ID DQ767631; SV 2; linear; genomic RNA; STD; VRL; 6424 BP. XX AC DQ767631; AY309021; DQ767632-DQ767635; XX DT 21-JUN-2006 (Rel. 88, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Cucumber green mottle mosaic virus, complete genome. XX KW . XX OS Cucumber green mottle mosaic virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6424 RA Mandal S., Mandal B., Varma A.; RT "Cucumber green mottle mosaic virus Delhi isolate from India"; RL Unpublished. XX RN [2] RP 1-6424 RA Sohrab S.S., Mandal B., Varma A.; RT ; RL Submitted (29-MAY-2003) to the INSDC. RL Plant Virology Unit, Div. of Plant Pathology, I.A.R.I, PUSA, N. Delhi RL 110012, India XX RN [3] RP 1-6424 RA Mandal S., Mandal B., Varma A.; RT ; RL Submitted (16-MAY-2006) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, New RL Delhi, Delhi 110012, India XX RN [4] RP 1-6424 RA Mandal S., Mandal B., Varma A.; RT ; RL Submitted (17-MAY-2006) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, New RL Delhi, Delhi 110012, India XX RN [5] RC Sequence update by submitter RP 1-6424 RA Mandal S., Mandal B., Varma A.; RT ; RL Submitted (04-JUN-2009) to the INSDC. RL Division of Plant Pathology, Indian Agricultural Research Institute, New RL Delhi, Delhi 110012, India XX DR MD5; c2e4be99111ba8477667fcb79e28d0fd. DR EuropePMC; PMC4424317; 25953166. DR EuropePMC; PMC5364214; 28336589. DR RFAM; RF01072; TMV_UPD-PK3. XX CC On or before Jun 4, 2009 this sequence version replaced CC gi:109156755, gi:109156757, gi:109156759, gi:109156760, CC gi:32251033, gi:109156753. XX FH Key Location/Qualifiers FH FT source 1..6424 FT /organism="Cucumber green mottle mosaic virus" FT /host="bottle gourd" FT /mol_type="genomic RNA" FT /country="India:Delhi" FT /db_xref="taxon:12235" FT 5'UTR 1..60 FT CDS 61..5007 FT /codon_start=1 FT /transl_except=(pos:3493..3495,aa:OTHER) FT /product="RNA replicase" FT /note="186K protein; readthrough product" FT /db_xref="GOA:Q14V59" FT /db_xref="InterPro:IPR001788" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q14V59" FT /protein_id="ABG26381.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLVTDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CYDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDMITQHVQRHKGSGGCRPLPT FT FQIDAFRRYDSSPCAVTCSDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHREN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKISRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPVDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSNTSVDTCEDMDVTEDMEDIVLMAD FT KSHSYMSPEMARWADVKYGNNKGALVEYKVGTSMTLPATWAEKGKAILPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWNGTEESMQTFGLYDCEKCKWLLLPAEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSETKVYSVIRSLEVLNKEAIADPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATSDNVRTFDSFVMNRKIFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQIPFINRVMNFDYPKELRTLIVDNVE FT RRYVTHRCPRDVTSFLNTIYKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVPTKXQLMQNSLYVHRNIFLPVSKTG FT FYTDMQEFYDRCLPGNSFVLNDFDAVTMRLRDNEFNLQPCRLTLSNLDPVPALIKSEAQ FT NFLIPVLRTACERPRIPGLLENLVAMIKRNMNTPDLAGTVDITNMSISIVDNFFSSFVR FT DEVLLDHLDCVRASSIQSFSDWFSCQPTSAVGQLANFNFIDLPAFDTYMHMIKRQPKSR FT LDTSIQSEYPALQTIVYHPKVVNAVFGPVFKYLTTKFLSMVDSSKFFFYTRKKPEDLQE FT FFSDLSSHSDYEILELDVSKYDKSQSDFHFSIEMAIWEKLGLDDILAWMWSMGHKRTIL FT QDFQAGIKTLIYYQRKSGDVTTFIGNTFIIAACVASMLPLDKCFKASFCGDDSLIYLPK FT GLEYPDIQATANLVWNFEAKLFRKKYGYFCGKYIIHHANGCIVYPDPLKLISKLGNKSL FT VGYEHVEEFRISLLDVAHSLFNGAYFHLLDDAIHELFPNAGGCSFVINCLCKYLSDKRL FT FRSLYIDVSK" FT CDS 61..3495 FT /codon_start=1 FT /product="129K protein" FT /note="replicase" FT /db_xref="GOA:Q14V60" FT /db_xref="InterPro:IPR002588" FT /db_xref="InterPro:IPR027351" FT /db_xref="InterPro:IPR027417" FT /db_xref="UniProtKB/TrEMBL:Q14V60" FT /protein_id="ABG26380.1" FT /translation="MANINEQINNQRDAAASGRNNLVSQLASKRVYDEAVRSLDHQDRR FT PKMNFSRVVSTEHTRLVTDAYPEFSISFTATKNSVHSLAGGLRLLELEYMMMQVPYGSP FT CYDIGGNYTQHLFKGRSYVHCCNPCLDLKDVARNVMYNDMITQHVQRHKGSGGCRPLPT FT FQIDAFRRYDSSPCAVTCSDVFQECSYDFGSGRDNHAVSLHSIYDIPYSSIGPALHREN FT VRVCYAAFHFSEALLLGSPVGNLNSIGAQFRVDGDDVHFLFSEESTLHYTHSLENIKLI FT VMRTYFPADDRFVYIKEFMVKRVDTFFFRLVRADTHMLHKSVGHYSKSKSEYFALNTPP FT IFQDKATFSVWFPEAKRKVLIPKFELSRFLSGNVKISRMLVDADFVHTIINHISTYDNK FT ALVWKNVQSFVESIRSRVIVNGVSVKSEWNVPVDQLTDISFSIFLLVKVRKVQIELMSD FT KVVIEARGLLRRFADSLKSAVEGLGDCVYDALVQTGWFDTSSDELKVLLPEPFMTFSDY FT LEGMYEADAKIERESVSELLASGDDLFKKIDEIRNNYSGVEFDVEKFQEFCKELNVNPM FT LIGHVIEAIFSQKAGVTVTGLGTLSPEMGASVALSNTSVDTCEDMDVTEDMEDIVLMAD FT KSHSYMSPEMARWADVKYGNNKGALVEYKVGTSMTLPATWAEKGKAILPLSGICVRKPQ FT FSKPLDEEDDLRLSNMNFFKVSDLKLKKTITPVVYTGTIRERQMKNYIDYLSASLGSTL FT GNLERIVRSDWNGTEESMQTFGLYDCEKCKWLLLPAEKKHAWAVVLASDDTTRIIFLSY FT DESGSPIIDKKNWKRFAVCSETKVYSVIRSLEVLNKEAIADPGVHITLVDGVPGCGKTA FT EIIARVNWKTDLVLTPGREAAAMIRRRACALHKSPVATSDNVRTFDSFVMNRKIFKFDA FT VYVDEGLMVHTGLLNFALKISGCKKAFIFGDAKQIPFINRVMNFDYPKELRTLIVDNVE FT RRYVTHRCPRDVTSFLNTIYKAAVATTSPVVHSVKAIKVSGAGILRPELTKIKGKIITF FT TQSDKQSLIKSGYNDVNTVHEIQGETFEETAVVRATPTPIGLIARDSPHVLVALTRHTK FT AMVYYTVVFDAVTSIIADVEKVDQSILTMFATTVPTK" FT CDS 4994..5788 FT /codon_start=1 FT /product="movement protein" FT /note="29K protein" FT /db_xref="GOA:Q9WMZ9" FT /db_xref="InterPro:IPR001022" FT /db_xref="InterPro:IPR028919" FT /db_xref="UniProtKB/TrEMBL:Q9WMZ9" FT /protein_id="ABG26382.1" FT /translation="MSLSKVSVENSLKPEKFVKISWVDKLLPNYFSILKYLSITDFSVV FT KAQSYESLVPVKLLRGVDLTKHLYVTLLGVVVSGVWNVPESCRGGATVALVDTRMHSVA FT EGTICKFSAPATVREFSVRFIPNYSVVAADALRDPWSLFVRLSNVGIKDGFHPLTLEVA FT CLVATTNSIIKKGLRASVVESVVSSDQSIVLDSLSEKVEPFFDKVPISAAVMARDPSYR FT SRSQSVGGRGKRHSKPPNRRLDSASEESSSVSFEDGLQSDHT" FT CDS 5763..6248 FT /codon_start=1 FT /product="coat protein" FT /db_xref="GOA:Q77G05" FT /db_xref="InterPro:IPR001337" FT /db_xref="InterPro:IPR036417" FT /db_xref="UniProtKB/TrEMBL:Q77G05" FT /protein_id="AAP74202.1" FT /translation="MAYNPITPSKLIAFSASYVPVRTLLNFLVASQGTAFQTQAGRDSF FT RESLSALPSSVVDINSRFPDAGFYAFLNGPVLRPIFVSLLSSTDTRNRVIEVVDPSNPT FT TAESLNAVKRTDDASTAARAEIDNLIESISKGFDVYDRASFEAAFSVVWSEATTSKA" FT 3'UTR 6249..6424 XX SQ Sequence 6424 BP; 1651 A; 1241 C; 1530 G; 2002 T; 0 other; gttttaattt ttaaaattaa acaaacaaca acaacaacaa caaacaattt taaaacaaca 60 atggcaaaca ttaatgaaca aatcaacaac caacgtgacg ccgcggctag cgggagaaac 120 aatctcgtta gccaattggc gtcaaaaagg gtgtatgacg aggctgttcg ctcgttggat 180 catcaagaca gacgcccgaa aatgaacttt tctcgtgtgg tcagtacaga gcacaccagg 240 cttgtaactg atgcgtatcc ggagttttcg attagcttta ccgccaccaa gaactctgta 300 cactcccttg cgggtggtct gaggctcctt gaattggaat acatgatgat gcaagtgcct 360 tacggctcac cttgttatga catcggcggt aactatacgc agcacttgtt caaaggtaga 420 tcatatgtgc attgctgcaa tccgtgccta gatcttaaag atgttgcgag gaatgtgatg 480 tacaacgata tgatcacgca acatgtacag aggcacaagg gatctggcgg gtgcagacct 540 cttccaactt tccagataga tgcattcagg aggtacgata gttctccctg tgcggtcacc 600 tgttcagacg ttttccaaga gtgttcctat gattttggga gtggtaggga taatcatgca 660 gtctcgttgc attcaatcta cgatatccct tattcttcga tcggacctgc tcttcatagg 720 gagaacgtgc gagtttgtta tgcagccttt catttctcgg aggcattgct tttaggttcg 780 cctgtaggta atttgaatag tattggggct cagtttaggg tcgatggtga tgatgtgcat 840 tttcttttta gtgaagagtc tactttgcat tatactcata gtttagaaaa tattaaatta 900 atcgtgatgc gtacttactt tcctgctgat gataggtttg tgtacattaa ggagttcatg 960 gttaagcgtg tggatacttt tttctttagg ttggtcagag cagatacaca tatgcttcat 1020 aaatctgtgg ggcactattc gaaatcgaaa tctgagtact ttgcgctgaa tacccctccg 1080 atcttccaag ataaagccac gttttctgtg tggtttcctg aagcgaagcg caaggtgttg 1140 atacccaagt tcgaactttc gagatttctt tctgggaatg tgaaaatctc taggatgctt 1200 gtcgatgctg acttcgtcca taccattatt aatcacatta gcacgtatga taacaaggcc 1260 ttagtgtgga agaatgttca gtcctttgtg gaatccatac gctcaagagt aattgtaaac 1320 ggagtttccg taaaatctga gtggaacgta ccggttgatc agctcactga tatctcgttc 1380 tcgatattcc ttctcgtgaa ggttaggaag gtacagatcg agttaatgtc tgataaagtt 1440 gtaatcgagg cgaggggttt gcttcggagg ttcgcagaca gtctcaaatc cgccgtagaa 1500 ggactaggtg attgcgtcta tgatgctcta gttcagaccg gctggtttga cacctctagc 1560 gacgaactga aagtattgct acctgaaccg tttatgacct tttcggatta tcttgaaggg 1620 atgtacgagg cagatgcaaa gatcgagaga gagagtgtct ctgagttgct cgcttccggt 1680 gacgatttgt tcaagaaaat cgatgagata agaaacaatt acagtggagt cgaatttgat 1740 gtagagaaat tccaagaatt ttgcaaggaa ctgaatgtta atcctatgct aattggccat 1800 gttatcgaag ctattttttc gcagaaggct ggggtaacag taacgggtct gggcacgctc 1860 tctcctgaga tgggcgcttc tgttgcgtta tccaatacct ctgtagatac atgtgaagat 1920 atggatgtaa ctgaagatat ggaggatata gtgttgatgg cggacaagag tcattcttac 1980 atgtcccctg agatggcgag atgggctgat gttaaatatg gcaacaataa aggggctcta 2040 gtcgagtaca aagtcggaac ctcgatgact ttacctgcaa cctgggcaga gaagggtaag 2100 gctatcttac cgttgtcggg gatctgtgtg aggaaacccc aattttcgaa gccgcttgat 2160 gaggaagacg acttgaggtt atcaaacatg aatttcttta aggtgagcga tctaaagttg 2220 aagaagacta tcactccagt cgtttacact gggaccattc gagagaggca aatgaagaat 2280 tatattgatt acttatcggc ctctcttggt tctacgctgg gtaatctgga gagaattgtg 2340 cggagtgatt ggaacggtac tgaggagagt atgcaaacgt tcgggttgta tgactgcgaa 2400 aagtgcaagt ggttattgtt accagccgag aagaagcacg catgggccgt ggttctggca 2460 agtgatgata ccactcgcat aattttcctt tcatatgacg aatctggttc tcctataatt 2520 gataagaaaa actggaagcg atttgctgtc tgttctgaga ccaaagtcta tagtgtaatt 2580 cgtagtttag aggttctaaa taaggaagca atagccgacc ccggggttca cataacatta 2640 gttgacggag tgccgggttg tggaaagacc gccgagatta tagcgagggt caattggaaa 2700 actgatctag tattgactcc cgggagggag gcggctgcta tgattaggcg gagagcctgt 2760 gccctgcaca agtcacctgt ggcaaccagt gacaacgtca gaactttcga ttcttttgtg 2820 atgaatagga aaatctttaa gtttgacgct gtctatgttg acgagggtct gatggtccat 2880 acgggattac ttaattttgc gttaaagatc tcaggttgta aaaaagcctt catctttggt 2940 gatgctaagc aaatcccgtt tataaataga gtcatgaatt ttgattatcc taaggagtta 3000 agaactttaa tagtcgataa tgtagagcgt aggtatgtca cccataggtg tcctagagat 3060 gtcactagtt ttcttaatac tatctataaa gccgctgtcg ctactactag tccggttgta 3120 cattctgtga aggcaattaa agtgtcaggg gccggtattc tgaggcccga gttgacaaag 3180 atcaaaggaa agataataac gtttactcaa tctgataagc agtccttgat caagagtggg 3240 tacaatgatg tgaataccgt gcatgaaatt cagggagaaa cctttgagga gacggcagtt 3300 gtgcgtgcca ccccgactcc aataggtttg attgcccgtg attcaccaca tgtactagtg 3360 gccttaacta ggcacactaa ggcaatggtg tattatactg ttgtgttcga tgcagttaca 3420 agtataatag cggatgtgga aaaggtcgat cagtcgatct tgactatgtt tgctaccact 3480 gtgcctacca aatagcaatt aatgcagaac tcgctgtatg tccatcgtaa tattttcctc 3540 cctgtcagta aaacggggtt ttatacagac atgcaggagt tctatgatag atgccttcct 3600 gggaattcct tcgtactgaa tgatttcgat gccgtaacca tgcggttgag ggacaacgaa 3660 tttaacttac aaccttgtag gctaaccttg agtaatttag atccggtacc cgctttgatt 3720 aagagtgaag cgcagaattt tctgatcccc gttttgcgta cggcctgtga aaggccgcgc 3780 attccgggtc ttcttgagaa tcttgtagct atgataaaga ggaatatgaa tactcctgat 3840 ctagctggga ccgtagatat aactaacatg tcgatttcta tagtagataa cttcttttct 3900 tcttttgtta gggatgaggt tttgcttgat cacttagatt gtgttagggc tagttccatt 3960 caaagttttt ctgattggtt ttcgtgtcag ccaacctcag cggttggcca gttagctaat 4020 ttcaatttca tagatttgcc tgcctttgat acttatatgc atatgattaa gaggcaaccc 4080 aagagtcggt tagatacttc gattcagtct gaatatccgg ccttgcaaac tattgtttat 4140 caccctaaag tggtaaatgc agtttttggt ccggttttca agtatttgac caccaagttt 4200 cttagtatgg tagatagttc caagtttttc ttttacacta ggaaaaaacc agaagatctg 4260 caggaatttt tctcagatct ctcttcccat tctgattatg agattcttga gcttgatgtt 4320 tctaaatatg acaagtcgca atccgatttc catttctcta ttgagatggc aatttgggaa 4380 aaattggggc tggacgatat tttggcttgg atgtggtcta tgggtcataa aagaactata 4440 ctgcaagatt tccaagccgg gataaagacg ctcatttact atcaacggaa gtctggtgat 4500 gtaactactt ttataggtaa tacctttatt atcgcagcgt gtgtagctag tatgttgccg 4560 ttagataagt gttttaaagc tagtttttgt ggtgatgatt cgctgatcta ccttcctaag 4620 ggcttggagt atcctgatat acaggctact gccaaccttg tttggaattt tgaggcgaaa 4680 cttttccgaa agaagtatgg ttacttctgt gggaagtata taattcacca tgccaacggt 4740 tgtattgttt accctgaccc tttaaaatta attagtaaat taggtaataa gagtcttgta 4800 gggtatgagc atgttgagga gtttcgcata tctctcctcg acgttgctca tagtttgttt 4860 aatggtgctt atttccattt actcgacgat gcaatccacg aattatttcc taatgctggg 4920 ggttgcagtt ttgtaattaa ttgtttgtgt aagtatttga gtgataagcg ccttttccgt 4980 agtctttaca tagatgtctc taagtaaggt gtcagtcgag aactcgttga aacctgagaa 5040 gtttgtcaaa atctcttggg tcgataagtt gctccctaac tatttttcca ttcttaagta 5100 tttatctata actgacttca gtgtagttaa agctcagagc tatgaatccc tcgtgcctgt 5160 caagttgttg cgtggtgttg atcttacaaa acacctttat gtcacattgt tgggcgttgt 5220 ggtttctggt gtatggaacg taccggaatc ctgtaggggt ggtgctactg ttgctctggt 5280 tgacacaagg atgcattctg ttgcagaggg aactatatgc aaattttcag ctcccgccac 5340 cgtccgcgaa ttctctgtta ggttcatacc taattattct gtcgtggctg cggatgccct 5400 tcgcgatcct tggtctttat ttgtgagact ctctaatgtg ggtattaaag atggtttcca 5460 tcctttgacc ttagaggtcg cttgtttagt cgctacaact aactctatta tcaaaaaggg 5520 tcttagagct tctgtagtcg agtctgtcgt ctcttccgat cagtctattg tcctagattc 5580 tttatccgag aaagttgaac ctttctttga caaagttcct atttcagcgg ctgtaatggc 5640 aagagatccc agttataggt ctaggtcgca gtctgtcggt ggtcgtggta agcggcattc 5700 taaacctcca aatcggaggt tggactctgc ttctgaagag tccagttctg tttcttttga 5760 agatggctta caatccgatc acacctagca aacttattgc gtttagtgct tcttatgttc 5820 ccgtcaggac tttacttaat tttctagttg cttcacaagg taccgctttc cagactcaag 5880 cgggaagaga ttctttccgc gagtccctgt ctgcgttacc ctcgtctgtc gtagatatta 5940 attctaggtt cccagatgcg ggtttttacg ctttcctcaa cggtcctgtg ttgaggccta 6000 tcttcgtttc gcttctcagc tccacggata cgcgcaatag ggtcattgag gttgtagatc 6060 ctagcaatcc tacgactgct gagtcgctta acgctgtaaa gcgtactgat gacgcgtcta 6120 cagccgctag ggctgaaata gataatttaa tagagtctat ttctaagggt tttgatgttt 6180 acgatagggc ttcatttgaa gccgcgtttt cggtagtctg gtcagaggct accacctcga 6240 aagcttagtt tcgagggtct tctgatggtg gtgcacacca aagtgcatag tgctttcccg 6300 ttcacttaaa tcgaacggtt tgctcattgg tttgcggaaa cctctcacgt gtgacgttga 6360 agtttctatg ggcagtaatt ctgcaagggg ttcgaatccc cccttttccc tgggtaaggg 6420 ccca 6424 //