ID DQ647651; SV 1; linear; genomic RNA; STD; VRL; 2995 BP. XX AC DQ647651; XX DT 02-JUL-2006 (Rel. 88, Created) DT 02-JUL-2006 (Rel. 88, Last updated, Version 1) XX DE Sugarcane mosaic virus isolate Mz-SB1 polyprotein gene, partial cds. XX KW . XX OS Sugarcane mosaic virus OC Viruses; Riboviria; Potyviridae; Potyvirus. XX RN [1] RP 1-2995 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT "Sequence analysis of Sugarcane mosaic virus infecting maize in Thailand"; RL Unpublished. XX RN [2] RP 1-2995 RA Reanwarakorn K., Warawichanee K., Klinkong S.; RT ; RL Submitted (12-MAY-2006) to the INSDC. RL Plant Pathology, Kasetsart University, Malaiman, Kamphaeng Saen, Nakhorn RL Pathom 73140, Thailand XX DR MD5; 03eb08877b676fd2ff5f61e7454e3def. XX FH Key Location/Qualifiers FH FT source 1..2995 FT /organism="Sugarcane mosaic virus" FT /host="maize" FT /isolate="Mz-SB1" FT /serotype="SCMV-MDB" FT /mol_type="genomic RNA" FT /country="Thailand:Sara Buri province" FT /db_xref="taxon:12224" FT CDS <1..2744 FT /codon_start=3 FT /product="polyprotein" FT /db_xref="GOA:Q0ZAZ0" FT /db_xref="InterPro:IPR001205" FT /db_xref="InterPro:IPR001592" FT /db_xref="InterPro:IPR001730" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR009003" FT /db_xref="UniProtKB/TrEMBL:Q0ZAZ0" FT /protein_id="ABG37673.1" FT /translation="VGIHSLASTSGNTNFFVAMPENFNEYISNLVQTNKWEKGWHYNPN FT LISWCGLNLVDSAPKGLFKTSKLVEDLDMSVEEQCKVTETWLTEHIQDNLQVVAKCPGQ FT LVTKHVVKGPSPHFQLYLSMHDKAKLYFSPLLGKYDKSRLNRAAFIKDLSKYAKPIYIG FT EINYEIFDKAVDRVISILRSVGMLQCTYVTDEEEIFNSLNMNAAVGALYTGKKKDYFKD FT FSNDDKAEIIMRSCERIYNGQLGVWNGSLKAEIRPIEKTILNKTRTFTAAPLETLLGGK FT VCVDDFNNQFYSHHLEGPWTVGITKFYGGWNRLLEKLPEGWIYCDADGSQFDSSLTPYL FT INAVLHIRLHFMEEWELGAQMLRNLYTEIVYTPIATPDGSVIKKFKGNNSGQPSTVVDN FT TLMVIIAFNYAMLSSGIPEDKIDDCCRMFANGDDLLLAVHPDYEYILDGFQNHFGNLGL FT NFEFTSRTKDKSELWFMSTQGVKCEGIYIPKLERERIVAILEWDRSNLPEHRLEAICAA FT MVESWGYPDLVHEIRKFYAWLLEMQPFANLAKEGMAPYIAETALRNLYLGTGIKEEEIE FT KYFRQFVKDLPGYVEDYNEEVIHQSGQVDAGRQGGSGAQGGTPPAGSGGTGSGTQGNGG FT QTGSQRSGGQQGSGGGTGQGAAGNNGGGQTGGSSGTAGQRDKDVDAGSAGKIAVPKLKA FT MSKKMRLPKAKGKDVLHLDFLLTYKPQQQDISNTRATKEEFDRWYDAIKKEYEIDDTQM FT TVVMSGLMVWCIENGCSPNINGNWTMMDGDEQRVFPLKPVIENASPTFRQVMHHFSDAA FT EAYIEYRNSTERYMPRYGLQRNLTDYSLARYAFDFYEMTSRTPARAKEAHMQMKAAAVR FT GSNTRLFGLDGNVGETQENTERHTAGDVSRNMHSLLGVQQHH" FT mat_peptide <1..239 FT /product="NIa-protease protein" FT mat_peptide 240..1802 FT /product="NIb polymerase protein" FT mat_peptide 1803..2741 FT /product="coat protein" FT 3'UTR 2745..2995 XX SQ Sequence 2995 BP; 954 A; 576 C; 726 G; 739 T; 0 other; tagttggaat acacagtctt gcatcaacaa gtggaaatac gaactttttc gttgcaatgc 60 ccgagaactt caatgaatat atatctaatc tcgtgcaaac gaataagtgg gaaaagggat 120 ggcattacaa cccaaatctt atttcatggt gtggtctaaa cctagttgat tcagcaccta 180 aaggattgtt taaaacatca aaacttgttg aagatttgga tatgagcgtt gaagagcaat 240 gcaaggtgac agagacatgg ctgacggagc acatccagga taatctacag gtcgttgcaa 300 agtgtccagg ccaacttgta acaaagcatg tcgttaaagg cccaagtccg cattttcaac 360 tgtatttatc catgcatgat aaggcaaagt tgtacttttc acctttgctt ggaaagtatg 420 acaagagtag gttgaacagg gcagcattta tcaaagatct ttcaaagtac gcaaagccga 480 tttatattgg agagatcaat tatgaaatct ttgataaggc agttgatcga gttataagca 540 tcctcagaag tgtaggaatg ctacagtgca catacgtgac ggacgaagaa gaaattttca 600 attcgttgaa tatgaacgca gccgtaggtg cactctacac aggaaagaag aaagactatt 660 tcaaagattt ctcgaacgat gacaaagccg aaatcatcat gcgttcatgt gagcgcatct 720 acaatggaca attgggtgta tggaacggtt cactcaaagc tgaaatacga ccaatagaga 780 aaaccatact aaacaagaca cgcactttca cagcagcgcc attagaaact ctacttggtg 840 ggaaagtatg tgtggatgat ttcaacaatc aattttattc acatcatctt gaaggcccat 900 ggaccgtagg aatcacaaag ttttatggag gatggaaccg acttttggag aaattgccag 960 aaggatggat ttattgcgat gcagatggat ctcagttcga cagctcacta actccatatc 1020 ttattaatgc tgtattgcac attcgcttac atttcatgga agaatgggag ttgggagctc 1080 agatgttgcg aaatttatac acagagattg tttatacgcc aatcgcaacg cctgatgggt 1140 ctgtcatcaa gaaattcaaa ggaaataata gtgggcaacc atctacagtc gttgacaaca 1200 cgcttatggt tattatagca tttaattacg caatgttatc aagtggcatt cctgaagaca 1260 aaattgacga ctgttgtaga atgtttgcaa atggtgacga cttactcttg gcagtgcatc 1320 cggattacga atatatattg gacggatttc aaaatcattt tggaaacctt ggccttaact 1380 ttgagttcac atcgaggaca aaggacaaat cagagttatg gttcatgtca acacaaggag 1440 tcaagtgtga aggtatctac ataccaaaac tcgaaaggga aagaatagtc gcaatccttg 1500 aatgggaccg atcgaatttg cctgagcatc gtcttgaagc tatctgtgca gccatggttg 1560 aatcatgggg ttacccagat ttagttcatg aaattcggaa attttatgcg tggcttcttg 1620 aaatgcaacc cttcgcgaac ctggcaaagg aaggcatggc gccatacata gcagaaacag 1680 cactccgcaa cctctatctt ggaacaggca tcaaagaaga agaaattgaa aaatatttta 1740 gacagtttgt caaggatctt cctggatacg tagaagatta caatgaagaa gttattcatc 1800 aatctggtca agttgacgca gggagacagg gcggtagcgg cgctcaagga ggcacaccac 1860 cagcaggaag tggaggcact ggatctggca ctcaaggcaa tgggggtcag acgggatccc 1920 aaagaagtgg tggtcaacaa ggatccggtg ggggcactgg tcaaggagca gctggaaaca 1980 acggcggagg tcagacagga ggttctagtg ggacagctgg ccagagagat aaggacgttg 2040 acgcaggctc ggctggaaag atagccgtac caaagcttaa agccatgtca aagaaaatgc 2100 gcttgccaaa ggcaaaagga aaagacgtct tgcatttgga ctttttgttg acatacaagc 2160 cacaacagca ggacatatcg aacacaagag caactaagga agagttcgat agatggtacg 2220 acgccataaa gaaggagtac gagatcgatg atacacaaat gacagtcgtc atgagtggtc 2280 tgatggtctg gtgcatcgaa aatggttgct caccaaacat aaacggaaat tggacgatga 2340 tggatgggga tgaacaaaga gttttcccac taaaaccagt tattgaaaac gcatctccaa 2400 cttttcgaca agttatgcat catttcagtg atgcagctga agcgtatata gaatacagaa 2460 attctactga gcgatacatg ccaagatatg gacttcagcg aaatctcacc gactatagct 2520 tagcgcggta tgcttttgat ttctatgaaa tgacttcacg cacaccagct agagctaagg 2580 aagcccacat gcagatgaaa gccgcagcag ttcgtggttc aaacacacga ctgttcggct 2640 tggacggaaa tgtcggcgag actcaggaga atacagagag acacacagct ggcgacgtta 2700 gtcgcaatat gcactctctg ttgggagtgc agcaacacca ctagtctcct ggaaaccctg 2760 tttgcagtac ctataatata tactaatata tagtacgttg gtgaggcttt gcctcggttt 2820 tactatctta ttatgtatgt atttacagcg tgaaccagtc tgcggcatgc agggttggac 2880 ccagcgtgtt ctggtgtagc gtgtactagc gtcgagccat gagacggact gcactgggtg 2940 tggctttgcc acttgtgttg cgagtttcct ggtaagagac aaaaaaaaaa aaaaa 2995 //