ID DQ855081; SV 2; linear; genomic RNA; STD; VRL; 7352 BP. XX AC DQ855081; XX DT 02-OCT-2006 (Rel. 89, Created) DT 05-MAR-2008 (Rel. 95, Last updated, Version 2) XX DE Grapevine virus A isolate GTR1SD-1, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7352 RA Goszczynski D.E.; RT "Molecular variants of GVA associated with Shiraz disease in South Africa"; RL Unpublished. XX RN [2] RP 1-7352 RA Goszczynski D.E.; RT ; RL Submitted (17-JUL-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX RN [3] RC Sequence update by submitter RP 1-7352 RA Goszczynski D.E.; RT ; RL Submitted (03-MAR-2008) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX DR MD5; 66438ec18566a884c29cc0dc9008e1b7. DR EuropePMC; PMC4661162; 26640751. XX CC On Mar 4, 2008 this sequence version replaced gi:111145934. XX FH Key Location/Qualifiers FH FT source 1..7352 FT /organism="Grapevine virus A" FT /host="grapevine cv. Shiraz" FT /lab_host="Nicotiana benthamiana" FT /isolate="GTR1SD-1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /note="acronym: GVA" FT /db_xref="taxon:35288" FT CDS 88..5211 FT /codon_start=1 FT /product="194 kDa protein" FT /db_xref="GOA:Q06J09" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q06J09" FT /protein_id="ABH06983.2" FT /translation="MSISVSSQRVAVSNLYTNGSEESVKAIKELKSKRLLETETRLDGL FT FDYYIPDTLREILSGYGMEFSVHSFQGHAHPVSKMIENHMLYRIAPNYFSSNTLVVSCK FT ESKVKRLRLRNANSRNLNIEQYNRLVHAKDHHRYENAFRELDVGNLTNLINKEDHHQCI FT FIHDEVQYWSLDEMQRFLGSLNSVNRVVYSIIYPAEVEAGYSQSLFPEAYTFDLKEGRV FT IWYPDGKAEGAYTQPINPWLLRCSKTIDSKDRAWTITKLQTVGAHHLFSAIRGSYLTED FT SYKYDNFTVINPNDILRGRRGSKPLYLRARMIKPTLLYLLALKKSDSNSAVAKLRMLSS FT REENMDEALFVAQLAKQIKDTALYDKMGNPSLRSILSESFFDIAGNLFTRLFNKPEYDA FT RCLEKFIRACDTTEFHIARRFMEGTRRGAPFKVQDVADWIEDEGAGILSEVNFVEVSKD FT DREPSPYGTSAMNSKSKRLQVPLTRILRAQNLIMEMQAPVEINQVRVVCSFRALVYLRC FT YLIRLGRFRFMESRAICDIENLQSGLEEGLLTEEEVEARLLSSESEGECEESIVKMAPE FT RVEEREEVKYSGVRKLCQESIYTDTLKGREVAFYSRHSKEYSYTSGSHRSLGWDKALDE FT LIVELGLDESYDHCLIQRYSKGGSIGFHADDERCYLPGGSVVTLNLHGEAIFEVKENAT FT GKVQKIKLGDGDVYTMGPGMQQTHKHRVESCTEGRCSVTLRNKTTDYETRQEGNNSEYE FT EDVAELDEGIEYLKKNSGNMCSLKAFADHMQLSIPSVISIVNGASPQTLREIESGGISV FT ATLVNLSKALDFPVAIHGERGYAETMGDYRKLHLKITAGHVEPFEGVNSRGGFKEALLL FT SDGIGIGRFRVDKSKADRLAQSFHNGNTGVLLGKYNKGKIHAEWLDEPKEVLTAFGFAG FT SGKSHWCQTILKHCAVEKVLVISPRKVLKDDWTSKISKKHKVVTFEVAFMDDYGCKDIV FT IDEIGLLPPGYIDLVIAVHRPRVLVLLGDPLQSTYHSKRDNVVLEASQEDVFSRVQGNL FT PYLCYSHRLPKNCTLFELECMGAECDKRIVHRSNRLKDEPVICATRAMKEEKGSGWYTV FT SETQGLSFKSCLIYLDEHWGKKEDEDVMVALTRSRGEIGIHASPALKKSLISTAKSTLL FT RKVLKGETYRRSEIVAMVKKHIPEVTVMFEESRLAENVDYEARLAGDPYLKSLLSLYDE FT IEMEEVEIEEPTALEPVKTHLALSEKLNELAPFDLKAKEDREQYTEAGRTEQIDEEGYK FT GEDANPMTHKALYLRHTSDDTATFMMSVKKRLRFRNFEANRRKYKACHGIGQQMFSVFK FT EIYQLKEIDSLPELERCEMEFMKKRVEKSAVLIEQHAGRSDPDWPSNYLKIFLKQQTCT FT KMEKRGVDAKAGQTIACFAHSVLCKFGPTLRQTEKALRELLPENVMIYSQKNYMDLDKW FT ARTWVESMTGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPEDLIREYEELKLMMGCSLG FT DLAVMRFSGEFGTFFFNTVCNMVFTCMRYHIDRNTPVCFAGDDMYSPGILRVKKDYEGT FT LEQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKMAKRNGDLSLCMVNYAIEA FT SFGYRLSEHLYDINIDVDAQQELVREIVERKHLLPKKIANLFSDDECEAHSDGDEDFLS FT KDVAGLYRVS" FT CDS 5183..5713 FT /codon_start=1 FT /product="19 kDa protein" FT /db_xref="UniProtKB/TrEMBL:B1N162" FT /protein_id="ACA52186.1" FT /translation="MSQDCTELVEFLGQSSGSCNSNRGSLESLSYLECLHLLTDLKSLG FT YPSIDNILYILGGGSADRFEIFRIFRRHGIGIGEALQLGITKSLCYSPRAVIEILDDLL FT GRLGRGSAFLPCDLGATKGELLITLHPSRLSVDLYVNNKKVCTRVSQVVSDSGYVSRRF FT AGYPGIALRSKGN" FT CDS 5655..6491 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q06J10" FT /protein_id="ABH06982.2" FT /translation="MSPGDSQGTQGSRSDLKEIKIFNVKRNTKDLESLNKSLHRGDVYD FT TELIERVFPRRTKKCVVHRELIVKDGRVDCDLDLMDSGLDDVDEDEFPLYHVGCIVVAL FT MPHGKNLQGKVAVEVIDTRLKSGAARISRSLMDLSKPLSACADFPGYFISTADLLNGYT FT LHLSISTTDLQFVDGVHPFSVQLMNIGRFCGDDMKTRYAVSEASKILHQNILNSEGDGE FT EIPHGVHVQKVPDTLVMPEVYETIKKLGLKTNGSLRKEGGNEGNHRGAGAGESHPI" FT CDS 6415..7011 FT /codon_start=1 FT /product="capsid protein" FT /db_xref="GOA:Q06J08" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q06J08" FT /protein_id="ABH06984.1" FT /translation="MAHYAKRVEMRAIIEELVLAKATPSEDATESGYDRTMYLNTLFGY FT IALVGTSKKAIHYGEVDIVGPKASKKTGIDPRGKLVVSELVGRMRTLSVAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVLMAEMGTYSQLATKMTRSGFKEPQVMFDFASGLDLKALTLQ FT EATVIQAMHSRLFRTEGAKGVFNAQASVGEQAVEI" FT CDS 7012..7284 FT /codon_start=1 FT /product="RNA-binding protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q06IY3" FT /protein_id="ABH06981.1" FT /translation="MDDPSFLAGRSTYAKRRRARRMNVCKCGAIMHNNKDCKSSSISGH FT KLDRLRFVKEGRVALTGETPVYRTWVKWVETEYHIYILETSDDEE" FT 3'UTR 7285..7352 XX SQ Sequence 7352 BP; 2151 A; 1529 C; 2059 G; 1613 T; 0 other; cgaatattta acttgattcc catcgactat aagtgaacaa acgttactag cacctgcgct 60 ctgcgaaata cctgtgaatt cacctagatg tcgatatcag tatcctccca acgtgtagca 120 gtatccaacc tctacaccaa cggatctgag gaatcagtta aagcgatcaa agaactgaaa 180 agtaaacggt tattggagac cgaaacccgg ttagatgggc tatttgacta ctacatccct 240 gacaccttga gagaaattct ctctggttac ggtatggagt tcagcgttca ttctttccag 300 gggcatgcac acccagtaag taaaatgatc gaaaatcaca tgctgtatag aatcgcacca 360 aactattttt ctagtaatac attggtagtt agctgtaaag aaagcaaggt aaagcgtctt 420 agactaagaa acgctaattc aaggaatttg aatatcgagc aatacaatag gctggttcac 480 gcaaaagacc atcacaggta cgagaatgca ttcagggaat tggacgtcgg aaatctgacg 540 aatttgatca acaaagagga tcaccaccaa tgcattttta tacatgacga ggtccaatat 600 tggagcttgg atgagatgca gcgctttcta ggtagtttga attcagtaaa tagagtagtg 660 tatagcataa tttacccagc agaagtagag gcagggtact ctcaaagcct cttcccagaa 720 gcctatacat ttgatcttaa ggagggtagg gtgatttggt acccggatgg taaagccgag 780 ggtgcatata cccaacctat caatccgtgg cttctcagat gctctaagac gatcgattcc 840 aaggatagag catggaccat aacaaagctg caaacggttg gtgctcacca ccttttcagt 900 gccatcaggg ggagttatct aacggaggat tcctacaaat atgataactt cactgtgatc 960 aaccccaatg acatcctgcg aggaaggagg ggaagcaagc cattgtacct ccgggccaga 1020 atgatcaagc cgacgttgct atatctccta gcactcaaga agagcgactc gaattcagcg 1080 gtggccaagc taagaatgct gagcagcagg gaagaaaaca tggatgaagc cctttttgtg 1140 gcccagctag caaagcagat aaaggacaca gccctgtacg acaaaatggg gaatcccagt 1200 ctgcgaagca tcctgtccga gtccttcttt gatatagccg gcaatctctt cactcgcctg 1260 ttcaacaaac cagaatacga tgcgagatgt ctagagaagt tcatcagggc atgcgacaca 1320 acagagttcc acatagctcg aaggttcatg gaagggacga ggcgaggagc gccgtttaag 1380 gtgcaggacg tggctgattg gatagaggat gaaggtgctg gcatcctgag cgaggtaaac 1440 tttgtggagg tgagtaaaga tgatcgcgaa ccgagcccct atgggacatc cgccatgaac 1500 tccaagagta aaagactgca agtgccgtta actagaatcc tccgggcgca gaatctgata 1560 atggaaatgc aggcaccagt ggagatcaat caggtgcgcg tcgtgtgctc ttttagagcg 1620 ctcgtctacc ttcgctgcta cctcatcagg ctcgggagat tcagattcat ggagagtaga 1680 gctatatgcg acatcgagaa tcttcaatca ggtttggagg aaggcctact cacggaggaa 1740 gaggtcgagg caaggctatt atcatctgaa agcgagggcg agtgcgagga gagtatagtc 1800 aaaatggccc ctgaacgagt ggaagaaagg gaagaggtca agtactctgg ggtacgcaag 1860 ctatgccagg agagcatcta caccgacacc cttaaaggaa gggaggtagc attctacagt 1920 aggcacagca aggaatacag ctacaccagt ggttcacatc gatccctggg ctgggataaa 1980 gcactggatg agctaatagt ggaactgggt ctggacgaaa gttatgacca ctgcctcatc 2040 caaagatact ccaagggtgg gagcatcggc ttccatgcag atgatgaacg ctgttacttg 2100 cccgggggtt ctgttgtaac tctgaatcta cacggtgagg caatcttcga ggtcaaagag 2160 aatgccactg gaaaggtcca aaagatcaaa ctgggtgacg gggacgtgta cacgatgggg 2220 ccggggatgc agcagaccca caagcataga gtagaatcct gcacagaagg gcgttgcagt 2280 gtgaccttga ggaataagac cacagactat gagaccaggc aggaaggaaa taattcagag 2340 tacgaggagg acgtggctga actggatgag ggcatcgagt acctgaaaaa gaattctggt 2400 aacatgtgct cccttaaagc cttcgcagac cacatgcagc taagcatccc aagcgtgata 2460 tcaatagtga acggagcttc ccctcagacg ctcagggaga tagaaagcgg gggaatcagc 2520 gtagccacac tcgtgaacct ttcaaaagca ttggacttcc cagtagcgat tcacggggag 2580 agaggctatg ccgagaccat gggggactac agaaagctgc atctgaagat aacggctggt 2640 cacgtggagc cattcgaagg ggtgaatagt agaggaggct tcaaggaggc attactcttg 2700 agtgacggga tcggaatagg caggttcagg gttgacaaga gcaaggccga cagactggct 2760 cagagcttcc acaatgggaa cacgggggtg ctccttggaa agtacaacaa aggaaagata 2820 catgctgaat ggttggatga accaaaagag gtgctcacag cctttggatt cgccggctca 2880 gggaaaagtc actggtgtca aaccatactt aaacactgtg cggttgagaa ggtacttgtg 2940 ataagtccaa ggaaggttct caaagatgat tggaccagca agatctcgaa gaaacacaaa 3000 gtggtcacat tcgaggtggc tttcatggat gattatggtt gcaaagacat agtcatagac 3060 gagatcggtt tgctaccacc tgggtacata gatctggtca tcgcggtgca caggccaaga 3120 gttctggtcc tactggggga tcccttacag agcacgtacc acagtaaaag ggacaacgtg 3180 gtgctagagg caagtcagga ggatgtcttc tcaagggtgc aagggaattt gccgtatttg 3240 tgctattctc atagactgcc aaagaactgc acgctgttcg agctagaatg catgggagcg 3300 gagtgtgaca aaagaatagt ccaccgttct aaccgattga aagatgagcc ggtgatctgc 3360 gcgacaagag caatgaaaga ggagaagggg tcagggtggt acactgtcag cgaaacccaa 3420 ggactcagtt tcaaatcctg tctcatttac ttggacgagc actggggaaa gaaagaggat 3480 gaggacgtca tggtcgcctt gaccagatca aggggagaaa tcggaattca tgctagccca 3540 gctttaaaga agtctttgat atctacagcc aagagcacac tcttgcgaaa ggtgctcaaa 3600 ggagaaacct acagaagatc cgagatcgtc gcgatggtca aaaagcacat cccggaggtc 3660 acggtgatgt tcgaggaaag caggttggct gagaacgtgg actacgaggc tagactcgct 3720 ggtgatccat acctcaaatc gctactctcc ttgtatgacg agattgagat ggaggaggtt 3780 gagatagagg aaccgacagc actcgaaccg gtaaaaactc acctcgcact cagtgaaaaa 3840 ttgaatgagc tagcaccgtt tgacctcaag gccaaagaag acagggagca atacactgag 3900 gctgggcgaa cagagcagat cgatgaagag gggtacaaag gagaggatgc caaccctatg 3960 acccacaaag ccctttactt gagacacaca tcagatgaca cggccacttt catgatgtca 4020 gtcaaaaaga gattgagatt cagaaatttc gaggccaaca gaaggaagta caaagcctgc 4080 cacgggatag gtcagcagat gttctccgtt tttaaggaga tctaccagct caaggagatc 4140 gactcactac cggagctgga gaggtgtgag atggaattca tgaaaaagag agttgaaaag 4200 agtgcagttt tgatagagca gcacgctggt aggagcgacc ctgattggcc cagtaattac 4260 ctgaagatct tcctcaagca gcagacctgc acaaagatgg agaagagggg agtcgatgca 4320 aaagctggac agaccatagc gtgcttcgcg cattcggtat tgtgcaaatt cggccccacc 4380 ctaaggcaaa cagagaaggc cctgagggag ctgctgccag aaaacgtgat gatctactcc 4440 cagaagaatt acatggatct ggacaaatgg gcaaggacct gggtggaaag catgaccggt 4500 actgattccg attatgaagc gtttgaccga tcacaggacg agaaagtgct agatctggaa 4560 gtagaggtgt tgcgtttctt tctctggcca gaggatttga tcagggagta cgaggagctc 4620 aaactaatga tgggatgctc attaggggac ctggcggtga tgcgcttctc cggggagttt 4680 ggcacattct tcttcaacac tgtgtgtaac atggtcttta cttgcatgcg ttatcacatc 4740 gatcgcaata ccccggtttg tttcgcaggt gatgatatgt actcccctgg aatactgaga 4800 gtcaagaagg actatgaggg aaccctagag cagctcaccc tgaaggcaaa ggtgcatata 4860 tcggaggaac cacttttctg tggatggcgg atgagcccgt ttgggatagt aaaggagccc 4920 aacctgatcc tggacaggtg gaagatggcg aagaggaatg gggacctatc gctgtgtatg 4980 gtaaactatg ctatcgaggc aagcttcggg tacaggttaa gcgagcacct gtatgacatt 5040 aatattgatg ttgatgcaca gcaggagttg gtaagagaga tagtggagag gaagcacttg 5100 ctccccaaga aaatcgctaa tctcttcagt gatgatgaat gtgaggctca cagcgacggt 5160 gatgaggatt tcttaagcaa ggatgtcgca ggattgtaca gagttagttg aattcctagg 5220 tcaaagtagc ggtagttgta attcaaatag agggtctttg gagtctttgt cttacctaga 5280 gtgtctacat ttattaaccg atttgaagag tttagggtac cctagtatag ataatattct 5340 ttatattctg ggtggtggta gtgcggatag attcgaaatc tttcggatct tccggaggca 5400 cggaattggg attggagagg ctttacagct aggtatcaca aagagtttgt gttacagccc 5460 gagggcagtg atcgagatac tggacgatct gctgggcagg ttgggcagag gaagtgcatt 5520 cctaccgtgt gatctagggg cgaccaaggg ggagttactg ataactctcc atccatctag 5580 gttaagcgta gatctatacg tcaataacaa gaaggtgtgc acaagagtga gtcaggtggt 5640 gtcggacagc ggatatgtct ccaggagatt cgcagggtac ccagggatcg cgctcagatc 5700 taaaggaaat taagatcttc aatgtcaaga ggaacacgaa ggatctggag agtctgaaca 5760 agagcctgca cagaggcgat gtctacgaca cagagctcat agagagggtg ttcccacgaa 5820 ggaccaagaa atgcgtagtg cacagagaac tcatcgtcaa agacggccgt gtagattgcg 5880 acctggatct gatggactcc ggtctggacg acgtagatga ggatgagttc cctttgtacc 5940 acgtcggctg catagtcgtg gcgcttatgc ctcatggcaa gaatttgcaa gggaaggtgg 6000 cagtggaagt gatcgacacg cgcttgaaga gtggagccgc ccggatctca agaagcctca 6060 tggacttatc caagccactc agcgcttgcg cggacttccc gggttatttc atcagcactg 6120 ccgatctgct caacgggtac acgttgcatc tatccatcag cacaacggat ctacaattcg 6180 ttgatggtgt gcatccattc agtgtgcagt tgatgaacat tggcaggttc tgcggggatg 6240 atatgaaaac gaggtatgca gtctctgaag cgtctaagat cttgcaccag aatatcctga 6300 attcagaggg ggatggcgag gagatcccac acggggtgca cgtgcagaag gtaccagata 6360 ccctagttat gccagaagtt tatgagacaa taaagaagct gggactgaag acaaatggct 6420 cactacgcaa agagggtgga aatgagggca atcatcgagg agctggtgct ggcgaaagcc 6480 accccatctg aagacgctac tgagagcggc tacgaccgaa ctatgtacct gaatactctc 6540 ttcgggtaca tcgccttggt cggtacaagc aagaaggcga tccactatgg ggaggtagat 6600 atagtaggac ctaaagctag caagaagacg gggatagacc cacgcgggaa actggtggtt 6660 tcggaattgg tcggaaggat gagaactcta agcgtagccg tcagcgaggg accggtcaaa 6720 ggggcaacac tcagacagat gtgcgaacct ttcgcacaga atgcttacga cttcctcgtg 6780 ttgatggcgg agatgggaac gtattcacag ttagctacaa agatgacaag gtcaggcttt 6840 aaggagccac aggttatgtt cgatttcgca tcgggcttag atctgaaagc actgacgtta 6900 caagaagcta ctgtgataca ggctatgcac tctcgtctct ttcggactga aggtgcaaaa 6960 ggagtgttca acgcccaggc ttcggtcggt gaacaggctg ttgaaatata gatggatgac 7020 ccatcgtttc tcgcgggtag gtccacgtat gctaagcgta ggcgcgctag gcgcatgaat 7080 gtgtgtaagt gtggtgctat aatgcacaat aataaggatt gcaaatccag tagtatctca 7140 ggtcacaaac tcgacaggtt gaggttcgtg aaagagggaa gagtagcctt aacaggcgag 7200 actcctgttt accgaacttg ggtcaagtgg gtggagactg agtaccatat atatatatta 7260 gaaacctctg acgatgagga atgatcgtct atcctagcta acgagtgaat aataacttaa 7320 taataaagca agctaggttg tcatactatg ac 7352 //