ID DQ822073; SV 1; circular; genomic DNA; STD; VRL; 7261 BP. XX AC DQ822073; XX DT 01-FEB-2007 (Rel. 90, Created) DT 29-SEP-2017 (Rel. 134, Last updated, Version 3) XX DE Dioscorea bacilliform SN virus clone B39-4, complete genome. XX KW . XX OS Dioscorea bacilliform SN virus OC Viruses; Ortervirales; Caulimoviridae; Badnavirus. XX RN [1] RP 1-7261 RX DOI; 10.1007/s00705-006-0888-7. RX PUBMED; 17195956. RA Seal S., Muller E.; RT "Molecular analysis of a full-length sequence of a new yam badnavirus from RT Dioscorea sansibarensis"; RL Arch. Virol. 152(4):819-825(2007). XX RN [2] RP 1-7261 RA Seal S., Muller E.; RT ; RL Submitted (26-JUN-2006) to the INSDC. RL UMR BGPI, CIRAD, Campus International de Baillarguet, Montpellier 34398, RL France XX DR MD5; 6be58a4c618683261e9638cb306f2d51. DR EuropePMC; PMC4974523; 27399761. XX FH Key Location/Qualifiers FH FT source 1..7261 FT /organism="Dioscorea bacilliform SN virus" FT /host="Dioscorea sansibarensis" FT /mol_type="genomic DNA" FT /country="Benin" FT /clone="B39-4" FT /db_xref="taxon:1755696" FT CDS 441..872 FT /codon_start=1 FT /product="ORF1 protein" FT /db_xref="InterPro:IPR010746" FT /db_xref="UniProtKB/TrEMBL:A2T395" FT /protein_id="ABI47981.1" FT /translation="MNRSIDLEGSLKDYLDRSTEPEYLDLYIVEKPTNKQLANNLCYLN FT HQAKLLSRVSLKHFFKLQEEIQELKTENQVLRKHLVNLTKEVVENRPLTEKKVQELVLR FT IIEQPKEIEQQAVRLTLDLQKKLDRVEAILSRLEGAVLL" FT CDS 869..1249 FT /codon_start=1 FT /product="ORF2 protein" FT /db_xref="UniProtKB/TrEMBL:A2T396" FT /protein_id="ABI47982.1" FT /translation="MSLTSESKEYQLAIKATEAIEPPAVGYTRPADYKGLATAIASIQK FT QNNTLIQLFTQLFTQMSQLQTEVRSLRIEQGSSAQTDQLLDQVITKLGKLSIQDKLPEK FT KGKLLVHKDPVIIYNEEKAKIQ" FT CDS 1246..6909 FT /codon_start=1 FT /product="ORF3 protein" FT /note="contains motifs for putative movement protein, FT capsid protein, aspartyl protease, reverse transcriptase FT and ribonuclease H" FT /db_xref="GOA:A2T397" FT /db_xref="InterPro:IPR000477" FT /db_xref="InterPro:IPR001878" FT /db_xref="InterPro:IPR002156" FT /db_xref="InterPro:IPR008181" FT /db_xref="InterPro:IPR018061" FT /db_xref="InterPro:IPR021109" FT /db_xref="InterPro:IPR029054" FT /db_xref="InterPro:IPR033704" FT /db_xref="InterPro:IPR036157" FT /db_xref="InterPro:IPR036875" FT /db_xref="InterPro:IPR041373" FT /db_xref="UniProtKB/TrEMBL:A2T397" FT /protein_id="ABI47983.1" FT /translation="MSRTATQEVSTSQRQFEDQIRDYRLGARRRYNLRQGLNKFKNVLT FT LGTYYAPTLEQQVDPERTLQLSAIKRASMIPAEVLYHARPDTVNHKVYMHWSEEADLIV FT NNQHDSTFIRPESYLELRKANMQFIHIGLMQVRIQVLHRHEAGTMALIVFRDCSWKGRR FT STIARMEVDLTKGSQLVYIAPNITKKLTDFYNNIQVSILTKGYDDYQNSEANLLITKGM FT IGRLSNTSNVGFAYTVDGVAEYFITHGVQALKGMPMTTDDLQGTLWNIKPSRIIVPSQP FT TQAEDRELADGSVSMRFGAYKAAPALMSSEEFDSDENQVINVLTTTVSSLLIKLMHRDA FT IIPQRITDGSVGYDLAACEDVVIQPRRPTLVKTGIAIEVPAGTYAQLYLKSSFALKTGL FT QITGGVVDPDYRGELQIILINNTFTCVPILKGTFVAQIVLHQVATPAVQETTTLTPTVR FT GTRGFGTLTAEASNMITKVRVEERPVNPVPTPTDHMEEDDEDAEAYGDYLSYLSSRSFS FT REGGEKSREVEAEADDDEDLYFRPSPARVTFSDDPFSEDPTIATIRESGDASQPIFDES FT DDNEDHELIQELVSLEADFDYPQLRQLEDCVIAASSAVSNYTPPEDTTMNPPTYPPARI FT DQAGPSHSGPSYSVPSGTRFKPMNYSANLQLPSAQQTTGAMFYMPLELDKFDEVFSRWE FT SITKNITSQHSFISGREKADFIENLLGETEKLTWIQWRTTFNAEFDSLIAAADGREGTQ FT NIISQIRTIFSLEDPFRGSTKIQEDAYRDLERISCKDVQDIIPFMNEYMRIAAKTGRLF FT ISSELSEKFWMKLPGDLGKTIKDSFDKTYVGNTVGVHPRILFTYKYLQEECKKAALSRS FT LKNLQFCSKIPIPGYYKGREKKYGVRKSTTYKGKPHDSHVRIERRKHLIRSKKCKCFLC FT GAEGHFARECPNDKRNVKRIAIFEGMEIPEDCEIVSVQEGDELSDSIFSVSEGEEVLQS FT LNPFIQQNLLYIREEDGKHFLGGGGWRAAVQVTPQEHDCHHQWEYYILNTGLCKFCKRD FT ITQRWHAKCMHCNLVTCGFCSQHYLDLEIPCQREEVQVYNPQRLLQEQQNYIQVCEVEI FT EKLKESVKAANKIAEDKIMAASIRHAVELEELRKQLQAIKLDKERLELENPDLKKILEE FT FEQVNVLICDGREKSERIASIKERRNGLYNLMVQLEIPGAAPIQVNAILDTGATTCCIN FT EEGLPKAILEANTFEVKFTGANSEMVARKKLKGGIMKIGDNQFRIPYTFAFPLKLGGGE FT QLIIGCNFIRAMNGGVRIEGDTVTFYKNVTTIQTQQQVPKLLALEELEMDEDEYIELQQ FT SISSIEPNNYFSNKLSQVFQELKAAGYIGDDPLKFWSKNQVVCELNIINPDLTIQDKPL FT KHVTPAMEETFRKHIDALLKLKVIRASKSRHRTTAFIVYSGTTVDPVTGKENKGKERMV FT FNYKRLNDNTEKDQYSLPGINTILKRVGQSKIYSKFDLKSGFHQVAMAPQSVEWTAFLA FT PGGLYEWLVMPFGLKNAPAVFQRKMDNVFRGTEEFIAVYIDDILVFSETEEEHLKHLRI FT LLQICQQHGLVLSPTKMKIGTKTIEFLGAVIGNRKIKLQEHIIKKIADFSDDELKTTKG FT LRSWLGILNYARAYMPNMGRILGPLYSKVSPNGEKRLNAEDWRLIREVRTTIRALPDLE FT LPPADSFIVIEADGCMEGWGGVCKWKKLKKDFRRNERVCAYASGKFDPPKSTIDAELFA FT VMNSMDKFKIHYLDRKELLIRSDCQALISFYNKSSENKPSRVRWIAFNDFVTGLGIDVT FT FEHIDGKDNQLADSLSRLVTSLVRHEGKWQQQRKALVIIEEMMQKALSKEIRSQVAHQI FT SALLKIIDKGKSI" XX SQ Sequence 7261 BP; 2327 A; 1487 C; 1640 G; 1807 T; 0 other; tggtatcaga gcttggtttg cttatttttg tttaatggct aactaaatat cgaaggtatt 60 tcaggtgaag gaaactgcct aaggtgtcaa attaagtttc ctgctgatct ttgaaattca 120 taaattcatg attattataa cgactgcata agtttattac tgagttttgg tatgggtgtt 180 gatttttaga ttattactgt atgtgttaat gggtgtttgc tcagcaagct gttagatctt 240 aggtgcaaaa gacaagggca ctatatcccg tcaggcgagt ggccgtttag ggtgaacccc 300 caaggtgagc actgaaggat cgaagcggta agtgaaagct tgcggtacct taatacatat 360 cagtaagatc gaaaaagtcg gcggtaccta ccatcttagt agggaattta tttggttttt 420 ataattttct atgagttttc atgaatagat caatagatct agaagggagc ttaaaggatt 480 atcttgacag gagtactgaa cctgaatacc ttgaccttta tattgttgaa aagcctacaa 540 acaagcagtt agcaaataac ttgtgttatt tgaaccacca agctaagtta ctctctcgtg 600 tttctctaaa acatttcttc aagttacagg aagaaatcca ggagttgaag actgagaatc 660 aagttctcag aaagcatttg gtgaacctca ccaaagaagt tgttgaaaac agacctctta 720 ctgagaagaa ggtccaagag ctcgtgctca gaatcattga acaaccgaag gaaatcgagc 780 aacaggctgt gcgcctaacg cttgatttac agaagaagct tgatagagtt gaagccatcc 840 tatcaagact tgaaggagca gtgcttttat gagcctgacc agcgagtcaa aagaatatca 900 gttggccatc aaagcaactg aggcgattga accaccagct gttggttaca caaggccagc 960 agactacaaa gggcttgcaa cagcaattgc aagtatccag aaacagaaca acacactcat 1020 ccagttgttc acacagctat tcactcagat gtcacagctc cagacggaag ttcggtctct 1080 aaggattgaa cagggctcat ctgcccagac tgatcaatta cttgaccagg taatcactaa 1140 acttggcaag ttatctatac aggacaagct accggaaaag aagggtaaac ttttggtgca 1200 taaagatccc gtcatcatct ataacgaaga aaaagccaag atacaatgag tcgaacagca 1260 actcaagaag tctcgacctc tcaacgacaa tttgaagatc aaatcagaga ctacagactt 1320 ggcgcaagac ggcggtacaa tctaagacag ggattgaaca agttcaaaaa tgttctaact 1380 cttggaacat actatgcacc tactcttgaa caacaggtcg acccagagag gactctgcag 1440 ctctctgcta tcaaaagagc ttccatgata cctgctgagg tattatatca tgctagacca 1500 gatactgtca atcacaaggt ctatatgcac tggtcggagg aagctgacct gatcgtgaac 1560 aatcaacatg actcaacatt catcagaccg gagtcatact tagaattgcg caaggccaac 1620 atgcagttca tccatatcgg ccttatgcaa gtcagaatac aagtgctaca ccgacatgaa 1680 gcaggcacta tggcacttat cgtattcagg gattgttctt ggaaaggaag gcgatctaca 1740 atcgcccgaa tggaggttga tctcacaaag gggagtcaat tggtctatat tgctcctaat 1800 attacaaaga agctcactga tttctacaac aacatccaag tatctatcct caccaaagga 1860 tatgacgact atcaaaacag tgaagcgaac ctcctcatca ccaaaggtat gattggacga 1920 ttgtccaata cttctaatgt tggttttgcc tatacagtgg atggagtagc agaatacttc 1980 atcactcatg gagtccaggc attgaaagga atgccaatga caaccgacga cctccagggc 2040 acactgtgga acattaaacc ttcaagaatc attgttccat cccaaccaac acaggcagaa 2100 gatagggaac tggctgatgg ttccgtgtct atgcgattcg gtgcatacaa agctgcacca 2160 gctctcatgt catctgaaga gtttgattca gatgaaaatc aagtaatcaa tgttcttact 2220 actactgttt ccagtttact cattaaattg atgcacaggg atgcaattat cccacaaaga 2280 ataaccgatg gatcggtcgg ttatgatctg gcggcctgcg aagatgtggt gatccaacca 2340 agaagaccaa ccttggtcaa gacaggcatc gcaattgaag ttcctgctgg aacttacgcc 2400 cagctttatc tcaaatccag ttttgctctc aagactggcc tgcaaattac tggcggcgtg 2460 gtagacccag actaccgagg tgaattgcaa atcatactga tcaataacac attcacctgt 2520 gtcccaatcc ttaaggggac gtttgtggct caaattgttc tacatcaagt agccacacct 2580 gctgtacaag agactaccac tctcacacca actgtacgag gcacaagggg ttttggaacc 2640 cttactgctg aagcctccaa catgattaca aaagtgcggg tagaggaaag gcctgtcaat 2700 cctgttccta cacccactga tcacatggaa gaagacgatg aagatgctga agcatacggt 2760 gattatttat cttacttatc atcacgctct ttttccaggg aggggggaga gaaatcccga 2820 gaagtcgagg ccgaagccga cgacgacgaa gatctttatt ttcggccttc tccagcaaga 2880 gtgactttct ctgatgatcc tttttctgag gatcctacaa ttgccacaat tagagaaagt 2940 ggtgatgcct cacaaccaat ttttgatgag agtgatgata atgaagatca tgagctcatt 3000 caagaactgg tttcactaga agctgatttt gattatcccc agcttcgaca gcttgaagac 3060 tgcgtcatag cagcatcatc ggcggtgtct aactacacac caccagagga tacgacaatg 3120 aatccaccta cgtatccacc agcaaggatc gatcaagccg gtccttcaca ctctggtccc 3180 tcatattctg taccatccgg gacaaggttc aagccgatga actactctgc aaatctacag 3240 ttgccatctg cgcaacagac aacaggggcg atgttttata tgcccttgga gctcgacaag 3300 ttcgatgaag tattttccag gtgggaaagt attacaaaga acattacatc acaacattcc 3360 tttatttcag gtcgagagaa ggcagatttc attgaaaatc tgttaggaga aactgaaaaa 3420 ctcacgtgga tacaatggcg aacaacattc aatgctgagt tcgacagttt aattgcagca 3480 gctgatggtc gagaaggtac acagaacatt atttctcaaa ttaggaccat cttttctctt 3540 gaagacccat ttcgaggatc tacaaagatt caagaggatg cttatagaga tttggaaaga 3600 atctcatgca aggatgtcca agacattata ccattcatga acgaatacat gcgaattgct 3660 gcaaagactg gacgtctgtt catctcatcg gagctttctg aaaagttctg gatgaagctt 3720 cccggagatc ttggcaagac tatcaaggat agttttgata aaacttatgt gggtaacact 3780 gttggagtac acccacgaat tctttttact tacaaatatt tacaagaaga atgcaagaag 3840 gcggccctca gcagatcact gaagaatctg caattctgca gcaaaatacc tattccaggg 3900 tattacaagg gcagagaaaa gaagtacggc gtgaggaagt cgactaccta taaaggtaaa 3960 ccacatgact ctcatgttcg tattgaacgc aggaagcatc taataaggtc caagaagtgc 4020 aaatgcttct tatgtggggc tgaaggacat ttcgcaagag aatgtccaaa tgataaaaga 4080 aacgtcaaaa gaatcgcaat attcgaaggc atggagatcc cagaagactg tgaaattgta 4140 tcagtacaag aaggggatga gcttagcgat tcaatcttct cagtttctga aggagaagag 4200 gtactgcaat ctctcaatcc ttttattcag cagaacctac tctatatcag agaagaagac 4260 ggcaaacact tccttggagg aggaggatgg cgagcagcag tgcaagtcac gccacaggag 4320 catgactgtc atcatcaatg ggagtattat atcctgaaca ctggcttatg caaattttgc 4380 aagagggata ttacccaacg atggcacgcc aagtgcatgc actgcaacct ggtgacatgt 4440 ggtttctgtt ctcaacacta cctggacttg gaaattcctt gtcaaagaga ggaagtacag 4500 gtatataatc ctcaacgact actacaggaa caacagaact acatacaggt ctgtgaagtg 4560 gagatagaga agctgaagga gtcagtaaaa gcagctaaca aaatagctga agacaaaatc 4620 atggcagcct ctatcagaca tgcagtggag ctcgaggagc tcagaaaaca acttcaagcc 4680 atcaaactcg acaaagaacg actggagttg gagaaccccg acctgaagaa aattctcgaa 4740 gaatttgagc aggtaaatgt tcttatctgt gatggcaggg agaagagtga acggattgct 4800 tcgatcaagg agaggcgtaa tgggttgtac aacctcatgg tacaactaga gattcccggc 4860 gccgcaccta tccaagtcaa tgcaatcctt gacacaggtg caacgacatg ttgcataaat 4920 gaagaagggc taccaaaggc gatcctagaa gccaatactt ttgaagtaaa gttcacagga 4980 gcaaattcag agatggtggc caggaagaag cttaagggag gaatcatgaa gataggggat 5040 aatcaattca gaattcccta cacatttgca ttccctttga agcttggagg tggtgagcaa 5100 ctaatcattg gttgcaattt tatcagagcc atgaatggag gagttcggat tgaaggtgac 5160 actgtaacct tctacaaaaa tgttacaaca atccaaactc aacagcaagt tccaaagcta 5220 ctagcacttg aagaactaga gatggacgaa gatgaataca ttgagctaca acagagcatc 5280 agttccatcg agccgaacaa ctatttctct aacaaattgt ctcaagtgtt tcaggaacta 5340 aaggctgctg gctatattgg ggatgatcct ttgaagttct ggtcaaagaa tcaagtggtt 5400 tgtgaactca acattataaa tcctgatctc acaatacagg ataaaccact gaagcatgta 5460 accccagcca tggaggaaac ttttcggaag cacattgatg ctttattgaa gctcaaggtg 5520 atccgagcaa gcaaaagtag acatcgcaca accgcgttca ttgtctactc aggtacaact 5580 gttgatccag tcacaggaaa ggagaacaaa ggaaaggaga ggatggtctt caactacaaa 5640 agactgaatg acaacacaga gaaagaccaa tatagccttc cagggatcaa cacaattctg 5700 aagagagtcg gtcaaagcaa aatatattca aaatttgact taaagagcgg ctttcatcaa 5760 gtggcaatgg cgccacaatc agttgaatgg acggcgtttc tagcgccagg aggactttac 5820 gaatggttgg tgatgccatt cggactgaag aatgcaccag cagtgttcca gaggaagatg 5880 gacaacgtct tccgaggtac tgaagaattt attgctgtat acattgatga tatactggtg 5940 ttttctgaaa cagaagagga gcatttgaag catctgagga tactgcttca aatctgtcaa 6000 caacacgggc ttgttcttag cccaaccaaa atgaagatag gaactaaaac aatcgagttc 6060 ctaggtgcag tgataggcaa caggaagata aagcttcagg agcacatcat caagaagatt 6120 gcggatttta gcgatgatga actgaagaca actaaaggcc tacgatcatg gttaggaatt 6180 cttaattatg ctcgtgcata catgcctaac atgggtcgaa ttctaggtcc actgtactca 6240 aaggtgagtc caaatgggga gaagcgactg aacgctgaag actggagact catcagggaa 6300 gtcagaacca caatcagggc tcttcctgat ctcgaactac caccagcgga cagtttcatc 6360 gtcattgaag ctgacggatg catggaagga tggggtggtg tatgcaagtg gaagaagctc 6420 aagaaagact tccgaaggaa tgaaagggtt tgtgcatacg cgagtggaaa gtttgatcca 6480 ccaaagagca caatcgatgc agaacttttc gcggtaatga atagcatgga taaatttaaa 6540 attcattatc tcgatcgcaa ggaattgtta atcagatcag actgtcaagc gctgatctcg 6600 ttctacaaca aaagttctga aaacaaaccc tcaagggttc gatggattgc cttcaacgac 6660 ttcgttactg gtcttgggat agacgtaacg tttgagcaca ttgacggcaa ggataaccag 6720 ttggcggatt ctctatcgag actggttact tcacttgtaa gacacgaagg caagtggcag 6780 caacagagga aggccttagt cataattgag gagatgatgc agaaggcact cagcaaagag 6840 ataagatcac aggtggcgca tcaaatctct gcactgctga aaattattga caaaggcaaa 6900 agcatttgat tcctgacagc acgtggcatg gtggctgtca ttatcttact ttatttttct 6960 ttatgagttg taaagaggaa ttgagcctcg gggagccgtt cctttagttt aaagagataa 7020 gaaggaatat cattgagtgt ttgatggggc ccaatgagca cccagctcaa ttattcttac 7080 ttagctctta agttttagga gtcttgagcc tctatataag gagctcatat gtatgaagta 7140 agggacatcg agaaataaca tcggaaaata acatctgata gccatttctt ctaaataaaa 7200 atttgtgtgc gataagctct cggggcttaa gcaagatcca tttcttttcc gcttctttcc 7260 t 7261 //