ID DQ647660; SV 1; linear; genomic RNA; STD; VRL; 2744 BP. XX AC DQ647660; XX DT 02-JUL-2006 (Rel. 88, Created) DT 02-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate Mz-TK1 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2744 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT "Sequence analysis of Sugarcane mosaic virus infecting maize in Thailand"; RL Unpublished. XX RN [2] RP 1-2744 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT ; RL Submitted (12-MAY-2006) to the INSDC. RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn RL Pathom 73140, Thailand XX DR MD5; dbd3913e1712f0be9dd71cf748cff539. XX FH Key Location/Qualifiers FH FT source 1..2744 FT /organism="Sugarcane mosaic virus" FT /host="maize" FT /isolate="Mz-TK1" FT /serotype="SCMV-MDB" FT /mol_type="genomic RNA" FT /country="Thailand:Tak province" FT /db_xref="taxon:12224" FT CDS <1..2744 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:Q0ZAY1" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q0ZAY1" FT /protein_id="ABG37682.1" FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWERGWHYNPN FT LISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQCKVTETWLTEHIQDNLQVVAKCPGQ FT LVTKHVVKGPCPHFQLYLSTHDEAKSYFSPLLGKYDKSRLNRAAFIKDLSKYAKPIYVG FT EINYEIFNKAVERVISILRSVGMQQCMYVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD FT FSNEDKAEIVMRSCERIYNGQLGVWNGSLKAEIRPIEKTILNKTRTFTAAPLETLLGGK FT VCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL FT INAVLHIRLHFMEEWELGAQMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN FT TLMVIIAFNYAMLSSGIPGDKIDDYCRMFANGDDLLLAVHPDYEYILDGFQNHFGNLGL FT NFEFTSRTKDKSELWFMSTQGVKCEGIYIPKLERERIVAILEWDRSNLPEHRLEAICAA FT MVEAWGYSDLVYEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEEIE FT KYFKQFVKDLPGYVEDYNEEVIHQSGQVDAGRQGGSGAQGNTPPAGSGGTGSGTQGNGG FT QTGSQGSGGQQGSGGSTGQGAAGNNGGGQTGGSNGTAGQRDKDVDAGSAGKISVPKLKA FT MSKKTRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDRWYDAIKKEYEIDDTQM FT TVVMSGLMVWCIENGCSPNINGNWTMMDGEEQRVFPLKPVIENASPTFRQIMHHFSDAA FT EAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAAVR FT GSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH" FT mat_peptide <1..239 FT /product="NIa-protease protein" FT mat_peptide 240..1802 FT /product="NIb polymerase protein" FT mat_peptide 1803..2741 FT /product="coat protein" XX SQ Sequence 2744 BP; 904 A; 547 C; 657 G; 635 T; 1 other; tagttggaat acacagtctt gcatcaacga gtggaaatac aaacttcttc gttgcaatgc 60 ccgagaactt taatgaatat atatctaatc ttgtgcaaac gaataagtgg gaaaggggat 120 ggcactacaa cccaaatctc atttcatggt gtggtttgaa cctagtcgat tcagcaccta 180 aaggattatt taaaacgtca aagcttgttg aagatctgga tatgagtgtt gaagaacaat 240 gcaaggtgac agaaacatgg ttgacggaac acatccaaga taacctgcag gtcgtcgcaa 300 agtgtccagg ccaactcgta acaaagcatg ttgtcaaagg cccatgtcca cacttccaac 360 tatatttatc cacacacgat gaagcaaagt cgtatttttc accattgctt ggaaagtatg 420 acaagagtag gttgaacagg gcagcattta tcaaagatct ctcaaagtat gcaaagccga 480 tttacgttgg agagatcaat tacgaaatct ttaataaagc agttgagcga gttataagca 540 tcctcagaag cgtaggaatg caacagtgca tgtacgtgac ggacgaagaa gaaattttca 600 attcgttaaa catgaacgca gccgtaggtg cactctacac aggaaagaag aaagactatt 660 tcaaagattt ctcaaatgag gataaagctg aaatcgtcat gcgttcatgt gagcgcatct 720 acaacggaca attaggtgta tggaatggat cactcaaagc tgaaatacga cctatagaga 780 aaaccatact gaacaagaca cgcactttta cagcagcacc attggaaact ttacttggtg 840 ggaaagtatg tgtggacgat ttcaataatc aattttactc acaccatctt gaaggcccat 900 ggaccgtagg aatcacaaaa ttttatggag gatggaaccg acttttggag aagttgccag 960 aagggtggat ttactgcgat gcagatggat ctcagttcga cagctcacta actccatatc 1020 ttattaatgc tgtactgcac attcgattac atttcatgga agaatgggag ttgggagccc 1080 aaatgttgcg aaatttgtac acagagattg tttacacgcc aatcgcaaca cctgatgggt 1140 ctgtcatcaa gaagtttaaa ggaaataata gtgggcaacc atctacagtc gtcgacaata 1200 cgctcatggt tattatagca tttaattatg caatgttatc aagtggcatt cctggagaca 1260 aaattgacga ctactgtaga atgtttgcaa acggtgacga cttactcttg gcagtgcatc 1320 cggattacga atatatattg gacggatttc aaaatcattt tggaaatctt ggccttaact 1380 tcgagttcac atcgaggaca aaggacaaat cagagttatg gttcatgtca acacaaggag 1440 tcaagtgtga aggtatctac ataccaaaac tcgaaaggga aagaatagtc gcaatccttg 1500 aatgggaccg atcgaacctg cctgagcatc gtcttgaagc tatttgtgca gccatggtag 1560 aagcatgggg ttactcagat ctagtttatg aaatccggaa attttatgcg tggcttctcg 1620 aaatgcaacc cttcgcgaat ctggcgaagg aaggtatggc gccatacata gcagaaacag 1680 cactccgcaa cctttacctt ggaacaggca tcaaagaaga agaaattgaa aaatatttta 1740 agcagtttgt caaggatctt cctggatacg tagaagatta caatgaagaa gtgattcatc 1800 agtctggcca agttgatgca gggagacaag gcggtagcgg cgctcaagga aacacacccc 1860 cagcaggaag tggaggcact ggatctggca ctcagggcaa cgggggtcag acgggatccc 1920 aaggaagtgg tggtcaacaa gggtccggtg ggagcactgg tcaaggagca gctggaaaca 1980 acggcggagg ccagacagga ggctctaatg ggacagctgg tcaaagagat aaggacgttg 2040 acgcaggctc ggctggaaag atatccgtac caaagcttaa agccatgtca aagaaaacgc 2100 gcttgccaaa ggcaaaagga aaagacgtct tgcatttgga ctttttattg acatacaagc 2160 cacaacagca agacatatcg aacacaagag caaccaagga agagttcgat agatggtacg 2220 acgccataaa gaaggagtac gagatcgatg atacacaaat gacagttgtt atgagtggtc 2280 tgatggtctg gtgcatcgaa aatggttgct caccaaatat aaacggaaat tggacgatga 2340 tggatggaga agaacaacga gtttttccat taaaaccagt catcgaaaac gcatctccaa 2400 ctttccgaca aataatgcac cactttagtg atgcagctga agcgtacata gagtatagaa 2460 actctacaga gcgatatatg ccaagrtacg gacttcagcg aaatctcacc gactatagcc 2520 tagcacggta tgcatttgat ttctatgaaa tgacctcacg cacaccagct agagctaagg 2580 aagcccacat gcagatgaaa gccgcagcag ttcgaggttc aaatacacga ctattcggtc 2640 tggacggaaa tgtcggcgag actcaggaga atacagagag acacacagct ggcgacgtta 2700 gtcgcaacat gcactctctg ttgggagtgc agcagcacca ctag 2744 //