gccaaagaat accgggagca gtacacagag 3900 gcgggacgca ctgagcaaat cgatgaagaa gggtacaaag gggagaatgc caatccgatg 3960 acccacaagg ctctttacct gaggcacaca tcagacgaca cagccacatt catgatgtct 4020 gtgaaaaaga gattgagatt cagaaacttt gaggccaaca gaaggaagta cagagcatgc 4080 cacggtatag gccagcaaat gttctccgtc ttcaaggaga tctatcagct aaaagagatc 4140 gactcgcttc ctgaactgga gaggtgcgaa atggaattca tgaagaagcg agtggaaaag 4200 agtgcgggcc tcatagaaca gcatgctggt aggagtgacc ccgattggcc cagcaactat 4260 ctgaagatct tcctcaagca acagacatgc acaaagatgg aaaagagagg ggtggatgca 4320 aaggcgggac agacgatagc gtgcttcgca cattcggtac tgtgcaggtt cggccccatc 4380 ctgaggcaaa cagaaagagc cctaagggag ttactgccag aaaatgtcat gatctactct 4440 cagaagaatt acatggacct ggacaaatgg gcaagaacat gggttgaagg tatgacgggc 4500 actgattccg actacgaagc attcgatcga tcacaagatg agaaggtgtt agatctggaa 4560 gtggaggtgc tacgtttctt cctctggcct gaggacttga taagagagta cgaggagctc 4620 aagctgatga tgggatgttc tctgggggac ctagcagtga tgcgcttctc tggcgaattt 4680 ggcactttct tcttcaacac tgtgtgcaac atggtcttca cctgcatgcg ctaccatata 4740 gaccgcaaca caccggtgtg cttcgctgga gacgacatgt actctcccgg gatactgagg 4800 gtcaagcggg actacgaggg gaccctagag cagttgactc taaaagcgaa ggtgcacata 4860 tcggaggaac cactcttctg cggatggcga atgagcccgt ttggaatagt aaaagagcca 4920 aatctgatcc tggacagatg gaagatggca aagaggaacg gggatctatc gctgtgtctg 4980 gtgaattatg cgatagaagc aagcttcggg tacaggttaa gcgagcacct gtacgatatc 5040 aatattgatg ttgatgcaca gcaagaattg gtgagagaaa tcgtggagaa gaagcattta 5100 ctcccaaaga aaatcgccga tctcttcagc gatgacgaat gcgaggctca cagcgacggt 5160 gatgaagact tcttgagcaa ggatgtcgca ggattgtaca gggttagttg aactcttagg 5220 tcaagggagc ggtagttgta atttgaatag agagtcttta gagtctttat cctacgtaga 5280 gtgtctacgt ttgctaactg gatgtcgcag gattgtacag agttagttga attcctaggt 5340 cagagtcgcg gtagttgtaa tttgaataga gggtctttag agtccttgtc ctacgttgag 5400 tgtctgcgtc tgttaactga tttgaagggt ttagggtatc ctagtataga tagcattctt 5460 tatattctgg gtggtggtag tgcggacaga tttgaaatct ttcgaatctt ccggaggcac 5520 ggtatcggga tcggagaggc tttacagcta ggcgtcagaa aaagtttgtg ctacagccca 5580 aggacggtga tcgagatact ggacgatcta ctgggcaggt taggcagggg gagtgcgttc 5640 ttgccgtgtg atctaggggc agtcaagggg gagttactga taactttccg tccatctagg 5700 ttaagcgtag atctatacgt caataacaag aaggtgtgca caagggtgag tcaggtggtg 5760 ggtgacagca gttatgtcct cagtagattc tcagggtacc cagggatcgc gctcagatct 5820 acaggaaatt aaggtcttca atgtcaagag gcatacaaag gatttggaga gtctgaacaa 5880 gagcctgcac aggggggatg tttacgacac agaactcata gagaaggtgt tccctcgaag 5940 gaccaagaag tgcgttgtgc acagagaact catcgtcaag gacggtcgcg tggattgtga 6000 cctggatcta atggactccg gtctagacga cgttgatgag gatgagttcc ctttgtacca 6060 cgttggctgc atagtcgtag cgttaatgcc acatggcaag aatctgcaag ggaaggtggc 6120 ggttgaagtg gtggacactc gtctgaagag tggagcggcc cggatctcaa gaagtctcat 6180 ggacttatcc aaacctctga gtgcttgcgc agatttccct ggatacttca tcagcactac 6240 agacttgctc aatgggtaca cgttgcatct ttccattagc acaacagacc tgcagtttgt 6300 tgatggtgtg catccattca gcgtgcaact gatgaatatc ggcaggttct gtggggatga 6360 catgaaaacg aggtatgcgg tctcagaggc atccaaaatc ttgcatcaga acatcctgaa 6420 ttctgagagg gacggcgagg agatcccgcg tggtgtgcat atccagaaag taccagatac 6480 cctagttatg ccagaagttt atgagacaat aaagaagctg ggactgaaga caaatggctc 6540 actacgcaaa gagagtggaa atgagggcca taatagagga gttggtgctg gcgaaggcca 6600 ccccatctga tgacgctact gagagcggct acgaccgaat aatgtacctg aacactctct 6660 tcgggtacat cgccttggtc gggacaagca agaaggcgat ccactatgga gaggtagata 6720 tagtaggacc taaagctagc aagaaaacgg ggatagaccc tcgtgggaaa ctggttgtgt 6780 ctgaattggt gggaaggatg aggacattga gtgtggccgt cagcgaggga ccggtgaaag 6840 gggcaaccct caggcagatg tgcgaacctt tcgcgcaaaa cgcctacgat ttcctcgtgt 6900 tgatggctga gatgggaacg tactcacagt tagcgaccaa aatgaccagg tcaggcttta 6960 aggagccaca ggttatgttc gatttcgcat cgggcttaga tctgaaagca ctgacattgc 7020 aagaagctac tgtgatacag gctatgcact ctcgtctctt tcggactgaa ggtgcaaaag 7080 gagtgttcaa cgcccaggct tcggtcggtg aacaggctgt cgaaatatag atggatgacc 7140 catcgtttct cacgggtagg tccacgtatg ctaagcgtag gcgcgctagg cgcatgaatg 7200 tgtgtaagtg tggtgctata atgcacaata ataaggattg cagatccagt agtatctctg 7260 gtcataaact cgatagactg cggttcgtga aagagggaag agtagcccta acgggcgaga 7320 ctcctgttta ccgaacttgg gtcaagtggg tggagacaga gtatcatata tatatattag 7380 aaacctcaga cgacgaggaa tgatcgtcta tcctagctaa ggagtgaata ataatttaat 7440 aataaagcaa gctaggttgt catactatga c 7471 //