Dbfetch

Dbfetch

ID   DQ680136; SV 1; linear; genomic RNA; STD; VRL; 783 BP.
XX
AC   DQ680136;
XX
DT   27-SEP-2006 (Rel. 89, Created)
DT   23-JAN-2007 (Rel. 90, Last updated, Version 4)
XX
DE   Barley yellow dwarf virus - MAV isolate MAV38P5o03 coat protein gene,
DE   partial cds; and 17k probable movement protein (MP) gene, complete cds.
XX
KW   .
XX
OS   Barley yellow dwarf virus MAV
OC   Viruses; Riboviria; Luteoviridae; Luteovirus.
XX
RN   [1]
RP   1-783
RX   DOI; 10.1007/s00705-006-0846-4.
RX   PUBMED; 17013543.
RA   Robertson N.L., French R.;
RT   "Genetic analysis of a novel Alaska barley yellow dwarf virus in the family
RT   Luteoviridae";
RL   Arch. Virol. 152(2):369-382(2007).
XX
RN   [2]
RP   1-783
RA   Robertson N.L., French R.;
RT   ;
RL   Submitted (08-JUN-2006) to the INSDC.
RL   Arctic Plant Germplasm Research and Introduction, United States Dept. of
RL   Agriculture, Agricultural Research Service, 533 E. Fireweed Ave., Palmer,
RL   AK 99645, USA
XX
DR   MD5; d1ce656ffdb00576eba6838dc2ce8da6.
DR   GrainGenes; DQ680136; DQ680136.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..783
FT                   /organism="Barley yellow dwarf virus MAV"
FT                   /host="Avena sativa L."
FT                   /isolate="MAV38P5o03"
FT                   /mol_type="genomic RNA"
FT                   /country="USA:Alaska, Palmer"
FT                   /isolation_source="leaf tissue from infected oats at site
FT                   5"
FT                   /collection_date="2003"
FT                   /db_xref="taxon:2169984"
FT   CDS             194..>783
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="ORF3"
FT                   /db_xref="GOA:Q06Q38"
FT                   /db_xref="InterPro:IPR001517"
FT                   /db_xref="UniProtKB/TrEMBL:Q06Q38"
FT                   /protein_id="ABG77633.1"
FT                   /translation="MNSVGLNSRKRKRNGQPKRTRTIRTVVMAQPARPRPRRRGRRRAR
FT                   GGWTNSVPRPTGRTEIFIFSVNDIKANSSGVIKFGPDLSQCTALSGGILKSYHRYKISN
FT                   VKIEFKSHASSTTVGAMFIELDTSCTQSALGSYINSFTLSKSGTKAFGPRQIGGEDFRE
FT                   STVNQFYMLYKANGSTSDTAGQFIITIKVGNINP"
FT   gene            234..692
FT                   /gene="MP"
FT   CDS             234..692
FT                   /codon_start=1
FT                   /gene="MP"
FT                   /product="17k probable movement protein"
FT                   /note="ORF4"
FT                   /db_xref="InterPro:IPR001964"
FT                   /db_xref="UniProtKB/TrEMBL:Q06Q37"
FT                   /protein_id="ABG77634.1"
FT                   /translation="MDNQNALEQFGQWLWHSPPDQDPDDEVVDAQEEDGQILYLDQQAG
FT                   LRYSYSQSTTLKPTPQGSSNSAPIFRNAQRFQVEYLSPTTVTRSQTSRLSLSHTRPPLQ
FT                   SAQCLLNSTLRAHNQPWVATLTHSPSQNPEPKRSALARLVGKTSGKAR"
XX
SQ   Sequence 783 BP; 246 A; 197 C; 160 G; 180 T; 0 other;
     aaagtgtgaa ggtgacatct ccacatctgc aatcaatact cctggcaata ccacaaacat        60
     ccccgcaata tagctattaa ttaccaaatc ttggccgggt ttggcatagg gtttattata       120
     tctatcccct gtacattagc tctcacgtac tttgtttaca ataaagtttc agacaccact       180
     agagaggtgg tgaatgaatt cagtaggcct taattccaga aagaggaaga gaaatggaca       240
     accaaaacgc actcgaacaa ttcggacagt ggttatggca cagcccgcca gaccaagacc       300
     cagacgacga ggtcgtagac gcgcaagagg aggatggaca aattctgtac ctagaccaac       360
     aggcaggact gagatattca tattctcagt caacgacatt aaagccaact cctcaggggt       420
     catcaaattc ggccccgatc tttcgcaatg cacagcgctt tcaggtggaa tacttaagtc       480
     ctaccaccgt tacaagatct caaacgtcaa gattgagttt aagtcacacg cgtcctccac       540
     tacagtcggc gcaatgttta ttgaactcga cacttcgtgc acacaatcag ccttgggtag       600
     ctacattaac tcattcaccc tctcaaaatc cggaaccaaa gcgttcggcc ctcgccagat       660
     tggtggggaa gacttcaggg aaagcacggt gaatcaattt tacatgctct acaaagccaa       720
     cggatcaacc tcagacacag ctggccaatt tatcattacg ataaaagtag ggaatataaa       780
     tcc                                                                     783
//