ID DQ647654; SV 1; linear; genomic RNA; STD; VRL; 2601 BP. XX AC DQ647654; XX DT 02-JUL-2006 (Rel. 88, Created) DT 02-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate Sc-PJ1 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2601 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT "Sequence analysis of Sugarcane mosaic virus infecting sugarcane in RT Thailand"; RL Unpublished. XX RN [2] RP 1-2601 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT ; RL Submitted (12-MAY-2006) to the INSDC. RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn RL Pathom 73140, Thailand XX DR MD5; d589c76f02d2cf29528228ecfcdca82e. XX FH Key Location/Qualifiers FH FT source 1..2601 FT /organism="Sugarcane mosaic virus" FT /host="sugarcane" FT /isolate="Sc-PJ1" FT /serotype="SCMV" FT /mol_type="genomic RNA" FT /country="Thailand:Prachuap Khiri Khan province" FT /db_xref="taxon:12224" FT CDS <1..>2601 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:Q0ZAY7" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q0ZAY7" FT /protein_id="ABG37676.1" FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWERGWHYNPN FT LISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQRKVTETWLTEHIQDNLQVVAKCPGQ FT LVTKHVVKGPCPHFQLYLSTHDEAKSYFSLLLGKYDKSRLNRAAFIKDLSKYAKPIYVG FT EINYEIFDKAVERVISILRSVGMQQCMCVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD FT FSNEDRAEIVMRSCERIYNGQLGVWNGSLKAEIRPIEKTILNKTRTFTAAPLETLLGGK FT VCVXDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL FT INAVLHVRLHFMEEWELGARMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN FT TLMVIIAFNYAMLSSGIPEDKIDNCCRMFANGDDLLLAVHPDYEYILDGFQNHFRNLGL FT NFEFTSRTKDKSELWFMSTQGVKCEGIYIPKLERERIVAILEWDRSNLPEHRLEAICAA FT MVEAWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEEIE FT KYFRQFVKDLPGYVEDYNEEVIHQSGQADAGRQGGSGAQGGTPPAGIGGTGPGTQGNGG FT QTGFQGSGGQQGSGGGTWSSSSWKQRRRSDRRLNGTAGQRDKDVDAGSAGKISVPKLKA FT MSKKMRLPKAKGKEVLHLDSLLTYKPQQQDISNTRATKEEFDRWYDAIKKEYEIDDTPN FT DSRHEWSDGLVHRKWLLTKHKRKLDDDGWGEQRVFPLKPVIENASPTFRQVMHHFSDAA FT EAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEATHKIS" FT mat_peptide <1..239 FT /product="NIa-protease protein" FT mat_peptide 240..1802 FT /product="NIb polymerase protein" FT mat_peptide 1803..>2601 FT /product="coat protein" XX SQ Sequence 2601 BP; 849 A; 511 C; 620 G; 618 T; 3 other; tagttggaat acacagtctt gcatcaacga gtggaaacac aaacttcttt gttgcaatgc 60 ccgagaactt caatgaatat atatctaatc ttgtgcaaac gaataagtgg gaaaggggat 120 ggcattacaa cccaaatctc atttcttggt gtggtctgaa cctagtcgat tcagcaccta 180 aaggattatt caaaacgtca aagcttgttg aagatctgga tatgagtgtt gaagaacaac 240 gcaaggtgac agaaacatgg ttgacggaac acatccaaga taacctgcag gtcgtcgcaa 300 agtgtccagg ccaactcgta acaaagcatg ttgtcaaagg cccatgtcca cacttccaat 360 tatatttatc tacacacgat gaagcaaagt cgtatttctc actattgctt ggaaagtatg 420 acaagagtag gttgaacaga gcagcattta tcaaagatct ctcaaagtat gcaaagccaa 480 tttacgttgg agagatcaat tacgaaatct ttgataaagc agttgagcga gttataagca 540 tcctcagaag tgtaggaatg caacagtgca tgtgcgtgac ggacgaggaa gaaattttca 600 attcgttaaa catgaacgca gccgtaggtg cactttacac aggaaagaag aaagactatt 660 tcaaagattt ctcaaatgag gatagagctg aaattgtcat gcgatcatgt gagcgcatct 720 acaacggaca attaggtgtg tggaatgggt cactcaaagc tgaaatacga cctatagaga 780 aaaccatact gaacaagaca cgcactttca cagcagcacc aytrgaaact ctacttggtg 840 ggaaagtatg tgtggwcgat ttcaataatc aattttactc acaccatctt gaaggcccgt 900 ggaccgtagg aatcacaaaa ttttatggag gatggaaccg acttttggag aagctgccag 960 aggggtggat ttactgcgat gcagatggat ctcagttcga cagctcacta actccatatc 1020 ttattaatgc tgtactgcac gttcgcttac atttcatgga agaatgggag ttgggagccc 1080 gaatgttgcg aaacttatac acagagattg tttacacgcc aatcgcaaca cctgatgggt 1140 ctgtcatcaa gaagtttaaa ggaaataata gtgggcaacc atctacagtc gtcgacaata 1200 cgctcatggt tatcatagca tttaattatg caatgttatc aagtggcatt cctgaagaca 1260 aaattgacaa ctgctgtaga atgtttgcaa acggtgacga cttactcttg gcagtgcatc 1320 cggattacga atacatattg gatggatttc aaaatcattt tagaaacctt ggccttaact 1380 ttgagttcac atcgaggaca aaggacaaat cagagttatg gttcatgtca acacaaggag 1440 tcaagtgtga aggtatctac ataccaaaac tcgaaaggga aagaatagtc gcaatccttg 1500 aatgggaccg atcgaacttg cctgagcatc gtcttgaagc tatctgtgca gccatggttg 1560 aagcatgggg ttacccagat ttagttcatg aaattcggaa attttatgcg tggcttcttg 1620 aaatgcaacc cttcgcgaac ctggcaaagg aaggcatggc gccatacata gcagaaacag 1680 cactccgcaa cctctacctt ggaacaggca tcaaagaaga agaaattgaa aaatatttta 1740 gacagtttgt caaggatctt cctggatacg tagaagatta caatgaagaa gttattcatc 1800 aatctggtca agctgacgca gggagacagg gtggtagcgg cgctcaagga ggcacaccac 1860 cagcaggaat tggaggcact ggacctggca ctcaaggcaa tgggggtcag acgggatttc 1920 aaggaagtgg tggtcaacaa gggtccggtg ggggcacctg gtcaagtagc agctggaaac 1980 aacggcggag gtcagacagg aggctcaatg ggacagccgg tcagagagat aaggacgttg 2040 acgcaggctc ggctggaaag atatccgtac caaagcttaa agccatgtca aagaaaatgc 2100 gcttgccaaa ggcaaaagga aaagaagtct tgcatttgga ttctttgttg acatacaaac 2160 cacaacagca ggacatatcg aacacaagag ccactaagga agagtttgat agatggtacg 2220 acgccataaa gaaggagtat gagatcgatg atacaccaaa tgacagtcgt catgagtggt 2280 ctgatggtct ggtgcatcga aaatggttgc tcaccaaaca taaacggaaa ttggacgatg 2340 atggatgggg agaacaaaga gttttcccac taaaaccagt tattgaaaac gcatctccaa 2400 cttttcgaca agttatgcat catttcagtg atgcagctga agcgtatata gaatacagaa 2460 attctactga gcgatacatg ccaagatacg gacttcagcg aaatctcacc gactatagct 2520 tagcgcggta tgcttttgat ttctatgaaa tgacttcacg cacaccagct agagctaagg 2580 aagccacgca taaaatttcc g 2601 //