ID DQ785471; SV 1; linear; genomic RNA; STD; VRL; 3048 BP. XX AC DQ785471; XX DT 29-JUL-2006 (Rel. 88, Created) DT 17-AUG-2007 (Rel. 92, Last updated, Version 2) XX DE Cucumber mosaic virus clone pNaRNA2 segment RNA2, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3048 RX DOI; 10.1099/vir.0.82927-0. RX PUBMED; 17698672. RA Du Z.Y., Chen F.F., Liao Q.S., Zhang H.R., Chen Y.F., Chen J.S.; RT "2b ORFs encoded by subgroup IB strains of cucumber mosaic virus induce RT differential virulence on Nicotiana species"; RL J. Gen. Virol. 88(Pt 9):2596-2604(2007). XX RN [2] RP 1-3048 RA Du Z., Chen J., Liao Q., Zhang H.; RT ; RL Submitted (17-JUN-2006) to the INSDC. RL Institute of Bioengineering, Zhejiang Sci-Tech University, No.2 Road RL Xiasha, Hangzhou, Zhejiang 310018, P.R.China XX DR MD5; 19e15e935800d85eba2c6951b7e72e8f. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3048 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="zucchini" FT /lab_host="Nicotiana glutinosa" FT /isolate="Na-CMV" FT /mol_type="genomic RNA" FT /country="China" FT /clone="pNaRNA2" FT /note="subgroup: IB" FT /db_xref="taxon:12305" FT 5'UTR 1..78 FT CDS 79..2655 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2a" FT /db_xref="GOA:Q0PP54" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q0PP54" FT /protein_id="ABG79773.1" FT /translation="MAFPAPAFSLANLLNGSYGVDTPEEVERVRSEQREEAAAACRNYR FT PLPAVDVSESVTEDAHSLRIPDGAPSEEVSVEFVTYGAEDYLEKSDDELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLAPNTSYRTMKCFEDLVAAIYTKSDFYYDDEC FT EADDVQIDISSREVPGYSFEPWSRTSGFEPPPICEACDMIMYQYPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSTLGPFLVPVKCQYEKCPTPTVANPPSLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESTDYSIELDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLSKAVAERFFISYINGNSLASSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKGITSQFSPLFTALFERFQRCLRERIILPVGKISSLEMAGFDVKNKHCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPPVGDPSKFTTLFNMEA FT KVMEPAVPYICSKFLLSDEFGSTFSVPDPLREVQRLGTKKIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSCIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYKELYYSDRRQC FT ELINSFSCVELRIERSSSTKQRKKKDGIERRRSDKRRTPIGSYDGGEEAETKVSQAEST FT GTRSQKSQREGAFKSQTVPLPTVLSSRWFGTDRDVPPCEHGGIVRV" FT CDS 2414..2749 FT /codon_start=1 FT /product="2b protein" FT /note="ORF2b" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q0PP53" FT /protein_id="ABG79774.1" FT /translation="MELSEGAVTNVELQLARMMEAKRLRRRSHKQNRRERGHKSPSERA FT RSNLRLFRFLPFYQVDGSELIEMYHHVSMVGLSESEAPCFTLPAEEDHDFDDTDWFAGN FT GWAEGSL" FT 3'UTR 2750..3048 XX SQ Sequence 3048 BP; 747 A; 685 C; 733 G; 883 T; 0 other; gtttatttac aagagcgtac ggttcaaccc ctgcctcctc tgtaagactc cctagacttt 60 ctagtttcta tctttcctat ggctttccct gcccccgctt tctcactagc caatcttttg 120 aacggtagtt acggtgtcga cactcccgag gaagtggaac gcgtgcgatc tgagcaacgc 180 gaagaggctg ctgcggcctg tcgtaattac aggcccctac ccgctgtgga tgtcagcgag 240 agtgtcacag aggatgcgca ttccctccga attccagacg gagctccctc cgaagaggtg 300 tctgtagagt ttgttactta tggtgctgaa gattaccttg aaaaatctga tgatgagctc 360 cttgtcgctt ttgagacgat ggtcaaaccc atgcgtatcg gacaattgtg gtgccctgcg 420 tttaataaat gttcttttat ttccagcatt gctatggcca gagctttgtt gttggcgcca 480 aatacatcct accgaaccat gaagtgtttt gaggacctgg tcgcggctat ttacactaaa 540 tccgatttct attacgatga tgagtgtgaa gccgacgacg ttcagataga tatctcgtct 600 cgcgaagtac ccggctattc tttcgagccg tggtcccgaa cgtctggatt tgaaccaccg 660 cctatctgcg aggcgtgtga catgatcatg taccagtacc cgtgttttga ttttaatgct 720 ttaaagaaat cgtgcgctga gaggacattc gctgatgatt atgttatcga aggtttagat 780 ggtgttgtcg acaatgcgac tctgttgtcg actttaggtc cattcttggt gcctgtgaaa 840 tgtcagtatg agaaatgtcc aacacccacc gttgcgaatc ctccgagtct taatcgtgct 900 actgatcgtg ttgatatcaa tttagttcaa tccatctgtg actcgactct gcccacacat 960 agtaactacg acgattcttt tcatcaagta tttgtcgaga gtacagacta ttctattgaa 1020 ctggatcatg ttagacttcg ccagtctgat cttattgcaa aaattccaga ttcagggcat 1080 atgataccgg ttttgaacac cgggagtggt cacaagagag taggtacaac gaaggaggtc 1140 cttacagcta tcaagaaacg taatgctgac gttccagagc taggtgattc cgttaatctg 1200 tccagattga gcaaggctgt ggctgagaga ttcttcattt catatatcaa tggtaactct 1260 ctagcgtcca gcaactttgt taatgtcgtt agtaacttcc acgattacat ggaaaaatgg 1320 aagtcctcag gtctttcgta tgatgatctt ccggatcttc atgctgagaa tttgcagttt 1380 tatgatcaca tgataaaatc tgatgtgaaa cctgtggtga gcgacacact caacatcgac 1440 agaccggttc cggctactat aacgtatcat aagaagggta taacctccca gttctcaccg 1500 ttgtttactg cgctatttga gcgtttccag agatgccttc gagaacgcat tattcttcct 1560 gttggaaaga tttcatccct tgagatggca ggatttgatg ttaagaacaa gcattgtctc 1620 gagattgatt tgtccaaatt cgacaagtct caaggtgaat tccatttaat gatccaggaa 1680 catattttga atggtctagg gtgcccagct ccgataacta agtggtggtg tgatttccac 1740 agattctctt acattagaga ccgtagagct ggcgttggta tgcctatcag tttccagaga 1800 cgaactggtg atgcattcac ctatttcggt aacaccattg tcaccatggc tgagtttgcg 1860 tggtgttatg acaccgacca attcgaaaag cttttattct caggcgatga ttctctagga 1920 ttttcagtac ttccccctgt tggtgatccg agtaaattca caactctttt caacatggaa 1980 gctaaggtga tggagcccgc agtaccatat atttgttcga agttcctgct ctctgacgag 2040 ttcggtagca ccttttccgt tccagatcca ttgcgcgagg tccagcggtt aggcacgaag 2100 aaaatcccct attcagacaa tgatgaattc ctgtttgctc acttcatgag ctttgttgat 2160 cgattgaagt ttttggaccg aatgactcag tcttgtatcg atcagctttc cctctttttc 2220 gagttgaaat acaggaagtc tggggctgag gctgccttaa tgttaggcgc ctttaagaaa 2280 tataccgcta attttcagtc ctataaagaa ctctactatt cagatcgtcg tcagtgcgaa 2340 ttgatcaatt cgtttagttg tgtagagtta aggattgagc gttcgagttc caccaagcag 2400 cgaaagaaga aagatggaat tgagcgaagg cgcagtgaca aacgtcgaac tccaattggc 2460 tcgtatgatg gaggcgaaga ggctgagacg aaggtctcac aagcagaatc gacgggaacg 2520 aggtcacaaa agtcccagcg agagggcgcg ttcaaatctc agactgttcc gcttcctacc 2580 gttctatcaa gtagatggtt cggaactgat agagatgtac caccatgtga gcatggtggg 2640 attgtccgag tctgaggccc cttgttttac gttgccagcg gaagaagacc atgatttcga 2700 cgatacggat tggttcgctg gtaacgggtg ggcggaaggg tcgctttgaa cctccccttc 2760 cttaactccc tccggttctc tgaggcggga gctgagttgg cagtattgct acaaactgtc 2820 tgaagtcact aaacgtttta cggtgaacgg gttgtccatc cagctaacgg ctaaaatggt 2880 cagtcgtgga gaaattcacg ccgaaggctt acaagtcttc gaggcacctt tgaaaccatc 2940 tcctaggttt cttcggaagg acttcggtcc gtgtacttct agcacactgt gctagtttca 3000 gggtacgggt gcccctccgc tttgcggggg tcctctaaaa ggagacca 3048 //