ID DQ825770; SV 1; linear; viral cRNA; STD; VRL; 6581 BP. XX AC DQ825770; XX DT 24-JUN-2007 (Rel. 92, Created) DT 28-AUG-2007 (Rel. 93, Last updated, Version 3) XX DE Thottapalayam virus strain VRC 66412 segment L, complete sequence. XX KW . XX OS Thottopalayam virus OC Viruses; Riboviria; Negarnaviricota; Polyploviricotina; Ellioviricetes; OC Bunyavirales; Hantaviridae; Mammantavirinae; Thottimvirus; OC Thottopalayam thottimvirus. XX RN [1] RC Publication Status: Online-Only RP 1-6581 RX PUBMED; 17711577. RA Yadav P.D., Vincent M.J., Nichol S.T.; RT "Thottapalayam virus is genetically distant to the rodent-borne RT hantaviruses, consistent with its isolation from the Asian house shrew RT (Suncus murinus)"; RL Virol J 4:80-80(2007). XX RN [2] RP 1-6581 RA Yadav P.D., Vincent M.J., Nichol S.T.; RT ; RL Submitted (27-JUN-2006) to the INSDC. RL Special Pathogens Branch, Centers for Disease Control and Prevention, 1600 RL Clifton Road, Atlanta, GA 30333, USA XX DR MD5; 400a4d56ae1c7fdb5418f4bcf3d1533c. DR EuropePMC; PMC1997112; 17711577. DR EuropePMC; PMC4507303; 26186516. XX FH Key Location/Qualifiers FH FT source 1..6581 FT /organism="Thottopalayam virus" FT /segment="L" FT /strain="VRC 66412" FT /mol_type="viral cRNA" FT /country="India:Vellore, Tamil Nadu" FT /isolation_source="Suncus murinus" FT /collection_date="1964" FT /db_xref="taxon:1980493" FT primer_bind 1..19 FT CDS 63..6515 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /db_xref="GOA:A6MD74" FT /db_xref="InterPro:IPR007099" FT /db_xref="InterPro:IPR007322" FT /db_xref="UniProtKB/TrEMBL:A6MD74" FT /protein_id="ABH09886.1" FT /translation="MQRYYEIRDRIHGLEPGGVGAIECIDLLDSLYAIRHDLIDEMIKH FT DWSDNKDKETPISDVLIYAGIPLDLITGMEKIRITDHPTGKTLHQFFKSTPDNYKIEGN FT IIKFIEVTVTVDVDKGIYEKKKKYQGGFNQIQVELDKYWQQGKLPNKYTITYDIVAVKA FT DGSNLSTQWPSTRSPGVVQHMRMVQAEIQYVRERLIRSNEKSALESMFNLKFHTHVERE FT FKYVLPEYPDVPDCEADQDRLLSHLKGWLTKKQTFSFHEVTGERISQAFKKYEAEQEDM FT YPKSRKPRNFLLLQIGLQSEYNPMTISMAQVDTKLAASIIISEPPETPVQALVKDVCYN FT YMMLDNIEINNYYSPAHLFDKTRNVPEPGCLKINMSSLDEASKSIIEQTKGSQDKGSSE FT IESLHPWAQSEANTSISIIEKILTNLEMHVATDAEDITSYRKRSPVDTLLERFIKSETE FT KYLIKVLKKTVGWHLGHLVRDVTESMIAHAGLKRSKFWSLSGFHQGNVLLIMMPSKSLE FT VSNAHVRFILVHKEGFGCVDPDNIDSRKSINGVIWVYSKPMTLDLNRLLALNICFEKAF FT LATAVWFQYFTEDQGMFPLQSSIKSVFAYKLLLAMTQKMKVCALFDNLRYLIPSCTASY FT SGAASLIEKFVKRPFKSSLEVYVYVKSKELLISLAQNNKFRYYSKVRMLGLTVDQSSVG FT ATGIYPSLVCHTVYRHYKSLISEITTCFFLFEKGLHGTMTEEAKIHLETVEWANNFKGK FT EMKYGKDLVESGYDIEQLIDGEIIPEQQLYCKNVIKLATIELNKVLTSKSQVISNSIMN FT KHWEEPYFSQTRNISLKGMSGELQEDGHLASSYTLIEAIRYLNKAKRNPTVLELYNETR FT DIRAQARIVRKHQRTEADRGFFITTLPTRVRLEIIEDYFDSISKNVQEEYISYGGEKKI FT LQIQGSLEKALRWASGTSTISLSTGEQITFKRKLMYVSADATKWSPGDNSAKFRLFTSH FT IHDGLKDRRLKHCVIDALKGIYETEFFISRRLRGYIENMEKLEHNVQEFLDFFDHSKGR FT SGLVRGNWLQGNLNKCSSLFSVAISFLFKEMWSKLFPELDCFIEFAHHSDDALFIYGYL FT EPEGDGSDWYLYVTQKIQAGELYWHSVNTEMWKTMFNMHEYLLLLGSVKVSPKKTTVSP FT TNAEFLSTFFEGCAVSIPFSKILLGALSDLPGLGFFDDLAASQSRCVKALDMGASPQVA FT QLAVNLTNSKVERLYGTAPGMANNPCNYIDLDRDKIPICLGGIGSSSILELATAGIGMS FT DKLVLKNALISFRHTKQLKDKYILGIYKFLMLLAQETFQHERLGEFSFLGKVQWKVFIP FT KNEFEFSNLFSINYLSQWSAEHPVYDYIIPQLRDDLLVYLVRKLNDPSIVTAMTLQSPL FT QLRFRMQAKQHLPVCKYNDNWVTFRTVLAAAHEYALKYVPNEIDLDLFNTLVSCTFSKE FT FAWKDFISNTECEVIMSRKIHRAKVARVFTVKERDQIIQNPISVVIAYKFAVGTNEIKD FT VLDKAKFPDSLSSDLKLLYEGVYRELGLDINDPSVMKRVAPMLYKTSRSRIVIVNGNVE FT GTAESICTYWLRSISYVKQIKIIPHAEVLKAVSIFSKGEFIQEDKQLAALRLCIEIWRW FT GKYNRVDINDWFAALWFEGKTLWDWLYYFQRKGVPLVDPEIQCAGLMMYDLLRDMTCLQ FT MHANRRAYSGKQYDAYCMQTYNEETKLYEGDLRVVFNFGIDCARLEIFWEKQTYILETS FT ITSKPVLRVLMQEVSTELQRCGLKFDTIQSIGFKSVVLFKTDSGFEWGKPNVPCIIFKN FT CALRPNLRNKQVLNKEFIITILDNGFKAIAQQDLDSNRFQLAHAYHNLRDIRYQALETV FT NTVNFTVDGKILYLNPIIAAGLIENFMKGLPAVIPPQAYSLIMKKAKITVDLFMFNKLL FT GLINPENTFNMDGIESDDPEYSTVTTLSVKDWAEEKDIEDAEVEDDEYVIDLNDIDFDK FT VDTLADIQHFLQDESAYTADLVIDTEATESKRVRGIVKLLEPIKLIKSWVSKGLAIEKI FT YDPLAVILVTRYFSKQYSFSKVPLAQLDPYNLTELESIVRGWGELVCDQFYELDQQAHA FT FIQRTNKAPEDLTPDSLFSFRHAELLFSRLFLPDTVSVFY" FT primer_bind complement(6562..6581) XX SQ Sequence 6581 BP; 2169 A; 1050 C; 1341 G; 2021 T; 0 other; tagtagtaga ctccggaagt agacaataga gaaaacacca gcaatacata cctgcattca 60 agatgcagag atattatgag attagagata ggatacacgg ccttgagcca gggggtgtag 120 gggcaattga atgcattgat ctcctagact ctttatatgc tataaggcat gatctaattg 180 atgagatgat aaagcatgat tggtctgata acaaggacaa ggaaacacct atatctgatg 240 tgttgatcta tgcaggtatt cctctagatc tgattacagg tatggaaaaa atcagaatta 300 cagatcatcc tacagggaag acactgcacc agtttttcaa atccacacct gataattaca 360 aaattgaggg caatattatc aagttcatag aggtgacagt gactgtcgat gtagacaaag 420 gtatatatga aaaaaagaaa aaataccagg gcggatttaa ccagattcaa gtggaattgg 480 ataaatattg gcagcaaggt aaattgccta acaagtatac aataacatat gatattgtag 540 cagttaaagc tgatgggtct aacttatcga cgcagtggcc tagtacacga tcaccagggg 600 ttgttcaaca tatgagaatg gtgcaagctg aaattcagta tgtaagagaa agacttataa 660 gaagtaatga aaaaagtgcc cttgaatcca tgtttaacct taaatttcat acacatgttg 720 agcgggagtt caagtatgtc ctgccggagt acccagatgt tcctgattgt gaggccgacc 780 aggacagact cctttcacat ctgaaaggat ggcttactaa gaagcagact ttttcttttc 840 atgaggtcac tggtgaaaga ataagtcaag ccttcaaaaa atatgaggct gaacaagaag 900 atatgtaccc aaaatcacgg aaaccgagaa attttctact cttgcaaatt ggattacaat 960 ctgagtataa tcctatgact atatctatgg cacaggttga cacaaaattg gctgctagta 1020 tcatcatcag tgagccacct gaaacacctg tacaggctct tgtaaaggat gtttgttata 1080 actacatgat gttagataat atcgaaatta ataattatta tagtccagct catttatttg 1140 acaaaactag aaatgtccca gaaccaggtt gtctaaaaat caatatgagt tcattggatg 1200 aagcatcaaa aagtatcata gagcaaacta aaggttccca ggataaagga agctctgaaa 1260 tagagtcact tcacccttgg gctcagtcag aggctaatac atctattagt attatagaaa 1320 agatcctaac aaaccttgaa atgcatgtgg caactgatgc tgaagatata actagttata 1380 gaaaaaggtc ccctgtagac acactcctag aaagatttat aaaaagtgaa acagaaaaat 1440 acttgattaa agttttaaag aaaactgtag gttggcatct agggcactta gtgagggatg 1500 tgactgagag catgatcgct catgcaggtt taaaaaggtc aaagttttgg tcactctcag 1560 gttttcatca aggtaatgtt ctgttaatta tgatgccgtc aaaatcacta gaagtctcta 1620 atgctcatgt aagattcatt ctagttcaca aagagggttt tggctgtgta gatcctgaca 1680 atattgattc aaggaagtcc atcaatggtg tgatttgggt atactcaaaa ccaatgacac 1740 ttgatctcaa caggcttctt gccctaaata tttgctttga gaaggcattc ttagcaactg 1800 cagtttggtt tcagtatttc actgaggatc aaggtatgtt tcctttacag tcctcaatca 1860 agagtgtctt tgcttataag ctacttcttg caatgacaca aaagatgaag gtctgtgcac 1920 tgtttgataa tcttaggtat cttataccat catgcacggc tagttattcc ggtgctgcta 1980 gcctcattga aaaatttgtg aaaagaccat ttaagagctc attggaagta tatgtttatg 2040 taaaatcaaa agagctactg attagccttg ctcaaaacaa taaattcagg tattactcaa 2100 aagtaagaat gttaggttta acagttgatc aatcaagcgt tggtgcaact ggaatatatc 2160 cttctttagt ttgtcacacg gtataccggc attacaagtc acttatctca gaaataacta 2220 cttgcttttt cttgtttgaa aaaggtcttc atggtacaat gacagaagaa gctaagattc 2280 acctagagac tgttgaatgg gcaaataatt ttaagggtaa agagatgaaa tatggcaaag 2340 acctagttga gtctggttat gatattgaac aattaattga tggtgaaatt attcccgaac 2400 agcagttata ctgtaaaaat gttataaagt tggctacaat tgaactaaat aaggtcttaa 2460 catcaaaaag tcaagtcatc tccaattcaa tcatgaataa acattgggaa gaaccttact 2520 ttagccagac taggaacata agcctaaagg gtatgtctgg agaattacaa gaagatggtc 2580 acttagcatc tagctacact ttaattgaag cgatacgcta tctgaacaag gcaaagcgaa 2640 atccaacagt gctagaactt tataatgaaa ctagagatat tcgtgcacag gctaggatag 2700 taagaaaaca tcaaagaaca gaagctgata gaggtttttt tattactaca ttaccaaccc 2760 gagttagact cgagattatt gaggattatt ttgattctat atcaaagaat gttcaggagg 2820 agtatatttc ttatggaggt gagaagaaaa tccttcagat tcagggttct ctagaaaaag 2880 cattaagatg ggcctctggg acaagtacta tatctttatc aacaggtgaa caaataacat 2940 tcaaaaggaa gctaatgtat gtaagtgcag atgcaacgaa atggtcacct ggagataatt 3000 cagcaaaatt ccgactattt acatcacata tccatgatgg tttaaaggat agacgattaa 3060 agcattgtgt cattgatgca ctgaaaggta tttatgaaac agagtttttt atttcaaggc 3120 gattaagagg ctatattgaa aatatggaga agttagagca taatgttcaa gagtttttag 3180 atttttttga ccattcaaaa ggtagatcag gtctcgtgag gggtaactgg ttgcagggaa 3240 acttaaataa gtgctcttca ttattctctg ttgctataag ttttctattt aaagagatgt 3300 ggtcaaaact atttcctgaa ttagactgtt ttattgagtt tgcccatcac tctgatgatg 3360 ctttgtttat ttatggttat ttggagcctg aaggtgatgg atctgattgg tacttatatg 3420 ttactcaaaa gatacaagca ggtgagctat attggcattc tgtcaataca gaaatgtgga 3480 agacaatgtt caatatgcat gaatatctac tactgttggg ctctgtaaag gtctctccta 3540 agaaaactac tgtttcacca actaatgctg aatttttatc aacatttttt gaaggctgtg 3600 cagtttctat tccattttca aagatcttat taggtgcact atctgatttg cctggtttag 3660 gtttctttga tgacttggct gcatcacagt ctcgttgtgt aaaagctcta gacatgggag 3720 catcacctca ggttgcccag ttagcagtta atttaacaaa ttccaaggtt gagcgattgt 3780 atggtactgc accaggtatg gcaaacaatc cttgtaacta tatagacctt gatcgagata 3840 agatacctat atgtttaggt ggtattggct cttcctccat attggaactt gcaactgcag 3900 gaattgggat gtctgataaa cttgttctaa aaaatgctct aatttcattt agacatacaa 3960 aacagctaaa agacaagtat attttgggaa tatacaaatt cctcatgtta ttagctcaag 4020 aaacatttca acatgagcga ttaggggagt tctctttctt gggtaaagtc caatggaaag 4080 tattcatacc aaagaatgaa tttgagttct ctaatctttt tagtattaat tatttaagtc 4140 aatggtctgc agaacatcct gtatatgatt atataattcc acaattaaga gatgacttgc 4200 tagtttatct tgtcaggaag ttaaatgatc caagcattgt tacagctatg acattacaat 4260 cacctctgca gcttagattc cgtatgcagg caaaacaaca cctccctgtg tgcaaatata 4320 atgacaattg ggttactttt agaacagttc ttgctgctgc tcatgagtat gcattaaaat 4380 atgtcccaaa tgaaattgat ctggacctct tcaatacttt agtgtcatgt acattttcaa 4440 aagaatttgc atggaaagac tttatcagca acactgagtg tgaagttatc atgtcaagga 4500 aaattcatag agcaaaggtt gcaagggtat ttactgtcaa ggaacgagat caaattatcc 4560 aaaatccaat ttctgtggta attgcttata agtttgctgt tggcacaaat gagataaagg 4620 acgttttgga taaggctaaa ttccctgatt ctttaagtag tgatttgaag ttattgtatg 4680 aaggtgttta tagggaactg gggctggaca taaatgatcc atctgtaatg aaacgagtag 4740 cacctatgtt gtacaagact agtcgatcta ggattgtaat agtgaatggc aatgtcgaag 4800 gaacagcaga gagtatctgc acctactggt taagatcaat ctcttatgtt aagcaaataa 4860 agattatccc gcatgcagaa gtccttaaag ctgtctcaat ttttagtaaa ggggagttta 4920 tacaggaaga taaacagcta gctgctctaa ggctgtgtat agaaatatgg aggtggggta 4980 aatataacag agttgatatc aatgattggt ttgctgcctt atggtttgaa ggtaagactc 5040 tctgggactg gttgtattat ttccagcgga aaggtgtgcc tcttgtagat cctgaaatac 5100 aatgtgctgg gctaatgatg tatgatctat taagagatat gacatgtttg cagatgcatg 5160 caaataggag agcatattct gggaagcaat atgatgcata ttgcatgcaa acatataatg 5220 aggaaacaaa actttatgaa ggtgatttaa gagttgtgtt taattttgga atagattgtg 5280 caagacttga aatcttttgg gaaaaacaga cttatatcct tgaaacatct atcactagta 5340 aaccggttct tcgagtttta atgcaagaag tgtctactga attgcaacgg tgtggtttaa 5400 aatttgatac aatacagagt ataggattca aatcagttgt tttgtttaag acagattcag 5460 gatttgaatg ggggaaacca aatgtacctt gcattatttt taagaattgt gctttacgcc 5520 cgaaccttag aaataagcaa gtattaaaca aggaatttat tattactatt cttgataatg 5580 gttttaaggc aattgcccag caagacttag atagtaatcg gttccagttg gcacatgcat 5640 accataactt gcgtgatata aggtatcagg cacttgaaac agtaaataca gtaaacttta 5700 ctgttgatgg gaaaatttta tatctaaatc caatcattgc tgcaggtcta atcgagaact 5760 tcatgaaggg cctacctgca gtcatccccc cacaggcata tagccttatt atgaaaaaag 5820 caaaaattac tgtagaccta ttcatgttta ataagctttt gggccttata aaccctgaaa 5880 atacatttaa tatggatggt attgaaagtg atgatccaga atatagtact gtaactacac 5940 tttctgtcaa ggattgggca gaggaaaaag atattgaaga tgcggaggtg gaagatgatg 6000 agtatgtcat tgatttaaat gatattgatt ttgataaggt tgacactctt gctgacatcc 6060 agcatttttt gcaggatgaa tcagcataca ctgcggacct tgtaattgat actgaggcga 6120 ctgaatcaaa gcgagtgcgt ggtattgtaa aattgctaga acctattaag ttaattaaga 6180 gttgggtttc gaagggtcta gcaatagaaa agatatatga tcctttggct gttatactcg 6240 ttactcggta tttttctaag caatactcct tttcaaaagt accattagct cagcttgacc 6300 cgtataattt aaccgaactt gagagcattg ttagaggatg gggagaatta gtttgtgatc 6360 agttttatga gttagaccag caagctcatg cctttataca aagaacaaat aaagcgccgg 6420 aagacctcac acctgattca cttttttcat ttagacatgc tgagctatta ttctcaagac 6480 tcttcttgcc tgatactgtt tctgtttttt attaaagtta ttctctaatt tcttcatctt 6540 ctttattttc tagttgtgta tcccggagca tactactact a 6581 //