ID DQ787959; SV 1; linear; genomic RNA; STD; VRL; 7360 BP. XX AC DQ787959; XX DT 03-JUL-2006 (Rel. 88, Created) DT 11-SEP-2007 (Rel. 93, Last updated, Version 2) XX DE Grapevine virus A isolate GTR1-1, complete genome. XX KW . XX OS Grapevine virus A OC Viruses; Riboviria; Tymovirales; Betaflexiviridae; Trivirinae; Vitivirus. XX RN [1] RP 1-7360 RX DOI; 10.1111/j.1365-3059.2007.01624.x. RX AGRICOLA; IND43950712. RA Goszczynski D.E.; RT "Single-strand conformation polymorphism (SSCP), cloning and sequencing RT reveal a close association between related molecular variants of Grapevine RT virus A (GVA) and Shiraz disease in South Africa"; RL Plant Pathol. 56(5):755-762(2007). XX RN [2] RP 1-7360 RA Goszczynski D.E., Du Preez J.; RT "Divergent molecular variants of Grapevine virus A"; RL Unpublished. XX RN [3] RP 1-7360 RA Goszczynski D.E., Du Preez J.; RT ; RL Submitted (20-JUN-2006) to the INSDC. RL Virology, Plant Protection Research Institute, Private Bag X134, RL Queenswood, Pretoria 0121, South Africa XX DR MD5; f8647b5cea3511e5dba37f84d13a868a. DR EuropePMC; PMC4661162; 26640751. XX FH Key Location/Qualifiers FH FT source 1..7360 FT /organism="Grapevine virus A" FT /lab_host="Nicotiana benthamiana" FT /isolate="GTR1-1" FT /mol_type="genomic RNA" FT /country="South Africa" FT /note="mechanically transmitted from grapevine cv. Shiraz FT to Nicotiana benthamiana; infected plants exhibit mild vein FT clearing symptoms in leaves acronym: GVA" FT /db_xref="taxon:35288" FT CDS 88..5220 FT /codon_start=1 FT /product="putative replicase" FT /note="ORF1" FT /db_xref="GOA:Q0Z7T8" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR005123" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="InterPro:IPR027450" FT /db_xref="InterPro:IPR037151" FT /db_xref="UniProtKB/TrEMBL:Q0Z7T8" FT /protein_id="ABG37965.1" FT /translation="MSISVSSQRVAASNLFTNGAEEQIKAIKELKSKRLLETELGLDGL FT FDYFIPDTVREILTGYGMEFSVHSFQGHAHPISKMIENHMLYRIAPHYFSDRTLIISCK FT ESKVKRLKISNKNRNFNFTQYNRLVHAKDHHRYENATRDLDVGSLCGVINLEKTCECVF FT IHDEVQYWSLDEMQRFLGSLEHAKRVVYSIVYPAEVDAGFNQSLFPEAYTFDLRDGRLT FT WYPDGKAEGAYTQPVNPWLLGCRKTIDSKSRSWTITKLQTVGAHHIFSAVLGSFLTEDS FT YKYDNFTVINPNDILRGRRGCKPLYLRARMIRPTLLYLCALKKADSNSAVSKLRMLSNR FT EENMDEALFVAQLAKQIKDTGLYDRMGNPSIKSLLSEAFHDIAGNLFTRLFNKPEYDAR FT CLEKFIRACETTEFYIPRRFMERVYRGSSLMVQRVVDWVEDEEANALDEVNLQELCKND FT REPEPYSASVSNGENRRAYVPITRIMRSHALILESAKSVEINRVVVVCSARSLLNLRLF FT LIRLGRFRYMESRGPTDVQDMQEALEDGLLSEEEVEARLFTSQDTESEGSTNEETGHIV FT NESRNDEVGTPRFSKVRELIKEGIFTEQLKGREVAFYSRYSKDYKYAGGHHRSLGWDDA FT LDSLVAELGLDESYDHCLIQRYVKDGAIGFHADDEPCYLPGGSVVTVNLNGEALFEVKE FT NSSGAIKQIHMKDGDVYTMGPGMQQTHKHRVQSLSDGRCSITVRDKTVDYEAQRKEGSS FT EYEEDVADADEGIEYLKRNSANMCSLKAIAEHMQLSIPTVVSIVNGESPQTLKEIESGG FT VSVATLVGLSRTLGFPIALHGDRGFAQTQGDYRKLHLRVGDGHVEPFEGVASSGGLKEA FT LLLSDGVGQGIFRVDKAKADRLAQSFYSGCTGVLLGKYNKGKMHAAELDEPTEVLTSFG FT FAGSGKSHWCQTILRSCDVEKTLIISPRKVLKDDWVGKISKKHKVVTFEVAFMDDFGCK FT AIVIDEIGLLPPGYIDLVISVFHPSTLVLLGDPLQSSYHSKRDNVILEASQEDVFSRIK FT GALPYLCYSHRLPKNCKIFEIECMGGEAEKRITFRSKRGKDEPVICATRAMREMNGSGW FT YTVSETQGLSFKTCMIQLCEHWAKKEDEDVMVAFTRSRGEIAISVDKKLKEVLLRTSKS FT ELLRKILSGETYRRSSIIALVKKHIPEALVVFEENRLASNVDYEERLAGDPYLKSLLSL FT YEDIEEEEVEIEEPVALEPIRTHLPLSEKLNELIPFDLKAKEDREQYTEAGRTEQIDEE FT GYGQWGANPMTHKALYLRHTSDDTATFMMSVKKRLRYRSYEGNRRKYLSCHGIGRQMFS FT VLKETYQWKDIESLPELEKCEKEFMRKRVEKSAALIEQHSGRSDPDWPSNYLKIFLKQQ FT TCTKMEKRGVDAKAGQTIACFAHSVLCRFGPLLRQTEKAFRELLPENVMIYSQKNYMDL FT DKWSKTWVEGMLGTDSDYEAFDRSQDEKILDMEIEVLRFFLWPEEMIQEYETLKLMMGS FT ALGDLAIMRFSGEFGTFFFNTLSNMVFSCMRYHLDKNTPICFAGDDMYSPGVLQVRKDY FT EKTLDELTLKAKVHVSEEPLFCGWRMSPYGIIKEPNLILDRWKIAQRSGNLDLCIVNYA FT IEASFGYRLSEYLYDVNIDVDAQQELIREIVEHKHKLPKKIAGLFSDDECEAHSDGDDD FT FLLNDVGREYRIG" FT CDS 5189..5716 FT /codon_start=1 FT /product="unknown" FT /note="ORF2" FT /db_xref="UniProtKB/TrEMBL:Q0Z7T7" FT /protein_id="ABG37964.1" FT /translation="MMSGESTELVDLLRFGLDRSTLGSGSIESLPLDKCIGLLEGLRSL FT GYSSIDNVLHVLGGGEPDRFQILRVFRSQGVAVSEAYELGLTKSLSFSPRPVSLILEDL FT LDRIARGASFLPVDLGAVNGELVVNFERSRLSVDLYVNNKKVCSRIKYSAGDPKYVQQR FT FSGFKGIITRSS" FT CDS 5664..6500 FT /codon_start=1 FT /product="movement protein" FT /note="ORF3" FT /db_xref="UniProtKB/TrEMBL:Q0Z7T6" FT /protein_id="ABG37963.1" FT /translation="MSNRDSQDSKGSSHALHEIKVFNVKRNTKDLETLNKALHRGDVYE FT TELIEKVFPRRTKKCVIHRELVVKDGRVDCDLDIMDNGLGDVNEEEYPLYHVGCIVVAL FT MPHGKNLTGKVVVELKDTRLKEPSSRISRSFMDMSKPISACADFPGYFISTADLLNGYT FT LHLSVTTTDLDFVDGVHPFSVQLTSIGRFCGEDMKTRYAITEVSKQLHQSILNSEGDGA FT EIPKGVPVQRIPDTLVMPEVYETIKKLGLRTHGSVRKEGGDPSSDRRTRARESGAE" FT CDS 6424..7020 FT /codon_start=1 FT /product="coat protein" FT /note="ORF4" FT /db_xref="GOA:Q0Z7T5" FT /db_xref="InterPro:IPR008879" FT /db_xref="UniProtKB/TrEMBL:Q0Z7T5" FT /protein_id="ABG37962.1" FT /translation="MGQFARRGEIRAVIEELVLARAELSEDTSTGGYDRTMYLNTLFGY FT IALVGTSKKATHYGEVDIVGPNASKKTGLDPRGKINVASMVARMRTLSAAVSEGPVKGA FT TLRQMCEPFAQNAYDFLVVMAELGTYTQLATKMTRSGFKEPQVMFDFASGMDLKTLTLQ FT EATVIQSMHSRLFRTEGAKGVFNAQSSVGEQAVEI" FT CDS 7021..7293 FT /codon_start=1 FT /product="RNA binding protein" FT /note="ORF5" FT /db_xref="InterPro:IPR008891" FT /db_xref="UniProtKB/TrEMBL:Q8QYT2" FT /protein_id="ABG37961.1" FT /translation="MDDPSFLTGRSTYAKRRRARRMNVCKCGAILHNNKDCRSSTISGH FT KLDRLRFVKEGRVALEGETPVYRTWVKWVETEYHINILETSDDEE" XX SQ Sequence 7360 BP; 2101 A; 1473 C; 2095 G; 1691 T; 0 other; cgaatattta atttgattcc catcgattat acgtgaccaa aacttactag cactcaggct 60 ctgcgaagta cctcgaagtc agccagtatg tcgatatcag tttcgtccca acgtgttgca 120 gcatccaacc tgttcacgaa cggagctgag gaacaaatta aggccatcaa ggagttgaaa 180 agcaagcggt tattggagac cgagcttgga ttggacggct tgtttgatta tttcattcca 240 gacacagtca gagaaatact aactggttat ggtatggaat tcagcgtgca ctccttccaa 300 ggacatgctc accccataag caaaatgata gaaaatcaca tgttgtatag aatagcaccc 360 cattatttct cagataggac attgattatt agttgtaaag aaagtaaggt aaagagatta 420 aagatctcca acaagaatag gaattttaat ttcactcaat ataatagatt ggtgcatgca 480 aaggatcacc acagatatga gaatgccacc agagatttag acgtaggctc gctgtgtggc 540 gtaataaatc tggagaaaac ttgtgaatgc gtgttcatcc acgacgaggt ccaatattgg 600 agcttagatg agatgcaaag gtttctaggg tcgctcgagc atgcaaagag ggtggtctat 660 agcattgtgt acccagcaga ggtggacgct ggtttcaacc aaagtctgtt cccagaggct 720 tacacgtttg atctgcgaga tgggaggctt acttggtatc cagatggtaa ggcagaaggg 780 gcgtacacac aaccggtaaa cccttggcta ctagggtgcc gcaagactat agactcaaag 840 tctaggagct ggactatcac aaagctgcaa accgtcgggg cgcaccacat cttcagtgca 900 gtcctgggta gcttcctaac agaggactca tacaagtatg acaacttcac cgtcatcaac 960 ccgaatgaca tactcagggg gcgaagaggg tgcaagcctt tgtatttacg agccaggatg 1020 atcagaccca ctctgttata cttgtgcgct ctcaagaaag ctgattcgaa ctcagcagtg 1080 tccaagctaa gaatgctaag caacagggag gagaacatgg acgaggcact attcgtggcc 1140 cagttagcga aacagatcaa ggatactggg ttgtacgaca ggatgggtaa cccaagcatt 1200 aaaagcctgc tctccgaggc attccatgac atcgcgggca accttttcac taggctcttc 1260 aataaaccag agtatgatgc tcggtgcctg gagaaattca tcagggcttg tgagaccaca 1320 gagttctata tccctaggag attcatggag agggtgtaca gaggaagcag cctgatggtg 1380 cagagagtgg tggactgggt ggaggacgag gaagccaatg ccttagatga agtaaacctc 1440 caagaattgt gcaaaaacga ccgagagcca gaaccataca gtgcgtcggt gtcgaacggc 1500 gagaacagga gagcatatgt ccctatcact agaatcatga ggtcacacgc actaatcctg 1560 gagagcgcga agtctgtgga aatcaaccga gttgttgtgg tatgctccgc acgctctttg 1620 ttgaaccttc gtttgttcct aattcgcctg ggtcgattca gatacatgga gagcaggggg 1680 cctaccgacg tccaagatat gcaagaggct ttggaggacg ggcttctgag cgaggaggag 1740 gtggaggcaa gactcttcac tagccaggat acagagagtg aagggagtac caatgaggag 1800 acggggcaca tagtcaatga atctagaaat gatgaggtgg gtactcctcg tttctcgaaa 1860 gtgcgggagt tgatcaagga agggatcttc acggagcagt tgaaggggag agaggtggct 1920 ttctatagcc gttacagcaa ggattataag tatgcagggg gtcaccatcg ctccctgggc 1980 tgggatgacg ccctcgattc gctcgtagcg gagctgggtt tagatgaaag ctatgatcac 2040 tgcctgatcc agagatacgt gaaagatggg gcaataggtt tccatgccga tgacgagccc 2100 tgctacctgc caggtggtag cgtagtcacc gtgaatctga acggtgaagc tctctttgag 2160 gttaaggaga actcgagtgg ggccataaag caaatccaca tgaaggacgg ggatgtttat 2220 acaatgggac ccggaatgca gcaaacccac aagcacagag tccaatcgct cagtgacggg 2280 cgatgcagta tcaccgtccg tgataagacc gtggactatg aagcacagag aaaggagggc 2340 tcttcagaat atgaagagga tgtggccgat gcagatgaag gaattgaata cctcaagagg 2400 aattcggcaa atatgtgctc actgaaagcc atagcggagc acatgcagtt aagcatcccg 2460 acggtggtct cgatcgtaaa cggggagtcc ccccaaacct tgaaggagat cgaatctggt 2520 ggtgtaagtg tggccacact ggtgggcctc tcacgcacac ttggttttcc aatcgctcta 2580 cacggagata ggggatttgc tcagacacaa ggtgattaca ggaagctgca cctgagagtg 2640 ggtgatggac atgtagaacc ctttgaaggg gtggcaagct cgggtggatt aaaggaggcg 2700 ctcctcttga gtgatggggt tggtcaaggt atctttcggg tcgataaggc caaagcagat 2760 agactagctc aaagcttcta cagcgggtgc acaggtgtgc ttctgggaaa gtacaataaa 2820 ggaaagatgc acgcggctga attggatgaa ccaactgaag tattgacttc ctttggtttc 2880 gccgggtccg gaaaaagtca ctggtgtcaa accatactcc ggagttgtga tgtcgagaaa 2940 actttgatta taagtcctag gaaagtgctc aaggacgact gggtaggaaa gatctctaag 3000 aagcacaagg tggtgacctt tgaagtcgca tttatggatg atttcggatg taaggccata 3060 gtcatcgatg agataggact gctcccacca ggttatattg atctggtgat ctcagtattc 3120 cacccaagca ccttagtact actaggggat ccacttcaaa gctcttacca cagcaaaaga 3180 gataatgtga ttctggaggc aagtcaagag gatgtcttca gcaggataaa gggtgcgttg 3240 ccctatctct gctactcaca taggctgccc aagaactgca agatatttga gattgagtgc 3300 atgggagggg aagcagagaa gaggatcaca tttagatcaa agaggggcaa ggatgaacca 3360 gtaatctgcg ccaccagggc tatgagggaa atgaatggat ccggatggta tacggtaagt 3420 gagactcaag gcttaagctt caagacctgc atgatacaat tgtgcgagca ctgggcaaag 3480 aaggaggatg aggatgtaat ggtggccttc actaggtctc gaggggagat cgccattagt 3540 gtggataaaa aactgaaaga ggtgctatta aggacgtcca agagtgagct cctacggaag 3600 attctaagcg gcgagacata cagaagatcc agcatcatcg cactcgtaaa gaagcatatc 3660 cctgaagcct tggttgtgtt tgaggaaaac cgcctagcga gtaatgtgga ttacgaggag 3720 aggctggcag gagaccccta cctcaagtct ctattatccc tttacgagga catcgaggaa 3780 gaggaggtgg aaatcgagga accggtggcc cttgagccga taaggactca cttacctttg 3840 agcgagaagc tgaatgagtt gataccgttt gatttgaagg caaaggaaga cagagagcaa 3900 tacactgagg ctgggcgcac tgagcagata gacgaggagg ggtacgggca atggggggcc 3960 aacccgatga cccacaaggc tttgtatcta aggcatacat cagatgacac agcaaccttc 4020 atgatgtctg tgaagaaacg tttgaggtat agaagctatg aagggaacag gagaaagtac 4080 cttagctgtc atggaattgg gcgccaaatg ttctcagtgc tcaaagagac ttaccagtgg 4140 aaggatatag agtcactgcc agaacttgaa aaatgcgaga aagaatttat gaggaagcgg 4200 gttgaaaaga gcgctgcact gatagaacag cactcaggaa gaagtgaccc tgactggccc 4260 agcaattacc tcaagatctt cctcaaacag cagacctgca caaagatgga aaagagagga 4320 gtggatgcaa aggccggaca gaccatagct tgttttgctc actctgtgct gtgcaggttc 4380 ggaccgttgt tgcgtcaaac ggaaaaagcc ttcagagagc tcctaccaga aaatgtgatg 4440 atctactctc agaaaaacta catggacctg gacaagtggt caaagacatg ggtagagggc 4500 atgctgggga cagattcaga ttacgaggct tttgacagat cccaggatga gaagatactg 4560 gacatggaga tcgaggtgct cagattcttc ctttggcctg aggaaatgat acaggagtat 4620 gaaactctca aactgatgat gggcagcgct ctgggtgatt tggccataat gaggttctcc 4680 ggtgaattcg ggaccttctt cttcaacacc ctgagcaaca tggtgttcag ctgcatgagg 4740 taccacttgg ataaaaacac ccctatctgc ttcgctgggg atgatatgta ctcacctgga 4800 gtactacaag tcaggaagga ctatgagaag actctggatg aattgactct caaggctaag 4860 gttcatgtgt ctgaagaacc cctcttctgt ggctggagga tgagtccgta cgggatcata 4920 aaagagccaa atctgatctt ggataggtgg aagatagcgc aaagatcggg gaatctggat 4980 ctatgcattg tgaattacgc tatcgaggcg agcttcgggt accgtttaag tgagtaccta 5040 tatgatgtga atatcgatgt tgacgctcag caggaactga tcagagagat tgtagagcac 5100 aaacacaaac tcccgaagaa gatagccggg ttgttcagtg atgatgaatg cgaggcccat 5160 agcgacgggg acgatgactt cctgttgaat gatgtcgggc gagagtaccg aattggttga 5220 tctccttcgc ttcggccttg ataggagtac gttaggtagc gggtccatag agtcattacc 5280 tttagataag tgtattgggt tgttagaagg tttgcgtagt ttgggttact cgtcaattga 5340 caacgtgctc cacgtgttgg gagggggtga accagatcgg ttccagatcc ttagggtgtt 5400 ccggagccag ggggtggcag ttagtgaggc gtacgagcta ggcttaacaa aaagtcttag 5460 tttcagccct cgtccagtta gtctgatact ggaggacttg ctagatcgca tagcaagagg 5520 tgcatcattt ctaccggttg atttgggtgc tgtgaacggg gagctagttg tcaatttcga 5580 gcgttctagg ttaagtgtag atctgtatgt taataataag aaggtgtgct caagaataaa 5640 gtactcagca ggggatccca agtatgtcca acagagattc tcaggattca aagggatcat 5700 cacacgctct tcatgagata aaggtcttta atgtgaagcg gaacaccaag gatttggaga 5760 ctctgaacaa ggccctgcac cgcggggatg tttatgagac cgagttgata gaaaaggtgt 5820 tcccaagaag gacaaagaag tgtgtaatac acagagagct ggtggtgaag gatggtaggg 5880 tcgattgtga ccttgatatc atggataatg gacttgggga tgtgaatgag gaggagtatc 5940 cactatacca tgtgggttgt atcgtggtgg cactgatgcc ccatggcaag aatctgactg 6000 gcaaggtggt tgtggagctc aaggacacaa ggctaaaaga gcctagctca cggatatcaa 6060 ggagcttcat ggatatgtcc aaacctataa gtgcctgtgc tgatttccct ggttacttca 6120 taagcaccgc agacttactc aatgggtaca cactccatct ttcagtgacg acgactgatc 6180 tggacttcgt cgatggtgtg cacccgttca gcgtgcagct gacaagcatt gggaggtttt 6240 gcggagagga tatgaagact aggtatgcca tcacggaggt gtcaaagcag ctacaccaga 6300 gcatattgaa ctcagaagga gacggtgctg aaatcccgaa aggggtgcct gttcagcgta 6360 tacctgatac tctagttatg ccagaagtgt atgagacaat aaagaagtta ggtttgagga 6420 ctcatgggtc agttcgcaag gaggggggag atccgagcag tgatagaaga actcgtgctc 6480 gcgagagcgg agctgagtga ggacacgagc acagggggct acgaccgaac aatgtacctg 6540 aatactctct tcgggtacat cgccttggtc gggactagca agaaggcgac tcattatgga 6600 gaggtagata tagtaggacc taatgcgagt aagaagactg gtctagaccc taggggtaaa 6660 ataaacgtgg ctagcatggt agcgcgcatg agaactctca gtgcggctgt aagcgaggga 6720 cctgtcaagg gggcgactct gaggcagatg tgcgaaccgt tcgctcaaaa cgcttacgat 6780 ttcctggttg tcatggctga gttgggtacg tatacgcagt tagcaactaa gatgactagg 6840 tcgggcttca aggagccaca ggttatgttt gactttgcgt cgggcatgga cttgaagacc 6900 ttaactctgc aggaggccac tgttatacaa tccatgcact ctcgtctctt tcgcactgaa 6960 ggggcaaagg gggtgttcaa cgctcagtcc agcgtcgggg aacaagctgt cgagatatag 7020 atggatgacc catcgtttct cacgggtagg tctacttatg ctaaacgtag gagggccagg 7080 cgtatgaatg tgtgtaagtg tggtgctata ttgcacaata ataaagattg taggtctagt 7140 acaatctcgg gtcataaact cgatcgactc cggttcgtaa aagagggaag agtagccctg 7200 gagggcgaga ctcctgttta tcgaacttgg gtcaagtggg tggagaccga gtatcatata 7260 aatatattag aaacctcaga tgatgaggaa taatcatcta tcctagctac agtaaataaa 7320 ctacttaatg gtaaagcaag ctaggttgtc acacggtgac 7360 //