ID DQ647659; SV 1; linear; genomic RNA; STD; VRL; 2955 BP. XX AC DQ647659; XX DT 02-JUL-2006 (Rel. 88, Created) DT 02-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate Mz-NM1 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2955 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT "Sequence analysis of Sugarcane mosaic virus infecting maize in Thailand"; RL Unpublished. XX RN [2] RP 1-2955 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT ; RL Submitted (12-MAY-2006) to the INSDC. RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn RL Pathom 73140, Thailand XX DR MD5; c5546c05ea3fb4424cf5738897902ec6. XX FH Key Location/Qualifiers FH FT source 1..2955 FT /organism="Sugarcane mosaic virus" FT /host="maize" FT /isolate="Mz-NM1" FT /serotype="SCMV-MDB" FT /mol_type="genomic RNA" FT /country="Thailand:Nakhon Ratchasima province" FT /db_xref="taxon:12224" FT CDS <1..2744 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:Q0ZAY2" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q0ZAY2" FT /protein_id="ABG37681.1" FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWERGWHYNPN FT LISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQCKVTETWLTEHIQDNLQVVAKCPGQ FT LVTKHVVKGPCPHFQLYLSTHDEAKSYFSPLLGKYDKSRLNRAAFIKDLSKYAKPIYVG FT EINYEIFDKAVERVISILRSVGMQQCMYVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD FT FSNEDRAEIVMRSCERIYNGQLGVWNGSLKAEIRPIEKTILNKTRTFTAAPLETLLGGK FT VCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL FT INAVLHVRLHFMEEWELGAQMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN FT TLMVIIAFNYAMLSSGIPEDKIDNCCRMFANGDDLLLAVHPDYEYILDGFQNHFRNLGL FT NFEFTSRTKDKSELWFMSTQGVKCKGIYIPKLERERIVAILEWDRSNLPEHRLEAICAA FT MVEAWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEEIE FT KYFRQFVKDLPGYVEDYNEEVIHQSGQADAGRQGGSGAQGGTPPAGIGGTGPGTQGNGG FT QTGFQGSGGQQGSGGGTGQVAAGNNGGGQTGGSNGTAGQRDKDVDAGSAGKISVPKLKA FT MSKKMRLPKAKGKDVLHMDFLLTYKPQQQDISNTRATKEEFDRWYDAIKKEYEIDDTQM FT TVVMSGLMVWCIENGCSPNINGNWTMMDGDEQRVFPLKPVIENASPTFRQVMHHFSDAA FT EAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAAVR FT GSNTRLFGLDGNVGETQENTERHTAGDVSRNMHTLLGVQQHH" FT mat_peptide <1..239 FT /product="NIa-protease protein" FT mat_peptide 240..1802 FT /product="NIb polymerase protein" FT mat_peptide 1803..2741 FT /product="coat protein" FT 3'UTR 2745..2955 XX SQ Sequence 2955 BP; 940 A; 590 C; 715 G; 710 T; 0 other; tagttggaat acacagtctt gcatcaacga gtggaaacac aaacttcttt gttgcaatgc 60 ccgagaactt caatgaatat atatctaatc ttgtgcaaac gaataaatgg gaaaggggat 120 ggcattacaa cccaaatctc atttcttggt gtggtctgaa cctagtcgat tcagcaccta 180 aaggattatt caaaacgtca aagcttgttg aagatctgga tatgagtgtt gaagaacaat 240 gcaaggtgac agaaacatgg ttgacggaac acatccaaga taacctgcag gtcgtcgcaa 300 agtgtccagg ccaactcgta acaaagcatg ttgtcaaagg cccatgtcca cacttccaac 360 tatatttatc tacacacgat gaagcaaagt cgtatttctc accattgctt ggaaagtatg 420 acaagagtag gttgaacaga gcagcattta tcaaagatct ctcaaagtat gcaaagccaa 480 tttacgttgg agagatcaat tacgaaatct ttgataaagc agttgagcga gttataagca 540 tcctcagaag tgtaggaatg caacagtgca tgtacgtgac ggacgaggaa gaaattttca 600 attcgttaaa catgaacgca gccgtaggtg cactctacac aggaaagaag aaagactatt 660 tcaaagattt ctcaaatgag gatagagctg aaattgtcat gcgatcatgt gagcgcatct 720 acaacggaca attaggtgtg tggaatgggt cactcaaagc tgaaatacga cctatagaga 780 aaaccatact gaacaagaca cgcactttca cagcagcacc attggaaact ctacttggtg 840 ggaaagtatg tgtggacgat ttcaataatc aattttactc acaccatctt gaaggcccgt 900 ggaccgtagg aatcacaaaa ttttatggag gatggaaccg acttttggag aagctgccag 960 aggggtggat ttactgcgat gcagatggat ctcagttcga cagctcacta actccatatc 1020 ttattaatgc tgtactgcac gttcgcttac atttcatgga agaatgggag ttgggagccc 1080 aaatgttgcg aaacttatac acagagattg tttacacgcc aatcgcaaca cctgatgggt 1140 ctgtcatcaa gaagtttaaa ggaaataata gtgggcaacc atctacagtc gtcgacaata 1200 cgctcatggt tatcatagca tttaattatg caatgttatc aagtggcatt cctgaagaca 1260 aaattgacaa ctgctgtaga atgtttgcaa acggtgacga cttactcttg gcagtgcatc 1320 cggattacga atacatattg gatggatttc aaaatcattt tagaaacctt ggccttaact 1380 ttgagttcac atcgaggaca aaggacaaat cagagttatg gttcatgtca acacaaggag 1440 tcaagtgtaa aggtatctac ataccaaaac tcgaaaggga aagaatagtc gcaatccttg 1500 aatgggaccg atcgaacttg cctgagcatc gtcttgaagc tatctgtgca gccatggttg 1560 aagcatgggg ttacccagat ttagttcatg aaattcggaa attttatgcg tggcttcttg 1620 aaatgcaacc cttcgcgaac ctggcaaagg aaggcatggc gccatacata gcagaaacag 1680 cactccgcaa cctctacctt ggaacaggca tcaaagaaga agaaattgaa aaatatttta 1740 gacagtttgt caaggatctt cctggatacg tagaagatta caatgaagaa gttattcatc 1800 aatctggtca agctgacgca gggagacagg gtggtagcgg cgctcaagga ggcacaccac 1860 cagcaggaat tggaggcact ggacctggca ctcaaggcaa tgggggtcag acgggatttc 1920 aaggaagtgg tggtcaacaa gggtccggtg ggggcactgg tcaagtagca gctggaaaca 1980 acggcggagg tcagacagga ggctctaatg ggacagctgg tcagagagat aaggacgttg 2040 acgcaggctc ggctggaaag atatccgtac caaagcttaa agccatgtcc aagaaaatgc 2100 gcttgccaaa ggcaaaagga aaagacgtct tgcatatgga ctttttgttg acatacaaac 2160 cacaacagca ggacatatcg aacacaagag caactaagga agagtttgat agatggtacg 2220 acgccataaa gaaggagtat gagatcgatg atacacaaat gacagtcgtc atgagtggtc 2280 tgatggtctg gtgcatcgaa aatggttgct caccaaacat aaacggaaat tggacgatga 2340 tggatgggga tgaacaaaga gttttcccac taaaaccagt tattgaaaac gcatctccaa 2400 cttttcgaca agttatgcat catttcagtg atgcagctga agcgtatata gaatacagaa 2460 attctactga gcgatacatg ccaagatacg gacttcagcg aaatctcacc gactatagct 2520 tagcgcggta tgcttttgat ttctatgaaa tgacttcacg cacaccagct agagctaagg 2580 aagcccacat gcagatgaaa gccgcagcag ttcgtggttc aaacacacga ctgttcggct 2640 tggacggaaa tgtcggcgag actcaggaga atacagagag acacacagct ggcgacgtta 2700 gtcgcaatat gcacactctg ttgggagtgc agcaacacca ctagtctcct ggaaaccctg 2760 tttgcagtac ctataatata tactaatata tagtacgttg gtgaggcttt gcctcggttt 2820 tactatctta ttatgtatgt atttacagcg tgaaccagtc tgcagcatgc agggttggac 2880 ccagcgtgtt ctggtgtagc gtgtactagc gtcgagccat gagacggact gcactgggtg 2940 tggctatgcc acttg 2955 //