ID DQ825771; SV 1; linear; viral cRNA; STD; VRL; 3621 BP. XX AC DQ825771; XX DT 24-JUN-2007 (Rel. 92, Created) DT 28-AUG-2007 (Rel. 93, Last updated, Version 3) XX DE Thottapalayam virus strain VRC 66412 segment M, complete sequence. XX KW . XX OS Thottopalayam virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Thottimvirus; OC Thottopalayam thottimvirus. XX RN [1] RC Publication Status: Online-Only RP 1-3621 RX PUBMED; 17711577. RA Yadav P.D., Vincent M.J., Nichol S.T.; RT "Thottapalayam virus is genetically distant to the rodent-borne RT hantaviruses, consistent with its isolation from the Asian house shrew RT (Suncus murinus)"; RL Virol J 4:80-80(2007). XX RN [2] RP 1-3621 RA Yadav P.D., Vincent M.J., Nichol S.T.; RT ; RL Submitted (27-JUN-2006) to the INSDC. RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 RL Clifton Road, Atlanta, GA 30333, USA XX DR MD5; 022578232e8e2b3df669e1623d362614. DR EuropePMC; PMC1997112; 17711577. DR EuropePMC; PMC4153883; 23871164. DR EuropePMC; PMC4507303; 26186516. XX FH Key Location/Qualifiers FH FT source 1..3621 FT /organism="Thottopalayam virus" FT /segment="M" FT /strain="VRC 66412" FT /mol_type="viral cRNA" FT /country="India:Vellore, Tamil Nadu" FT /isolation_source="Suncus murinus" FT /collection_date="1964" FT /db_xref="taxon:1980493" FT primer_bind 1..17 FT CDS 40..3405 FT /codon_start=1 FT /product="envelope glycoprotein precursor" FT /note="contains G1 and G2 glycoproteins" FT /db_xref="GOA:A6MD75" FT /db_xref="InterPro:IPR002532" FT /db_xref="InterPro:IPR002534" FT /db_xref="InterPro:IPR012316" FT /db_xref="UniProtKB/TrEMBL:A6MD75" FT /protein_id="ABH09887.1" FT /translation="MISIAKLAVCVSLLLCISATEHKPILLNCPHYGVIGAEYVWGTTR FT IGHFPLDEVKNMVFETTCSFGLPAHDPMTQMKVITWKEKETHGTSGEYFDKVASHTETE FT GDFKSLCTKTHYLTYPFKNGNSYCLNVHCNQTLCDVEVIVIIRAVHCLTQDMCVLYRSN FT IKIPIIFKKTHCIKSMLNEGKCFQPDFTIPYSPKIHTRMNLPVLCMLMPTDGQPEGTKE FT IVGQTSCTDIKLASWYSCLVGDYSMIFVHSDIKMRQIKLNLKFRTNPQGDDHSDRRSSR FT IHIIGHKNITTISNKQNTLTAFRGATDYTSLLYNVQSTDKKPTLFLGYTPTMSWTTCGT FT SYVPAVWRGHVDTWGSVIETDDCTIFCTLAGPGASCEAFSSSGIFSLNSTTCLIPHTHR FT FKGLGDQVTFMCQRVDFDLEFYCNGRHKVIRTKTLVIGQCIHTFTSFFSLFPSIAHSLA FT VEICVPGFHGFTAVCLITTFCFGWLWIPGATWMVLQILKIIVLFITNSTMDQRFKRILT FT KIKAEYRSTIGDTSCDYCKHECATNLEADNHIMYCKQGKCPYCLNEVYHSPAALQEHFK FT MCPLTDRFNKTIKDQILKTSTKPHSSLYKKLCVFRYTNRCYIFTVWVTLLFFQLVIWAA FT SAEVMNLEPEWNDNVHGVGVHKMTTDVELDFSIPSSSKFTYKRFLESPVGETKMQFALK FT ISQQKTIASIQKLGHWVDARWNTRTVFHCYGACSKFEYPWKSATCSKEHDFEYQTAWAC FT NPGDCPGINTGCTACGLYLDKPKSIATVIKLIQIDYEREVCVQLGNYNECKRVTGNDCL FT STNGVKVCLLSTTVKLGSTDTLVFFGPLQGGAVVFKNWCTSSCVYGDPGDVMLTENGEY FT NCPDFNGNFERICRFAQTPVCEYGGNTVSGYQRYLATKDSFFSINMTDPILERSKLEWY FT DPDATSRDHINVQITKDLDFENLGENPCRVTLKVLSIDGAWGSETGFSLNCKVSLLECN FT SFITVIKACDKAMCYGASSQTLQRGDNTVTIQGRGGHSGSKFKCCHEEDCAEEGLLAEA FT PHLARVKSVDVDTSEIYSDGSGECRITCWLSKTSEWFMGILSGNWLVIVVLVVIMILSI FT MLLSFFCPSKKHQA" FT primer_bind complement(3602..3621) XX SQ Sequence 3621 BP; 1194 A; 629 C; 739 G; 1059 T; 0 other; tagtagtaga ctccgcaatt acaagcagtt aacaataaaa tgatttctat agctaagtta 60 gctgtgtgtg tgagtctact actatgtata agtgcaactg agcacaagcc cattttgctc 120 aattgtccac attatggtgt tattggggct gagtatgtct gggggactac aagaattgga 180 cacttcccac tagatgaggt taaaaacatg gtatttgaga caacatgctc ttttggtcta 240 cctgcacatg accctatgac acaaatgaag gtgataactt ggaaagagaa ggaaactcat 300 ggtacttcag gggagtattt tgataaagtt gcaagtcaca cagaaacaga gggtgacttt 360 aaaagtttat gcacaaaaac tcattatttg acatatccct tcaaaaatgg aaattcatac 420 tgtttgaatg tccattgtaa tcaaacacta tgtgatgttg aagtcatagt tattataaga 480 gctgtccact gcctaacaca agacatgtgt gtactttaca gaagcaatat taaaatacca 540 attatattta agaagactca ctgtatcaaa tcgatgctga atgaaggaaa atgttttcaa 600 ccagatttca caatacccta tagcccaaaa atacacacta ggatgaactt gcctgtccta 660 tgtatgctta tgccaacaga tggccagcca gaggggacaa aggagattgt tggacagaca 720 tcatgcacag atataaagct ggcaagttgg tactcatgcc tggtaggcga ttattcaatg 780 atctttgtac atagcgatat aaagatgagg caaataaaac ttaacctaaa atttaggact 840 aaccctcaag gcgatgatca tagtgatcgt agatcatcta gaattcatat tattgggcat 900 aagaacataa ccacaataag caataaacaa aacacactaa cagccttcag aggtgcaaca 960 gattatacat cattattgta taatgtgcaa tctacagaca aaaaacctac actgtttcta 1020 ggctacacac caactatgag ctggacaaca tgtggcacaa gttatgtccc tgcagtttgg 1080 agaggccatg tggacacctg gggaagtgtt atagaaacag atgactgtac catattttgt 1140 actcttgcag gtccgggtgc aagctgtgag gcattttcta gttcagggat cttttcacta 1200 aattcaacaa catgtcttat tccacatact cataggttta aaggtttagg agaccaggtt 1260 acttttatgt gtcagcgggt agactttgat ttagagtttt actgtaatgg taggcataaa 1320 gtcataagaa caaagactct tgtgataggt caatgtatac acacattcac tagcttcttt 1380 tcactgttcc caagtattgc acactcacta gctgttgaaa tatgtgttcc aggcttccat 1440 ggattcacag cagtttgtct cattacaaca ttttgttttg gctggttgtg gatccccgga 1500 gcaacatgga tggtattaca gatactgaaa attatagtcc tttttataac aaatagtact 1560 atggatcaga gatttaaacg tattttgaca aaaataaagg cagagtatag gtctactatt 1620 ggtgatacaa gttgtgatta ctgcaagcat gaatgtgcaa caaatttgga ggcagacaac 1680 catattatgt actgcaaaca aggcaaatgc ccttactgtt taaatgaagt ctaccactca 1740 cctgctgctt tacaagaaca ttttaaaatg tgtcctctca ccgatagatt caataaaaca 1800 ataaaagatc aaatccttaa gacaagcacg aagccacata gtagcttgta taaaaaatta 1860 tgtgtgttca gatataccaa tagatgctac atctttacag tatgggttac acttttattt 1920 tttcagcttg ttatctgggc tgcaagtgca gaagtgatga acttggagcc agaatggaat 1980 gataatgtcc acggagttgg tgtgcataaa atgacaacag atgttgaact agatttttcc 2040 ataccttctt cctcaaaatt tacatataag cgattcttgg aaagccctgt aggtgagact 2100 aagatgcaat ttgccttaaa aatatctcaa cagaaaacaa tagcatcaat tcaaaagcta 2160 ggtcattggg ttgacgcacg ctggaatact aggacagtgt tccattgcta tggggcctgc 2220 tctaaatttg aatatccgtg gaagagtgca acatgttcga aagaacatga ttttgaatac 2280 caaacagcct gggcgtgtaa cccaggagat tgccctggga ttaacacagg atgcacagct 2340 tgtggccttt atctggataa accaaaatct atagctactg ttataaagct cattcaaata 2400 gactatgaga gggaagtttg tgttcagcta ggtaactata atgagtgtaa acgagttact 2460 ggaaatgact gcttaagcac aaatggagtt aaagtctgtc ttctaagcac cactgtcaaa 2520 cttgggtcaa cagacacatt agttttcttt gggccacttc aaggaggtgc agttgttttc 2580 aaaaattggt gcacgagtag ctgtgtctac ggggaccctg gagatgtcat gctaacagaa 2640 aatggggaat acaactgccc tgattttaat ggaaactttg agagaatttg tagatttgca 2700 cagactcctg tttgtgagta tgggggtaac acagtttcag gctatcaacg atatcttgct 2760 actaaggatt cttttttctc aatcaatatg actgacccaa ttctagagag gagcaagctt 2820 gaatggtatg accctgatgc aacatcccgt gatcacatta atgttcaaat aacaaaggac 2880 ctagatttcg aaaacttggg tgaaaatccc tgtagagtaa ctcttaaagt cctgagcatt 2940 gacggggcat ggggttcaga gacaggattt tcactaaatt gtaaagtctc attgcttgaa 3000 tgtaatagct ttattactgt tataaaggca tgtgataaag ccatgtgtta tggtgcaagc 3060 tcacagaccc ttcagcgtgg tgataataca gtaacaatcc aagggagagg tggacatagt 3120 gggtctaagt ttaaatgttg ccatgaagaa gactgtgctg aggaaggctt acttgctgag 3180 gctccacatc tagcaagagt aaaatctgtt gatgttgata caagtgagat ttactcagat 3240 ggttctggag aatgtcggat cacatgctgg ttatctaaaa ctagtgaatg gttcatgggg 3300 attttatcag gtaattggtt ggtcattgta gtattagtgg taataatgat actcagtatt 3360 atgctgttaa gctttttttg cccaagtaag aaacatcagg cttaatatag tgtattctct 3420 tatggctatc taatgttatg gcttttcact aacactacta agctgcatat atactaaact 3480 aataagaaat cataaaaaaa taagtaaaaa aataaaaaaa taaaaaataa aaaaataaaa 3540 aaataaaaaa acaaaaacaa ttttgggtaa taacccactt ctgtgattct ttgtcttttg 3600 ttcttgcgga gtctactact a 3621 //