ID DQ673859; SV 1; circular; genomic DNA; STD; VRL; 2767 BP. XX AC DQ673859; XX DT 15-JUL-2006 (Rel. 88, Created) DT 08-MAY-2018 (Rel. 136, Last updated, Version 3) XX DE Chilli leaf curl virus segment A, complete sequence. XX KW . XX OS Chilli leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2767 RX DOI; 10.1111/j.1365-3059.2007.01540.x. RX AGRICOLA; IND43887812. RA Shih S.L., Tsai W.S., Green S.K., Singh D.; RT "First report of Tomato leaf curl Joydebpur virus infecting chilli in RT India"; RL Plant Pathol. 56(2):341-341(2007). XX RN [2] RP 1-2767 RA Shih S.L., Tsai W.S., Green S.K., Singh D.; RT "Molecular characterization of a begomovirus associated with chili leaf RT curl disease in North India"; RL Unpublished. XX RN [3] RP 1-2767 RA Shih S.L., Green S.K., Singh D.; RT ; RL Submitted (05-JUN-2006) to the INSDC. RL Virology, AVRDC-The World Vegetable Center, P.O.Box 42, Shanhua, Tainan, RL Taiwan, Republic of China XX DR MD5; f12c5e96036219040fa0110860b6e9e6. XX FH Key Location/Qualifiers FH FT source 1..2767 FT /organism="Chilli leaf curl virus" FT /segment="A" FT /mol_type="genomic DNA" FT /country="India" FT /isolation_source="chili" FT /db_xref="taxon:172278" FT gene 145..510 FT /gene="V2" FT CDS 145..510 FT /codon_start=1 FT /gene="V2" FT /product="pre-coat protein" FT /db_xref="GOA:Q0PXT7" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q0PXT7" FT /protein_id="ABG56907.1" FT /translation="MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDL FT ISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQ FT EAQDVQDVQKPRCSEGM" FT gene complement(296..1144) FT /gene="C5" FT CDS complement(296..1144) FT /codon_start=1 FT /gene="C5" FT /product="C5 protein" FT /db_xref="GOA:Q0PXT6" FT /db_xref="InterPro:IPR006892" FT /db_xref="InterPro:IPR013671" FT /db_xref="UniProtKB/TrEMBL:Q0PXT6" FT /protein_id="ABG56903.1" FT /translation="MECNSAYNSCTKFKHNKIQSLLISVGYRVVKINTDLQRRIHRVRG FT VGTRHIQHQCILTMILILASLLLVIHNIIINPNKLLHESLLLRCVLATCNGCMPLPQHL FT VPVTMHILDSCRTRLIVKHVKNLTKILGLINGPTISNKKKHNTIRMILSLYILIHPNLA FT QNIDRFYTKPFTNSVGQTSTTSNITNTHDFTNVLDIMSGLKRLDLTRAFTSPRNIWASV FT HPVHPGLPVHGPVGPCFCFGDADNGGSNTAGIWAVEVETAAYLRGGRGNDYICWSLRHN FT F" FT gene 305..1075 FT /gene="V1" FT CDS 305..1075 FT /codon_start=1 FT /gene="V1" FT /product="coat protein" FT /db_xref="GOA:Q0PXT5" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:Q0PXT5" FT /protein_id="ABG56904.1" FT /translation="MSKRPADIIISTPASKVRRRLNFDSPYTSRVAAPIVRVTKAKAWA FT NRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHR FT VGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEIFNMFDNEP FT STATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENH FT SENALMLYMACTHASNPVYATLKIRIYFYDSVTN" FT gene complement(1078..1482) FT /gene="C3" FT CDS complement(1078..1482) FT /codon_start=1 FT /gene="C3" FT /product="replication enhancement protein" FT /db_xref="GOA:Q0PXT4" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q0PXT4" FT /protein_id="ABG56906.1" FT /translation="MDSRTGEPITAAQAKNGVFIWEITNPLYFKITEHHSRPFLRNQDI FT ITVQIRFNHNLRKALAIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQFLNNFAVISINN FT VIRAVDHVLWNVIAHTIHVQSSNIIKFNLY" FT gene complement(1223..1627) FT /gene="C2" FT CDS complement(1223..1627) FT /codon_start=1 FT /gene="C2" FT /product="transcriptional activation protein" FT /db_xref="GOA:Q0PXT3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:Q0PXT3" FT /protein_id="ABG56905.1" FT /translation="MQPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALR FT CHGYGFTHRGTHHCSSSKEWRVYLGDNKSPVFQDNRAPQPAIPEEPRHHHRANTVQSQP FT EESVGDTQMFSNLPNLDDLTASDWSFLKGI" FT gene complement(1530..2615) FT /gene="C1" FT CDS complement(1530..2615) FT /codon_start=1 FT /gene="C1" FT /product="replication-associated protein" FT /db_xref="GOA:Q0PXT2" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:Q0PXT2" FT /protein_id="ABG56902.1" FT /translation="MAPPKRFQIYAKNYFLTYPQCSLTKEQALSQLQNLSTPTNKLFIR FT VSRELHENGEPHLHVLIQFEGKFKCQNNRFFDLVSPTRPAHFHPNIQGAKSSSDVKAYV FT EKDGDFIDFGVFQVDGRSARGGQQSANDAYAEAINSGSKTAALNILREKAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFSSSSFDQVPEDLEEWAAENVVSAAARPLRPMSIVIEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPAIFLCNPGHNSSYKEFLDEEKNSALKHWALKNATFITLEGPL FT YSGSNQSAAQASQEGDQASSR" FT gene complement(2165..2464) FT /gene="C4" FT CDS complement(2165..2464) FT /codon_start=1 FT /gene="C4" FT /product="C4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:Q0PXT1" FT /protein_id="ABG56908.1" FT /translation="MKMGNLICTSSYNSKVNSNARTTDSSTSFPQPGQHISIRTFRELK FT ARQMSRPMWRKTETSLILEFSRSMEDQLEEVSSLPTTHMPRQSIQGPKLRPSIY" XX SQ Sequence 2767 BP; 749 A; 572 C; 652 G; 794 T; 0 other; accggatggc cgcgattttt tcttgtgggc cccacaacac acgtgctgac aaggacaagt 60 gaaccaatta gaaacgcccc tcaaagctta attattcaat ggtcccctat ataaacttgg 120 tccccaagta gtgcacacat accaatgtgg gatccgttag taaacgagtt tcccgaaacc 180 gttcacggtt ttaggtgtat gctagccgtt aaatatctgc agctagtaga aaagacgtat 240 tctccagaca ccctcgggta cgatttaatc cgggatttaa tttcggttat tagggctaga 300 aattatgtcg aagcgaccag cagatataat catttccacg cccgcctcga aggtacgccg 360 ccgtctcaac ttcgacagcc catataccag ccgtgttgct gcccccattg tccgcgtcac 420 caaagcaaaa gcatgggcca acaggcccat gaacaggaag cccaggatgt acaggatgta 480 cagaagccca gatgttccga ggggatgtga aggcccgtgt aaggtccagt cttttgagtc 540 cagacatgat atccagcaca ttggtaaagt catgtgtgtt agtgatgtta ctcgtggtac 600 tggtctgacc cacagagttg gtaaaaggtt ttgtgtaaaa tctgtctatg ttctgggcaa 660 gatttggatg gatgagaata taaagactaa gaatcatacg aatagtgtta tgttttttct 720 tgttagagat cgtaggcccg ttgataagcc ccaagatttt ggtgagattt ttaacatgtt 780 tgacaatgag cctagtacgg caactgtcaa gaatgtgcat cgtgacaggt accaggtgct 840 gaggaagtgg catgcaaccg ttacaggtgg ccaatacgca tcgaaggagc aagctctcgt 900 gaagaagttt attagggtta ataattatgt tgtgtataac cagcaagagg ctggcaagta 960 tgagaatcat agtgagaatg cattgatgtt gtatatggcg tgtacccacg cctcgaaccc 1020 tgtgtatgcg acgttgaaga tccgtattta tttttacgac tctgtaacca actgaaatta 1080 ataaagattg aattttatta tgtttgaact ttgtacatga attgtatgcg ctattacatt 1140 ccataataca tggtcgacag ctctaattac attgttgata ctaattacag caaaattatt 1200 taaaaactgc aacacttggg tcctaaatac ccttaagaaa tgaccagtcc gaggctgtaa 1260 ggtcgtccag attcggaagg ttagaaaaca tttgtgtatc gccaacgctt tcctcaggtt 1320 gtgattgaac cgtatttgca cggtgatgat gtcttggttc ctcaggaatg gccggctgtg 1380 gtgctcggtt atcttgaaat acaggggatt tgttatctcc cagataaaca cgccattctt 1440 tgcttgagct gcagtgatgg gttcccctgt gcgtgaatcc atatccgtgg cagcgtaatg 1500 cgatgaaata tgaacagccg cagtctaggt caacgcgacg acgcctggtc cccttcttgg 1560 ctagcctgtg ctgcactttg attggaacct gagtagagtg ggccctcgag ggtgatgaag 1620 gttgcattct ttaaagccca atgtttgagt gcgctatttt tctcttcatc caagaactct 1680 ttatagctgg aattgtgtcc tggattgcag aggaagatag cgggaattcc gcctttaatt 1740 tgaactggct ttccgtattt ggtatttgat tgccagtccc tttgggcccc catgaattcc 1800 ttaaagtgct ttaggtagtg cggatcaacg tcatcaatga cgttgtacca ggcgtcatta 1860 ctgtagacct ttgggctaag gtctagatgt ccacacaaat agttatgtgg acccaacgag 1920 cgagcccaca tcgtcttacc cgttctactg tcgccctcta tcactatact catgggtcgc 1980 aatggccgcg cagcggcact gacgacgttc tcggcagccc attcttcaag atcttctgga 2040 acttgatcaa aagaagaaga agaaaaagga gaaacataaa cctccaacgg aggtgtaaaa 2100 atcctatcta aatttgcatt taaattatga aattgtaata cataatcttt gggagctttc 2160 tccctcaata tattgagggc cgcagttttg gaccctgaat tgattgcctc ggcatatgcg 2220 tcgttggcag actgctgacc tcctctagct gatcttccat cgacctggaa aactccaaaa 2280 tcaatgaagt ctccgtcttt ctccacatag gccttgacat ctgacgagct tttagctccc 2340 tgaatgttcg gatggaaatg tgctggcctg gttggggaaa cgaggtcgaa gaatctgttg 2400 ttctggcatt tgaatttacc ttcgaattgt atgaggacgt gcagatgagg ttccccattt 2460 tcatgtaatt cgcgagaaac cctgatgaat aatttattag tgggggtgct taggttttga 2520 agttgggaaa gtgcttgttc tttagtgagg gaacactgtg gatatgttaa gaaataattt 2580 ttagcatata tttgaaaacg ttttggagga gccattttga cttggtcaat cggtactcaa 2640 caaacttggc tatgcaatcg gtgaatggta ctcaatatat agtgtgagta ccaaatggca 2700 gatgggtaat tttgaaagaa aattcaaaat tcaaattccg acaaaagcgg ccatccgcaa 2760 taatatt 2767 //