ID DQ785469; SV 1; linear; genomic RNA; STD; VRL; 3044 BP. XX AC DQ785469; XX DT 29-JUL-2006 (Rel. 88, Created) DT 17-AUG-2007 (Rel. 92, Last updated, Version 2) XX DE Cucumber mosaic virus clone pRad35RNA2 segment RNA2, complete sequence. XX KW . XX OS Cucumber mosaic virus (cucumber mosaic cucumovirus) OC Viruses; Riboviria; Bromoviridae; Cucumovirus. XX RN [1] RP 1-3044 RX DOI; 10.1099/vir.0.82927-0. RX PUBMED; 17698672. RA Du Z.Y., Chen F.F., Liao Q.S., Zhang H.R., Chen Y.F., Chen J.S.; RT "2b ORFs encoded by subgroup IB strains of cucumber mosaic virus induce RT differential virulence on Nicotiana species"; RL J. Gen. Virol. 88(Pt 9):2596-2604(2007). XX RN [2] RP 1-3044 RA Du Z., Chen J., Liao Q., Zhang H.; RT ; RL Submitted (17-JUN-2006) to the INSDC. RL Institute of Bioengineering, Zhejiang Sci-Tech University, No.2 Road RL Xiasha, Hangzhou, Zhejiang 310018, P.R.China XX DR MD5; f265ebcffcd7929d1b44cfbfde6d374b. DR RFAM; RF01084; TLS-PK3. XX FH Key Location/Qualifiers FH FT source 1..3044 FT /organism="Cucumber mosaic virus" FT /segment="RNA2" FT /host="radish" FT /lab_host="Nicotiana glutinosa" FT /isolate="Rad35-CMV" FT /mol_type="genomic RNA" FT /country="China" FT /clone="pRad35RNA2" FT /db_xref="taxon:12305" FT 5'UTR 1..77 FT CDS 78..2654 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2a" FT /db_xref="GOA:Q0PP58" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR007094" FT /db_xref="UniProtKB/TrEMBL:Q0PP58" FT /protein_id="ABG79769.1" FT /translation="MAFPAPAFSLANLLNGTYGVDTPEEVERVRSEQHEEAAAACRNYK FT PLPAVDVIESVTEDAHSLRTPDGAPSEEVSVELVTYGAEDYLEKSDDELLVAFETMVKP FT MRIGQLWCPAFNKCSFISSIAMARALLLVPSTSNRTMKCFEDLVAAIYTKSDFYYDDEC FT EADDIQINVSSRDVPGYSFEPWSRTSGFEPPPICEACDMIMYQCPCFDFNALKKSCAER FT TFADDYVIEGLDGVVDNATLLSNLGPFLVPVKCQYEKCPTPTVAIPPSLNRATDRVDIN FT LVQSICDSTLPTHSNYDDSFHQVFVESADYSIDLDHVRLRQSDLIAKIPDSGHMIPVLN FT TGSGHKRVGTTKEVLTAIKKRNADVPELGDSVNLSRLRKVVAERFFISYINGNSLATSN FT FVNVVSNFHDYMEKWKSSGLSYDDLPDLHAENLQFYDHMIKSDVKPVVSDTLNIDRPVP FT ATITYHKKGITPQFSPLFTALFERFQRCLRERIILPVGKISSLEMSGFDVKNKHCLEID FT LSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRVRRAGVGMPISFQRRT FT GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPPVGDPSKFTTLFNMEA FT KVVEPAVPYICSKFLLSDEFGNTFSVPDPLREVQRLGTKRIPYSDNDEFLFAHFMSFVD FT RLKFLDRMTQSRIDQLSLFFELKYRKSGAEAALMLGAFKKYTANFQSYKELYFSDRRQC FT ELINSFSCVELRIERSSFIKQRKKKDGIERRRNDKRRTPTGPHGGGEETETKVSQEEST FT GTMLQKSQREGAFKSQTVPLPTVLSSRWFGTDRDVPPRERGGIVRV" FT CDS 2413..2748 FT /codon_start=1 FT /product="2b protein" FT /note="ORF2b" FT /db_xref="InterPro:IPR004946" FT /db_xref="UniProtKB/TrEMBL:Q0PP57" FT /protein_id="ABG79770.1" FT /translation="MELNEGAMTNVELQLARMVEAKRQRRRSHKKNRRERCYKSPSERA FT RSNLRLFRFPPFYQVDGSELIEMYRRVNVAELSESEAPCFTLPAEDDHDFDDTDWFAGN FT EWAEGTF" FT 3'UTR 2749..3044 XX SQ Sequence 3044 BP; 752 A; 681 C; 721 G; 890 T; 0 other; gtttatttac agagcgtacg gttcaacccc tgcctcccct gtaaaattcc ctagactttc 60 tagtttcttt ctttcctatg gctttccctg cccccgcttt ctcattggcc aatcttttga 120 atggtactta cggtgtcgac actcccgagg aagtggaacg tgtgcgatct gagcaacacg 180 aagaggctgc tgcggcttgt cgtaattaca agcctttacc cgctgtggat gtcatcgaga 240 gtgtcacaga ggatgcgcat tccctccgaa ctccggacgg agctccctct gaagaggtgt 300 ctgttgagct tgttacttat ggtgctgaag attaccttga aaaatctgat gatgagctcc 360 ttgtcgcttt tgagacgatg gtcaaaccca tgcgtatcgg acagttatgg tgccctgcgt 420 ttaataaatg ttcttttatt tccagcattg ctatggctag agctttgctg ttggtaccta 480 gcacatccaa ccgaaccatg aagtgttttg aagacctggt cgcagctatt tacactaaat 540 ccgatttcta ttatgatgat gagtgtgaag ctgatgacat tcagataaat gtctcgtctc 600 gcgatgtacc cggttactct ttcgaaccgt ggtcccgaac gtctggattt gaaccaccgc 660 ctatctgtga ggcgtgtgac atgatcatgt accagtgccc gtgttttgat tttaatgctt 720 taaagaaatc gtgcgctgag aggactttcg ctgatgatta tgttattgaa ggtttagatg 780 gtgttgttga caatgcaact ttgttgtcta atttaggccc gtttttggtg cctgtgaagt 840 gccaatacga gaaatgtcca acacccaccg tcgcgattcc tccgagctta aaccgtgcta 900 ctgatcgtgt tgatatcaat ttagttcaat ccatttgtga ttccactctg cccacgcata 960 gcaactacga tgactctttt catcaagtgt tcgtcgaaag cgctgactat tctattgatc 1020 tggatcatgt tagacttcgg caatctgatc tcattgcgaa aattccagat tcagggcata 1080 tgataccggt tttgaatacc gggagtggtc acaagagagt aggtacgacg aaggaggtcc 1140 ttacagcaat caagaaacgt aatgctgacg ttccagagct aggtgattcc gttaatctgt 1200 ccaggttgag aaaggttgtg gctgagagat ttttcatctc gtacattaat ggcaactctt 1260 tagccaccag caactttgtt aacgtcgtta gcaacttcca cgattacatg gaaaaatgga 1320 agtcttcagg cctctcgtat gacgatcttc cagatctgca tgctgagaat ttgcagtttt 1380 acgatcacat gataaaatct gatgtgaagc ctgtcgttag cgacacattg aacattgaca 1440 gaccggttcc agctactata acgtatcata agaaaggtat aaccccccag ttctcaccgt 1500 tattcacagc tctatttgag cgtttccaga gatgccttcg agaacgtatt attcttcctg 1560 ttggaaagat ttcatccctt gagatgtcag gatttgatgt taagaacaaa cattgtctcg 1620 agatcgattt gtccaaattc gacaagtctc aaggtgaatt ccatttgatg attcaggaac 1680 atattttgaa tggtctaggg tgcccagctc cgataactaa gtggtggtgt gatttccaca 1740 ggttctctta cattagagtc cgcagagctg gtgttggtat gcctatcagt ttccagagac 1800 gaactggtga tgcatttacc tacttcggta acaccattgt caccatggct gaatttgcat 1860 ggtgttacga caccgaccaa ttcgaaaagc ttttattctc aggcgatgat tctctaggat 1920 tttcagtgct tccccctgtt ggtgatccga gtaagttcac aactcttttc aacatggaag 1980 ctaaggtggt ggagccagca gtaccataca tttgttcgaa gtttctactc tctgacgagt 2040 tcggtaatac cttttccgtt ccagatccat tgcgcgaggt tcagcggtta ggaactaaga 2100 gaatccccta ttccgacaat gatgaattcc tgtttgctca cttcatgagc tttgttgatc 2160 gattgaagtt tttggaccga atgactcagt ctcgcatcga tcagctttca ctcttctttg 2220 agttgaaata caggaagtcc ggggcggagg ctgccttgat gttaggcgcc tttaagaaat 2280 ataccgctaa tttccagtcc tacaaagaac tctatttttc cgatcgtcgt cagtgcgaat 2340 tgatcaattc gtttagttgt gtagagttga ggattgagcg ttcgagtttc attaagcagc 2400 gaaagaagaa agatggaatt gaacgaaggc gcaatgacaa acgtcgaact ccaactggcc 2460 cgcatggtgg aggcgaagag acagagacga aggtctcaca agaagaatcg acgggaacga 2520 tgttacaaaa gtcccagcga gagggcgcgt tcaaatctca gactgttccg cttcccaccg 2580 ttctatcaag tagatggttc ggaactgata gagatgtacc gccgcgtgaa cgtggcggaa 2640 ttgtccgagt ctgaggctcc ttgttttacg ttaccagcgg aagatgacca tgattttgac 2700 gatacagatt ggttcgctgg taacgagtgg gcggaaggta cgttctgaac ccctccttcc 2760 tttctacctc cagttttctg aggcgggagc tgagttggca gtattgctac aaactgtctg 2820 aagtcactaa acgttttacg gtgaacgggt tgtccatcca gctaacggct aaaatggtca 2880 gtcgtggaga aatccacgcc ggagacttac aagtctctga ggcacctttg aaaccatctc 2940 ctaggcttct tcggaaggac ttcggtccgt gtacttctag cacaagatgc tagtataggg 3000 tacgggtgtc cccccgcttc gcgggggcct ctaaaaggag acca 3044 //