ID DQ680848; SV 1; linear; genomic RNA; STD; VRL; 4082 BP. XX AC DQ680848; XX DT 23-JUL-2006 (Rel. 88, Created) DT 23-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Cocksfoot mottle virus isolate CfMV-No P1, P2A2B, P2A, and CP genes, DE complete cds. XX KW . XX OS Cocksfoot mottle virus OC Viruses; Riboviria; Solemoviridae; Sobemovirus. XX RN [1] RP 1-4082 RX DOI; 10.1007/s11262-005-6917-x. RX PUBMED; 16732485. RA Meier M., Paves H., Olspert A., Tamm T., Truve E.; RT "P1 protein of Cocksfoot mottle virus is indispensable for the systemic RT spread of the virus"; RL Virus Genes 32(3):321-326(2006). XX RN [2] RP 1-4082 RA Meier M., Olspert A., Tamm T., Makinen K., Truve E.; RT ; RL Submitted (09-JUN-2006) to the INSDC. RL Dept of Gene Technology, Tallinn University of Technology, Akadeemia tee RL 15, Tallinn 12618, Estonia XX DR MD5; 6f5a802c53865fc7ea194af979de89a1. DR EuropePMC; PMC3791421; 23830075. DR RFAM; RF01838; sobemo_FSE. XX FH Key Location/Qualifiers FH FT source 1..4082 FT /organism="Cocksfoot mottle virus" FT /host="cocksfoot" FT /lab_host="oat cv. Jaak" FT /isolate="CfMV-No" FT /mol_type="genomic RNA" FT /db_xref="taxon:40979" FT CDS 70..396 FT /codon_start=1 FT /product="P1" FT /note="orf1; silencing supressor" FT /db_xref="GOA:Q66011" FT /db_xref="UniProtKB/Swiss-Prot:Q66011" FT /protein_id="ABG73617.1" FT /translation="MCEPPPGFITVQCYTSDDLLTGDSTIVKSIPVRSCFFRQGVEVVL FT FRCESNKHRWLKIRGPVSLTVHCDICEFRETVEIPSLPKGFKVSSDFSYSVTWNCCYSR FT GRTE" FT CDS join(429..1640,1640..3256) FT /codon_start=1 FT /ribosomal_slippage FT /product="P2A2B" FT /note="orf2a2b; serine protease; VPg; RdRp; RNA-dependent FT RNA polymerase" FT /db_xref="GOA:Q0PW25" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR001795" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q0PW25" FT /protein_id="ABG73619.1" FT /translation="MGCSVVGNCKSVMLMSRMSWSKLALLISVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVCEEASELILGVSLETTRPSPARVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSSASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GPDGQEYLLTALHVWETNISHLCKDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGIAFTEYNISGITVKTSDREWTTAEALRVARYKPLGGGKAWGDSDDEDTQETA FT IRPLNLPAGGLPTGQSALGQLIEYAGYVWRDEGIINSNGMPFRSAGKSSCRFREAVCRA FT VHRDVRAAETEFPELKELAWPSRGSKAEIGSLLFQAGRFERVEAPANLQLAITNLQAQY FT PRSRPRSCFRREPWCREDFVAEIEKIAHSGEINLKASPGVPLAEIGVSNQQVIDVAWPL FT VCEAVVERLHALASVDPRQHDWSPEELVKRGLCDPVRLFVKQEPHSRQKIEQGRFRLIS FT SVSLVDQLVERMLFGPQNTTEIALWHSNPSKPGMGLSKASQVALLWEDLARKHQTHPGA FT MADISGFDWSVQDWELWADVSMRIELGSFPALMAKAAISRFYCLMNATFQLTNGELLTQ FT ELPGLMKSGSYCTSSSNSRIRCLMAELIGSPWCIAMGDDSVEGWVDDAPRKYSALGHLC FT KEYEACPVLPNGDLKEVSFCSHLISKGRAELETWPKCLFRYLSGPHDVESLEMELSSSR FT RWGQIVRYLRRIGRVSGNDGEERSSNESPATTKTQGSAAAWGPPQEAWPVDGASLSTFE FT PSSSGWFHLEGW" FT CDS 429..2135 FT /codon_start=1 FT /product="P2A" FT /note="orf2a; serine protease; VPg" FT /db_xref="GOA:Q89504" FT /db_xref="InterPro:IPR000382" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/Swiss-Prot:Q89504" FT /protein_id="ABG73618.1" FT /translation="MGCSVVGNCKSVMLMSRMSWSKLALLISVAMAAAMTDSPPTLICM FT GILVSVVLNWIVCAVCEEASELILGVSLETTRPSPARVIGEPVFDPRYGYVAPAIYDGK FT SFDVILPISALSSASTRKETVEMAVENSRLQPLESSQTPKSLVALYSQDLLSGWGSRIK FT GPDGQEYLLTALHVWETNISHLCKDGKKVPISGCPIVASSADSDLDFVLVSVPKNAWSV FT LGVGVARLELLKRRTVVTVYGGLDSKTTYCATGVAELENPFRIVTKVTTTGGWSGSPLY FT HKDAIVGLHLGARPSAGVNRACNVAMAFRVVRKFVTVENSELYPDQSSGPARELDAETY FT TERLEQGIAFTEYNISGITVKTSDREWTTAEALRVARYKPLGGGKAWGDSDDEDTQETA FT IRPLNYQRAGSLRGSPPLANLSSTRATSGVTKESSIPTACLSDPLESRVAGLEKLCAER FT FTEMFELLRQSSQNSKSSLGQAADRKQKSDRSSSKPEGLKESKRPPICNWQSLTSKPST FT RGPDPAPVSAESPGVVKTSSQKSKRSRTRGKSTSRQVPASPSPKSGSATSK" FT CDS 3093..3857 FT /codon_start=1 FT /product="CP" FT /note="orf4; coat protein" FT /db_xref="GOA:Q66012" FT /db_xref="InterPro:IPR000937" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/Swiss-Prot:Q66012" FT /protein_id="ABG73620.1" FT /translation="MMVRKGAATKAPQQPKPKAQQQPGGRRRRRGRSMEPVSRPLNPPA FT AVGSTLKAGRGRTAGVSDWFDTGMITSYLGGFQRTAGTTDSQVFIVSPAALDRVGTIAK FT AYALWRPKHWEIVYLPRCSTQTDGSIEMGFLLDYADSVPTNTRTMASSTSFTTSNVWGG FT GDGSSLLHTSMKSMGNAVTSALPCDEFSNKWFKLSWSTPEESENAHLTDTYVPARFVVR FT SDFPVVTADQPGHLWLRSRILLKGSVSPSTNL" XX SQ Sequence 4082 BP; 949 A; 1050 C; 1133 G; 950 T; 0 other; gataatagtg cgaagaaaga cacactgtta tcgttcccct cccgaatcag aggttgagaa 60 gtagcttaga tgtgcgaacc tccccctggt tttataaccg ttcagtgcta cacgagcgac 120 gatttgttga caggcgattc cacaattgtc aagtccattc ccgtccgctc gtgcttcttc 180 cgccaaggcg ttgaagttgt tctgttccgg tgtgagtcca acaaacatcg ctggttgaag 240 atcagaggtc ctgtgagctt gacagttcac tgtgatatct gtgaattccg cgagaccgtt 300 gagattccat ccctgcccaa aggcttcaaa gtatcaagcg atttctctta cagtgtaacg 360 tggaattgct gctacagccg tggcaggaca gagtagcacc gaggttagtt ggttgagggt 420 gaccaagaat gggttgttct gttgttggaa actgcaagtc cgtgatgttg atgagcagga 480 tgagctggtc aaagctagct ctcctcatat ccgtcgcaat ggcggcagcc atgacagact 540 ccccacccac tctgatatgt atggggatcc tagtgagcgt ggtgctcaac tggatcgttt 600 gcgcagtatg cgaagaagct tcagagctaa ttctgggcgt ttccttggaa acgactcgtc 660 ctagtcccgc acgggtaata ggagagccgg tctttgatcc ccggtatggc tatgtcgctc 720 ctgctatcta tgatggcaaa tcgttcgacg tgatcctgcc tatttctgct ctgtcctccg 780 cttcaacaag gaaggagaca gtggaaatgg cggtcgagaa ctcacgatta cagcctctag 840 agagcagtca aacgccaaag tccttggtgg ctttgtactc gcaagatcta ctatcaggtt 900 ggggttctcg gattaaaggc cctgatggcc aggaatacct cttgacagcc ctgcatgtgt 960 gggagactaa catctctcac ctctgcaagg atggaaagaa ggtaccgata agcggatgcc 1020 caatcgttgc aagctctgct gattcggact tggactttgt cctcgtatcc gtgccgaaga 1080 acgcttggtc tgttttaggc gtcggtgtgg ctcgtttgga attgctcaaa cgccgaaccg 1140 tcgtaacagt ctatggaggc ctagactcaa agaccaccta ctgtgccact ggcgtggcag 1200 agttggaaaa ccccttccgt atagtaacga aagtgacaac gacggggggt tggtcaggct 1260 ctccactcta ccacaaggac gcaatcgtcg ggttgcactt gggagcgaga ccatctgcgg 1320 gggttaatag agcgtgtaac gttgctatgg ccttcagggt tgtgcggaaa tttgtcactg 1380 ttgaaaacag tgagttatat cccgaccaaa gcagtggccc cgcccgagag cttgatgctg 1440 agacatacac ggaaaggcta gagcaaggaa ttgcttttac tgagtacaat atatccggca 1500 ttacggtgaa aacctccgac cgagagtgga caacagctga ggcgttgcgt gtcgcaagat 1560 acaaaccctt gggtggagga aaagcatggg gtgatagtga tgacgaggac acccaagaaa 1620 ctgcaatccg gcctttaaac taccagcggg cgggctccct acggggcagt ccgcccttgg 1680 ccaacttatc gagtacgcgg gctacgtctg gcgtgacgaa ggaatcatca attccaacgg 1740 catgcctttc cgatccgctg gaaagtcgag ttgccggttt agagaagctg tgtgcagagc 1800 ggttcacaga gatgttcgag ctgctgagac agagttccca gaactcaaag agctcgcttg 1860 gccaagccgc ggatcgaaag cagaaatcgg atcgctcctc ttccaagccg gaaggtttga 1920 aagagtcgaa gcgcccgcca atctgcaatt ggcaatcact aacctccaag cccagtaccc 1980 gaggtcccga ccccgctcct gtttccgcag agagccctgg tgtcgtgaag acttcgtcgc 2040 agaaatcgaa aagatcgcgc actcggggga aatcaacctc aaggcaagtc ccggcgtccc 2100 cctcgccgaa atcggggtca gcaaccagca agtaattgac gtggcctggc ccttggtgtg 2160 tgaggcggtg gtggaaaggc tccatgcctt ggcatccgta gacccgcgcc agcacgactg 2220 gtctccagaa gaactcgtga aaagaggatt gtgcgatccc gtgagactct tcgtcaaaca 2280 ggaacctcat tctcgacaga agatcgaaca aggtcgtttc cgacttatct cttctgtctc 2340 gcttgtagat caactggtag aacgcatgct tttcgggccc cagaacacca cggagattgc 2400 tctgtggcat tcaaatccct ctaaaccagg gatgggcctg tcgaaagcta gtcaagtcgc 2460 gctgttatgg gaggatttgg cgcgcaagca ccaaacccac ccgggtgcca tggctgacat 2520 ctcggggttc gactggtccg tccaggactg ggaactctgg gctgacgtat ctatgaggat 2580 tgagctaggc tcgtttccag cgttgatggc gaaggcagct atatcgcggt tttactgctt 2640 gatgaacgct accttccaat taacgaatgg agagctcttg acccaggaac tgccaggact 2700 catgaagtcc gggtcgtact gtacctccag ctccaactcc cgcattcgct gccttatggc 2760 tgagctcatc ggctcgcctt ggtgtatcgc aatgggagat gattctgttg agggatgggt 2820 cgatgatgct cccaggaaat actcagcact aggccatctc tgtaaagagt atgaagcgtg 2880 tccagtgctc cccaacggag atttgaagga ggtgagcttt tgctcccatc tcatctctaa 2940 gggtcgagcg gaactggaga cgtggcccaa gtgtctgttt cgatatctca gtggaccaca 3000 tgatgtggaa agcttggaga tggagctaag ctcttctcgc cgctggggcc agatagtcag 3060 atacctccgc cggattggcc gggtctccgg aaatgatggt gaggaaagga gcagcaacga 3120 aagccccgca acaaccaaaa cccaaggctc agcagcagcc tgggggccgc cgcaggaggc 3180 gtggccggtc gatggagcca gtctctcgac ctttgaaccc tccagcagcg gttggttcca 3240 ccttgaaggc tggtagaggc aggactgctg gtgtgagtga ctggtttgac accggtatga 3300 tcaccagcta cctaggtggt tttcagcgca cagctggaac tactgactcc caggtattca 3360 tcgtgtcacc cgctgcattg gaccgtgttg gaaccatagc gaaggcgtat gcgttgtgga 3420 gacctaagca ttgggaaatc gtgtatctcc ccagatgttc tactcagaca gatgggtcga 3480 tcgagatggg atttctctta gattatgcgg atagcgtccc aaccaacacc cgaactatgg 3540 cctcctctac ctccttcaca acttcaaacg tgtggggagg tggagatggc agcagtttgc 3600 tgcacacgtc catgaagtcc atgggcaacg ctgttacgag cgctcttcct tgtgatgagt 3660 tctcgaacaa atggtttaag ttatcttgga gcactcctga ggaatcggag aacgctcatt 3720 taactgacac ctacgttccg gcgcgcttcg tggtgaggtc tgacttccca gtagtcacgg 3780 ctgaccaacc cggtcatctc tggctccggt ccaggatctt gctcaaggga tcagtttccc 3840 cttctacaaa tttgtagtca agtactgcag ggatgacaaa cctgtaaaac agtgaccgcg 3900 cttggtggag tcgcgttcgt ccacttggaa atctaactcc aaagctttgc ttgaagattg 3960 acggattggt atcatctccg taaggatacc gaccactggc tgggctcgtc acccctcctt 4020 tgtgtctcac aaacgacgaa tctgcgctcg gccaatgaca ggatcatggc cggggcaggt 4080 gc 4082 //