ID DQ836063; SV 1; linear; genomic RNA; STD; PHG; 3573 BP. XX AC DQ836063; XX DT 06-AUG-2006 (Rel. 88, Created) DT 01-SEP-2006 (Rel. 89, Last updated, Version 2) XX DE Pseudomonas phage PRR1, complete genome. XX KW . XX OS Pseudomonas phage PRR1 OC Viruses; Riboviria; Leviviridae; Levivirus. XX RN [1] RP 1-3573 RX DOI; 10.1128/JVI.01005-06. RX PUBMED; 16940544. RA Ruokoranta T.M., Grahn A.M., Ravantti J.J., Poranen M.M., Bamford D.H.; RT "Complete genome sequence of the broad host range single-stranded RNA phage RT PRR1 places it in the Levivirus genus with characteristics shared with RT Alloleviviruses"; RL J. Virol. 80(18):9326-9330(2006). XX RN [2] RP 1-3573 RA Ruokoranta T.M., Grahn M.A., Ravantti J.J., Poranen M.M., Bamford D.H.; RT ; RL Submitted (03-JUL-2006) to the INSDC. RL Department of Biological and Environmental Sciences and Institute of RL Biotechnology, University of Helsinki, Viikki Biocenter, P.O. Box 56, RL Helsinki 00014, Finland XX DR MD5; fbd4f56a03eab9d742bc2e337fa256cd. DR EuropePMC; PMC1563911; 16940544. XX FH Key Location/Qualifiers FH FT source 1..3573 FT /organism="Pseudomonas phage PRR1" FT /mol_type="genomic RNA" FT /db_xref="taxon:12024" FT CDS 106..1359 FT /codon_start=1 FT /transl_table=11 FT /product="maturation protein" FT /db_xref="GOA:Q0PH28" FT /db_xref="InterPro:IPR005563" FT /db_xref="UniProtKB/TrEMBL:Q0PH28" FT /protein_id="ABH03626.1" FT /translation="MTKRKYRLRRSGILRQTFSAENKSDWTTSTGQRMTQTNISSADVG FT VEYATIYRGKGRWVWVQHPEGFLFPWRMPSSYTRGHQVIDLTSSTSTITWASPFSKGSG FT TRTGVPFENLLNRGNWESFMESRLDMRPLLTYNEMARNNVAIRLKVGDAKVNLSVFAAE FT MKRAVTGLASNFITVVGLYRAVRKGDFKRVASLIKPDPRQKGFSSRDVAGRWLELNYAI FT IPLLNDIRGGYEYISENFEKLMTYSVSSNLKTPVPLHYVEDSSSVSMQASGFRGVRTKV FT HYVIDLPGLREASRVGLINPLLVGWELVPYSFVIDWLLPVGNMLEAFTATHGTKFISGT FT RTRWCDIDLNGTVRSQYEGYVDWPNSGLSEQPFTGKIYSISRDVLYDYPMVLPYVKNPF FT STTHLINAVALIRNLFKR" FT CDS 1401..1799 FT /codon_start=1 FT /transl_table=11 FT /product="coat protein" FT /db_xref="GOA:Q0PH27" FT /db_xref="InterPro:IPR002703" FT /db_xref="InterPro:IPR015954" FT /db_xref="UniProtKB/TrEMBL:Q0PH27" FT /protein_id="ABH03627.1" FT /translation="MAQLQNLVLKDREATPNDHTFVPRDIRDNVGEVVESTGVPIGESR FT FTISLRKTSNGRYKSTLKLVVPVVQSQTVNGIVTPVVVRTSYVTIDFDYDARSTTKERN FT NFVGMIADALKADKMLVHDTIVNLQGVY" FT CDS 1780..1944 FT /codon_start=1 FT /transl_table=11 FT /product="lysis protein" FT /db_xref="GOA:Q0PH26" FT /db_xref="UniProtKB/TrEMBL:Q0PH26" FT /protein_id="ABH03628.1" FT /translation="MCKVSTKVDSKLTESVGQLTIRSYLWLRNILALAGLLFVILLATN FT HLSIAIYSP" FT CDS 1854..3476 FT /codon_start=1 FT /transl_table=11 FT /product="replicase" FT /db_xref="GOA:Q0PH25" FT /db_xref="InterPro:IPR005093" FT /db_xref="InterPro:IPR007096" FT /db_xref="UniProtKB/TrEMBL:Q0PH25" FT /protein_id="ABH03629.1" FT /translation="MATEYPSISRTSFRNPSCDQSFIHRYLQSVSPATKPGDPNFSREG FT YLTASFLSKFANPSKESAAERRSRAIGKLLETEKRNLRTIERLDKPTNFGGISSDSLLY FT TASRFIADLLGPFSYDVFALGGFSNGASTSRRRVSGDAISKFDGKGDVTLRALPYISAL FT INLTPSWKRSVTEQCFRMGRDPLRVVEGNVVFTVPKSDDIDRAAAKEPDLNMFLQKAVG FT NHIRRRLRGKGIDLNDQSRNQELARLGSIDGSLATLDLSSASDSVTWKLVLELLPPDWA FT NVMFDLRSPRGLINGEWHEWATMSTMGNGFTFELESLIFWALARSAAYYFGCPGVISVY FT GDDIIVPTKLAKPLINLLGYCGFIVNPDKSFWTGRFRESCGAHWHAGIDVKPFYCKEPL FT IGVQRLIWFLNQLRYWSGPTGICDPRYEDLYFKVRDMIPKSLRHKLRGGRDYGSNTELV FT TPDTDGYYLHCKMKKVIRSANPSLSEWLCNVTRNRSPESVPSLGLTVTEKMQLLDDYSL FT RPIRKERYHWEPAGDVRVFLREL" XX SQ Sequence 3573 BP; 886 A; 878 C; 880 G; 929 T; 0 other; ggaaacaccc ccctcgcggg gggtggttct ctggcgaacc agaagggggt ctttcgacct 60 tcgtctcaac gctagcacat cacaccgtac ttagagaggt catcaatgac taaacgaaag 120 tatcggttgc gacggtcagg aatcctccgt cagaccttct cagccgagaa taaatctgac 180 tggacgacgt cgactggtca acgcatgact cagaccaata tcagctctgc tgacgttggg 240 gtagagtatg cgacgatcta tcgagggaag ggacgctggg tctgggtgca acacccggaa 300 ggcttccttt tcccatggcg aatgccatct tcctataccc gaggacatca ggtcatagac 360 ctgactagct caacatctac gatcacgtgg gcctctccct tttcaaaagg tagtggtaca 420 cgtaccggtg ttccttttga gaacttactc aacaggggca actgggaatc gtttatggag 480 agtcggttag atatgagacc cttgctcacc tacaatgaga tggctcgcaa caatgttgcg 540 attcgcctca aagttggcga tgcaaaggtc aacttatctg tgttcgcagc ggagatgaag 600 agagcggtaa cgggtttagc atcaaatttt attacggtcg tcggtttata ccgcgccgta 660 cgaaaaggag attttaaacg agttgcctct ctcatcaaac cagatccccg tcaaaaggga 720 ttttcttcgc gtgatgtggc cggacggtgg cttgagttga actacgcaat catacccctc 780 ctgaatgata ttcgaggggg ctatgagtac atcagtgaga atttcgaaaa actcatgacg 840 tacagcgttt cttcaaatct caagacgccg gttccactcc attatgttga ggattcttcc 900 tcagtttcga tgcaagccag tggtttccgt ggcgtacgaa caaaagttca ttacgtcatt 960 gatcttcctg gtttgcgcga agcttccagg gtaggattaa tcaatccgtt actcgtgggt 1020 tgggaacttg ttccctactc atttgtaatc gactggttgc tacctgttgg aaacatgctg 1080 gaggccttca cagcgactca tggcactaag ttcatttctg gtactcgcac ccgctggtgc 1140 gatatcgatc tgaacggaac tgtccggagt caatatgaag gctacgtaga ttggcccaat 1200 tcgggtttat cagaacagcc attcaccggg aagatctatt cgatttcccg tgatgtgctc 1260 tatgattacc ctatggtcct cccctacgta aagaacccct tctcaactac ccacctcatt 1320 aatgcggtgg cgttgattag gaacctcttc aaacggtaga aataccaata tcacttgttc 1380 tcagaacaaa ggagtgcctt atggctcaac ttcaaaatct ggtcctcaaa gaccgggaag 1440 caaccccgaa cgaccacact ttcgttccgc gagatattcg cgacaacgtc ggtgaagtcg 1500 ttgagtccac tggtgttcct atcggtgagt cccgtttcac tatcagtctt cgcaagacga 1560 gtaacggtcg ttacaagtct acgctgaaac tggttgtgcc ggtcgtccag agtcaaaccg 1620 ttaacggtat cgtaaccccg gtcgtagtac gtacttcgta cgttactatt gacttcgatt 1680 acgatgcccg atcaactacc aaggaacgta acaacttcgt tggtatgatc gcggatgccc 1740 ttaaggcaga caaaatgctg gttcatgata ctatcgtgaa tttgcaaggt gtctactaag 1800 gtagactcta aactgactga gtcagttgga caactcacca taaggagcta cctatggcta 1860 cggaatatcc tagcattagc aggacttctt ttcgtaatcc ttcttgcgac caatcattta 1920 tccatcgcta tctacagtcc gtaagtccgg ctaccaaacc gggtgatccg aactttagtc 1980 gcgagggata tctgaccgct tcattccttt cgaaatttgc aaatccttcg aaagaaagtg 2040 cagcggagcg gcggtctcga gcgattggaa aattgcttga gactgaaaaa cgaaatttga 2100 gaaccattga acgacttgat aaacccacca atttcggtgg gatatcatct gacagtcttt 2160 tatatactgc cagccgattc attgcggacc ttttgggtcc tttctcatat gacgtttttg 2220 ctttgggagg attctccaac ggcgcatcga catcacgtcg acgtgtctcc ggggatgcaa 2280 tttcaaagtt cgacggcaag ggcgacgtta ctctaagagc cctcccttac atctcagcgc 2340 tcattaacct caccccttct tggaagaggt cagttactga gcaatgtttt cgtatgggta 2400 gggaccctct acgtgtcgta gagggcaacg tcgttttcac cgttcccaag tctgacgata 2460 ttgatagggc agctgcgaag gagcccgatc tcaatatgtt ccttcagaag gcagtgggta 2520 accacataag acgccgactg agaggtaagg ggatcgatct taatgatcaa tcccggaacc 2580 aggaacttgc ccgattaggt tccatagatg gcagtctcgc tacacttgac ttgtcaagtg 2640 ctagtgattc tgtcacttgg aaactagttc tcgagctact cccccccgac tgggccaacg 2700 tgatgttcga tcttcgatca ccacgcggct tgatcaatgg ggagtggcac gaatgggcaa 2760 cgatgtcaac catgggtaat ggcttcactt ttgagctaga gtccttaatt ttctgggctt 2820 tagcgcgaag cgcagcttat tactttggtt gtcccggtgt catatcggtc tatggagacg 2880 atataatcgt ccccactaag cttgccaaac cactaataaa ccttttgggt tattgtggtt 2940 ttatagtgaa ccctgataag tctttctgga ccggaaggtt cagagagagt tgcggggctc 3000 actggcatgc tgggatcgat gtgaaaccgt tctattgcaa ggaaccgttg atcggtgttc 3060 aacgccttat ctggttttta aatcagctaa ggtattggag cggacctacg ggtatatgtg 3120 acccacggta tgaggacctg tacttcaaag tacgggacat gataccaaag tcactccgtc 3180 acaaactgcg cgggggtcgc gattacggta gcaataccga gctcgttacc cctgacacag 3240 atggttacta tctccattgt aaaatgaaga aggtaatccg ttcagccaac ccgagtctct 3300 cggaatggtt gtgcaacgtg acacgcaata ggagtccgga aagcgtacct tctcttggcc 3360 ttacggtcac ggagaagatg cagctcctgg atgattacag cctgagaccg atccgaaagg 3420 aacggtatca ctgggaaccg gccggcgacg ttcgagtttt cctaagagaa ctttaaagtc 3480 gtcggacggg gtgttggaaa cacccctccc tcacgggtgg atgcttcggc tataaacagt 3540 tcgggaagct acgcttcgct tcccggacat cca 3573 //