ID DQ647661; SV 1; linear; genomic RNA; STD; VRL; 2747 BP. XX AC DQ647661; XX DT 02-JUL-2006 (Rel. 88, Created) DT 02-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate Sc-UD1 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2747 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT "Sequence analysis of Sugarcane mosaic virus infecting sugarcane in RT Thailand"; RL Unpublished. XX RN [2] RP 1-2747 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT ; RL Submitted (12-MAY-2006) to the INSDC. RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn RL Pathom 73140, Thailand XX DR MD5; beaf572c4bf6812061387d8c88fe8507. XX FH Key Location/Qualifiers FH FT source 1..2747 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="Sc-UD1" FT /serotype="SCMV" FT /mol_type="genomic RNA" FT /country="Thailand:Udonthani province" FT /db_xref="taxon:12224" FT CDS <1..>2747 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:Q0ZAY0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q0ZAY0" FT /protein_id="ABG37683.1" FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWERGWHYNPN FT LISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQCKVTETWLTEHIQDNLQVVAKCPGQ FT LVTKHVVKGPCPHFQLYLSTHDEAKSYFSPLLGKYDKSRLNRAAFIKDLSKYAKPIYVG FT EINYEIFDKAVERVISILRSVGMQQCMYVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD FT FSNEDRAEIVMRSCERIYNGQLGVWNGSLKAEIRPIEKTILNKTRTFTAAPLETLLGGK FT VCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL FT INAVLHVRLHFMEEWELGAQMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN FT TLMVIIAFNYAMLSSGIPEDKIDNCCRMFANGDDLLLAVHPDYEYILDGFQNHFKKPLG FT LNFEFTSRTKGTNQSYGFMSTQGVKVEGIYIPKLERERIVAILEWDRSNLPEHRLEAIC FT AAMVEAWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEE FT IEKYFRQFVKDLPGYVEDYNEEVIHQSGQADAGKQGGNGAQGGTPPAGSGGTGPGTQGN FT GGQTGFQGSGGQQRSGGGTWSSSSWKQRRRSDRRLNGTAGQRDKDVDAGSAGKISVPKL FT KAMSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATRKEFIDWYDAIKKEYEIDDT FT PNDSRHEWSDGLVHRKWLLTKHKRKLDDDGWGEQRVFPLKPVIENASPTFRQVMHHFSD FT AAEAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAA FT VRGSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH" FT mat_peptide <1..239 FT /product="NIa-protease protein" FT mat_peptide 240..1808 FT /product="NIb polymerase protein" FT mat_peptide 1809..2747 FT /product="coat protein" XX SQ Sequence 2747 BP; 897 A; 549 C; 662 G; 639 T; 0 other; tagttggaat acacagtctt gcatcaacga gtggaaacac aaacttcttt gttgcaatgc 60 ccgagaactt caatgaatat atatccaatc ttgtgcaaac gaataagtgg gaaaggggat 120 ggcattacaa cccaaatctc atttcttggt gtggtctgaa cctagtcgat tcagcaccta 180 aaggattatt caaaacgtca aagcttgttg aagatctgga tatgagtgtt gaagaacaat 240 gcaaggtgac agaaacatgg ttgacggaac acatccaaga taacctgcag gtcgtcgcaa 300 agtgtccagg ccaactcgta acaaagcatg ttgtcaaagg cccatgtcca cacttccaac 360 tatatttatc tacacacgat gaagcaaagt cgtatttctc accattgctt ggaaagtatg 420 acaagagtag gttgaacaga gcagcattta tcaaagatct ctcaaagtat gcaaagccaa 480 tttacgttgg agagatcaat tacgaaatct ttgataaagc agttgagcga gttataagca 540 tcctcagaag tgtaggaatg caacagtgca tgtacgtgac ggacgaggaa gaaattttca 600 attcgttaaa catgaacgca gccgtaggtg cactctacac aggaaagaag aaagactatt 660 tcaaagattt ctcaaatgag gatagagctg aaattgtcat gcgatcatgc gagcgcatct 720 acaacggaca attaggtgtg tggaatgggt cactcaaagc tgaaatacga cctatagaga 780 aaaccatact gaacaagaca cgcactttca cagcagcacc attggaaact ctacttggtg 840 ggaaagtatg tgtggacgat ttcaataatc aattttactc acaccatctt gaaggcccgt 900 ggaccgtagg aatcacaaaa ttttatggag gatggaaccg acttttggag aagctgccag 960 aggggtggat ttactgcgat gcagatggat ctcagttcga cagctcacta actccatatc 1020 ttattaatgc tgtactgcac gttcgcttac atttcatgga agaatgggag ttgggagccc 1080 aaatgttgcg aaacttatac acagagattg tttacacgcc aatcgcaaca cctgatgggt 1140 ctgtcatcaa gaagtttaaa ggaaataata gtgggcaacc atctacagtc gtcgacaata 1200 cgctcatggt tatcatagca tttaattatg caatgttatc aagtggcatt cctgaagaca 1260 aaattgacaa ctgctgtaga atgtttgcaa acggtgacga cttactcttg gcagtgcatc 1320 cggattacga atacatattg gatggatttc aaaatcattt taagaaaccc ttgggtctta 1380 actttgagtt cacatcgagg acaaaaggga caaatcagag ttatgggttc atgtcaacac 1440 aaggagtcaa agtggaaggt atctacatac caaaactcga aagggaaaga atagtcgcaa 1500 tccttgaatg ggaccgatcg aacttgcctg agcatcgtct tgaagctatc tgtgcagcca 1560 tggttgaagc atggggttac ccagatttag ttcatgaaat tcggaaattt tatgcgtggc 1620 ttcttgaaat gcaacccttc gcgaacctgg caaaggaagg catggcgcca tacatagcag 1680 aaacagcact ccgcaacctc taccttggaa caggcatcaa agaagaagaa attgaaaaat 1740 attttagaca gtttgtcaag gatcttcctg gatacgtaga agattacaat gaagaagtta 1800 ttcatcaatc tggtcaagct gacgcaggga aacagggtgg taacggcgct caaggaggca 1860 caccaccagc aggaagtgga ggcactggac ctggcactca aggcaatggg ggtcagacgg 1920 gatttcaagg aagtggtggt caacaaaggt ccggtggggg cacctggtca agtagcagct 1980 ggaaacaacg gcggaggtca gacaggaggc tcaatgggac agctggtcag agagataagg 2040 acgttgacgc aggctcggct ggaaagatat ccgtaccaaa gcttaaagcc atgtcaaaga 2100 aaatgcgctt gccaaaggca aaaggaaaag acgtcttgca tttggacttt ttgttgacat 2160 acaaaccaca acagcaggac atatcgaaca caagagcaac aaggaaggag tttatagatt 2220 ggtacgacgc cataaagaag gagtatgaga tcgatgatac accaaatgac agtcgtcatg 2280 agtggtctga tggtctggtg catcgaaaat ggttgctcac caaacataaa cggaaattgg 2340 acgatgatgg atggggagaa caaagagttt tcccactaaa accagttatt gaaaacgcat 2400 ctccaacttt tcgacaagtt atgcatcatt tcagtgatgc agctgaagcg tatatagaat 2460 acagaaattc tactgagcga tacatgccaa gatacggact tcagcgaaat ctcaccgact 2520 atagcttagc gcggtatgct tttgatttct atgaaatgac ttcacgcaca ccagctagag 2580 ctaaggaagc ccacatgcag atgaaagccg cagcagttcg tggttcaaac acacgactgt 2640 tcggcttgga cggaaatgtc ggcgagactc aggagaatac agagagacac acagctggcg 2700 acgttagtcg caatatgcac tctctgttgg gagtgcagca acaccac 2747 //