ID DQ658743; SV 1; linear; genomic RNA; STD; VRL; 6179 BP. XX AC DQ658743; XX DT 07-AUG-2006 (Rel. 88, Created) DT 04-APR-2012 (Rel. 112, Last updated, Version 3) XX DE Turnip vein-clearing virus, complete genome. XX KW . XX OS Turnip vein-clearing virus OC Viruses; Riboviria; Virgaviridae; Tobamovirus. XX RN [1] RP 1-6179 RA Lockhart B.E., Swenson A.S., Olszewski N.E., Voth P.; RT "Characterization of a Crucifer-Infecting Tobamovirus Causing Red Ringspot RT of Penstemon"; RL Unpublished. XX RN [2] RP 1-6179 RA Lockhart B.E., Swenson A.S., Olszewski N.E., Voth P.; RT ; RL Submitted (12-MAY-2006) to the INSDC. RL Plant Pathology, University of Minnesota, 1991 Upper Buford Circle, St. RL Paul, MN 55108-6030, USA XX DR MD5; 7b5914dc9a82ed58c07c6033870d5bff. DR RFAM; RF00225; IRES_Tobamo. DR RFAM; RF01072; TMV_UPD-PK3. XX FH Key Location/Qualifiers FH FT source 1..6179 FT /organism="Turnip vein-clearing virus" FT /host="Penstemon sp. cv. 'Husker Red'" FT /lab_host="Penstemon digitalis" FT /mol_type="genomic RNA" FT /country="USA" FT /note="coding regions not determined" FT /db_xref="taxon:29272" XX SQ Sequence 6179 BP; 1759 A; 1157 C; 1567 G; 1696 T; 0 other; ttggacgcaa caggcttggt gaatgatttg gcatctcgtc gcgtttacga caatgcagtc 60 gaggagctga atgctcgttc cagacgtccc aaggttcatt tctccaaggc agtgtctacg 120 gaacagacac tgattgcaac aaacgcatat ccggagttcg agatttcctt tactcatacg 180 caatccgctg tgcactcctt ggccggaggc cttcggtcgc ttgagttgga gtatctcatg 240 atgcaagttc cgttcggttc tctgacgtac gacatcggcg gtaacttttc cgcgcacctt 300 ttcaaagggc gcgattacgt tcactgctgc atgcctaatc tggatgtacg tgacattgct 360 cgccatgaag gacacaagga agctgtttac agttatgtga atcgtttgaa aaggcagcag 420 cgtcctgtgc ctgaatacca gagggcagct ttcaacaact acgctgagaa cccgcacttc 480 gtccattgcg acaaaccttt ccaacagtgt gatttgatga cagcgaatgg caccgacacc 540 tacgctgtag ctctccatag cattaatgat atccctgttg aggagttcgg ttctgcgcta 600 ctcaggaaga atgtgaaaac ttgtttcgcg gcctttcatt tccatgagaa tatgcttcta 660 gattgtgatg cggtcacact cgaagaaatt ggagctactt tccagaagtc cggtgataac 720 ttaagttttt tctttcataa tgagagcact ctcaattata cccacagttt tagtaatata 780 attaagtatg tgtgtaaaac gttctttcct gctagtcaac ggtttgtgta tcataaggag 840 tttttagtta ctagagttaa cacttggtac tgtaagttta cgagagtgga tacttttact 900 cttttccgtg gtgtgtacca taataatgtg gattgcgaag agttttacaa ggctatggac 960 gatgcgtggc actacaaaaa gacgttagca atgcttaatg ctgagaggac catcttcaag 1020 gataacgccg cgttaaactt ttggttcccg aaagtgagag acatggttat cgtccctctc 1080 tttaacgctt ctatcacaac tggtaagatg tctaggagag aggttatggt gaacaaggat 1140 ttcgtttata cggttctaaa tcacataaaa acgtatcaag ctaaggcttt aacttacgca 1200 aatgttctgt cctttgtgga gtctattagg tctagagtta taattaacgg tgtcactgcc 1260 aggtctgaat gggacacaga caaggcaatt ctaggtccat tagcaatgac atttttcctt 1320 ataacaaagt tgggtcatgt gcaggatgaa ataatcctga aaaagttcca gaagtttgac 1380 agaaccacca atgagctgat ttggacaagt ctctgcgatg ccctgatggg ggttattccc 1440 tcggtcaagg agacgcttgt acgtggtggt ttcgtgaaag tagcagaaca agccttagag 1500 ataaaggttc ccgagctata ctgtaccttt gccgacagat tggtactaca gtacaagaag 1560 gcggaggagt tccaatacgt gtgatctttc caaacctcta gaagagtcag agaagtacta 1620 caacgcatta tccgagctat cagtgcttga gaatctcgac tcttttgact tagaggcgtt 1680 taagacttta tgtcagcaga agaatgtgga cccggatatg gcagcaaggg tggtcgtagc 1740 aatcatgaag tctgaattga cgttgccttt caagaaacct acagaagagg aaatctcgga 1800 gtcgctaaaa ccaggagagg ggtcatgtgc agagcataag gaagtgttga gcctacaaaa 1860 tgatgctccg ttcccgtgtg tgaaaaatct agttgaaggt tctgtaccgg cgtatggaat 1920 gtgtcctaag ggtggtggtt tcgacaaatt ggatgtggac attgctgatt tccatctcaa 1980 gagtgtagat gcagttaaaa agggaactat gatgtctgcg gtgtacacag ggtctatcaa 2040 agttcaacaa atgaagaact acatagacta cttaagtgcg tcgctggcag ctacagtctc 2100 aaacctctgc aaggtgctta gagatgttca cggcgttgac ccagagtcac aggagaaatc 2160 tggagtgtgg gatgttagga gaggacgttg gttacttaaa cctaatgcga aaagtcacgc 2220 gtggggtgtg gcagaagacg ccaaccacaa gttggttatt gtgttactca actgggatga 2280 cgggaagccg gtttgtgatg agacatggtt cagggtggcg gtgtcaagcg attccttgat 2340 atattcggat atgggaaaac ttaagacgct cacgtcttgc agtccaaatg gtgagccacc 2400 ggagcctaac gccaaagtaa ttttggtcga tggtgttccc ggttgtggaa aaacgaagga 2460 gattatcgaa aaggtaaact tctctgaaga cttgatttta gtccctggga aagaagcttc 2520 taagatgatc atccggaggg ccaaccaagc tggagtgata agagcggata aggacaatgt 2580 tagaacggtg gattccttct tgatgcatcc ttctagaagg gtgtttaaga ggttgtttat 2640 cgatgaagga ctgatgctgc atacaggttg tgtaaatttc ctactgctgc tatctcaatg 2700 tgacgtcgca tatgtgtatg gggacacaaa gcaaattccg ttcatttgca gagtcgccaa 2760 ctttccgtat ccagcgcatt ttgcaaaact cgtcgctgat gagaaggagg ttagaagagt 2820 tacgctcagg tgcccggctg atgttacgta tttccttaac aagaagtatg acggggcggt 2880 gatgtgtacc agcgcggtag agagatctgt gaaggcagaa gtggtgagag gaaaaggtgc 2940 attgaaccca ataaccttac cgttggaggg taaaattttg accttcacac aagctgacaa 3000 gttcgagtta ctggagaagg gttacaagga tgtgaacact gtgcacgagg tgcaagggga 3060 aacgtacgag aagactgcta ttgtgcgctt gacatcaact ccgttagaga tcatatcgag 3120 tgcatcacct catgttttgg tggcgctgac aagacacact acgcgttgta aatattacac 3180 cgttgtgttg gacccgatgg tgaatgtgat ttcagaaatg gagaagttgt ccaatttcct 3240 tcttgacatg tataaagttg aagcgggggt ccaatagcaa ttacagatcg atgcagtatt 3300 caggggacag caacttgttt gttcagacgc ccaagtcagg agattggcga gatatgcaat 3360 tttactatga cgctcttctt cccggaaaca gtactattct caatgaattt gatgctgtta 3420 cgatgaattt gagggatatt tccttaaacg tcaaagattg cagaatcgac ttctccaaat 3480 ccgtgcaact tcctaaagaa caacctattt tcctcaagcc taaaataaga actgcggcag 3540 aaatgccgag aactgcaggt ttgctggaaa atttggttgc aatgatcaaa agaaacatga 3600 atgcgccgga tttgacaggg acaattgaca ttgaggatac tgcatctctg gtggttgaaa 3660 agttttggga ttcgtatgtt gacaaggaat ttagtggaac gaacgaaatg accatgacaa 3720 gggaaagttt ttctagatgg ctttcgaaac aagagtcatc tacagttggt cagttagcgg 3780 actttaactt tgtggatttg ccggcagtag atgagtacaa gcatatgatc aagagtcaac 3840 caaagcaaaa gttagacttg agtattcaag acgaatatcc tgcattgcag acgatagtct 3900 accattcgaa aaagatcaat gcgattttcg gtcccatgtt ttcagaactt acgaggatgt 3960 tactcgaaag gattgactct tcgaagtttc tgttctacac caggaagaca cctgcacaaa 4020 tagaggactt cttttctgac ctagactcaa cccaggcgat ggaaattctg gaactcgaca 4080 tttcgaagta cgataagtca cagaacgagt tccattgtgc tgtagagtac aagatctggg 4140 aaaagttagg aattgatgag tggctagctg aggtatggaa acaaggacat agaaaaacga 4200 ccttgaaaga ttatacggcc ggaatcaaaa catgtctttg gtatcaaagg aaaagtggtg 4260 atgtgacaac ctttattggt aataccatca tcattgcagc ctgtctgagc tcaatgatcc 4320 caatggacaa agtgataaag gcagcttttt gtggagacga tagcctgatt tacattccta 4380 aaggtttaga cttgcctgac attcaggcgg gcgcgaacct catgtggaac ttcgaggcca 4440 aactcttcag gaagaagtat ggttacttct gtggtcgtta tgttattcac catgatagag 4500 gagctattgt gtattacgat ccgcttaaac taatatctaa gttaggttgt aaacatatta 4560 gagatgttgt tcacttagaa gagttacgcg agtctttgtg tgatgtagct agtaacttaa 4620 ataattgtgc gtatttttca cagttagatg aggccgttgc cgaggttcat aagaccgcgg 4680 taggcggttc gtttgctttt tgtagtataa ttaagtattt gtcagataag agattgttta 4740 gagatttgtt ctttgtttga taatgtcgat agtctcgtac gaacctaagg tgagtgattt 4800 cctcaatctt tcgaagaagg aagagatctt gccgaaggct ctaacgaggt taaagaccgt 4860 gtctattagt actaaggata ttatatctgt caaggagtcg gagactttgt gtgatataga 4920 tttgttaatc aatgtgccat tagataagta tagatatgtg ggtatcctag gagctgtttt 4980 taccggagag tggctggtgc cagacttcgt taaaggtgga gtgacgataa gtgtgataga 5040 caagcgtctg gtgaactcaa aggagtgcgt gatcggtacg tacagagccg cagccaagag 5100 taagaggttc cagttcaaat tggttccaaa ttactttgtg tccactgtgg acgcaaagag 5160 gaaaccgtgg caggttcatg ttcgtataca agacttgaag attgaggcgg gttggcagcc 5220 gttagctcta gaagtagttt cagttgctat ggtcaccaat aacgttgtca tgaagggttt 5280 gagggaaaag gtcgtcgcaa taaatgatcc ggacgtcgaa ggtttcgaag gtgtggttga 5340 cgaattcgtc gattcggttg cagcatttaa agcggttgac aatttcagga agaggaaaaa 5400 gaaggttgaa gaaagggatg tagtaagtaa gtataaatat agaccggaga aatacgccgg 5460 tcctgattcg tttaatttaa aagaagaaaa tgtcttacaa cattacaaac ccgaatcagt 5520 accagtactt cgcagcggtg tgggcagagc ccataccaat gcttaatcag tgcatatcgg 5580 cgttgtcgca atcgtaccaa acacaagctg cgagagacac tgttagacag caattctcaa 5640 acttgttaag tgcggttgtg acgccgagcc agcggttccc agatacaggg tcccgggtgt 5700 atgttaactc ggctgttata aagccgttgt acgaggctct tatgaagtcc tttgatacta 5760 gaaataggat catagagacg gaagaggagt cacgcccatc agcttccgaa gtagctaatg 5820 caacacagcg tgttgatgac gcgaccgttg ccattagaag tcaaattcag cttttgctga 5880 gtgagctttc taatggacat ggttatatga atagggcaga gttcgaggct ttattgccat 5940 ggactactgc gcctgctact aaggcgtagt gcgcacgata gcgcatagtg tttttctctc 6000 cacttaaatc gaagagataa acttacggtg taattccgtg agagtggcgt aaaccaaatt 6060 acgcaatgtt ttgggttcca ttaaaatcga aaccccttat ttcctggatc acctgttaac 6120 gcacgtttga cgtgtattac agtgggaata agtaaaagtg agaggttcgt acgagacta 6179 //