ID   DQ641947; SV 1; linear; genomic RNA; STD; VRL; 2133 BP.
XX
AC   DQ641947;
XX
DT   20-JUN-2006 (Rel. 88, Created)
DT   20-JUN-2006 (Rel. 88, Last updated, Version 1)
XX
DE   Tomato ringspot virus isolate raspberry RNA-dependent RNA polymerase gene,
DE   partial cds.
XX
KW   .
XX
OS   Tomato ringspot virus
OC   Viruses; Riboviria; Picornavirales; Secoviridae; Comovirinae; Nepovirus.
XX
RN   [1]
RP   1-2133
RA   Jing B., Yun C.H., Fang Z.S., Fan F.J.;
RT   "Cloning and sequence analysis of the RNA-dependent RNA-polymerase of
RT   Tomato ringspot virus-Canada raspberry isolate";
RL   Unpublished.
XX
RN   [2]
RP   1-2133
RA   Jing B., Yun C.H., Jun Z.W., Fang Z.S., Fan F.J.;
RT   ;
RL   Submitted (17-MAY-2006) to the INSDC.
RL   Chinese Academy of Inspection and Quarantine, Beijing, China
XX
DR   MD5; 906856a2c21fbc081f22552b4b1b27c1.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1..2133
FT                   /organism="Tomato ringspot virus"
FT                   /isolate="raspberry"
FT                   /mol_type="genomic RNA"
FT                   /country="Canada"
FT                   /db_xref="taxon:12280"
FT   CDS             <1..>2133
FT                   /codon_start=1
FT                   /product="RNA-dependent RNA polymerase"
FT                   /db_xref="GOA:Q155U1"
FT                   /db_xref="InterPro:IPR001205"
FT                   /db_xref="InterPro:IPR007094"
FT                   /db_xref="UniProtKB/TrEMBL:Q155U1"
FT                   /protein_id="ABG23688.1"
FT                   /translation="SSIIKSLVQEAGIEERGVSKVGHIKDPAETPHVGGKTKLELVDEA
FT                   FLVPSPVEVKIPSILSKDDPRIPEAYKGYDPLGDAMEKFYEPMLDLDGDVLECVMADMY
FT                   DEFYDCQTTLRIMSDDEVINGSDFGFNIEAVVKGTSEGYPFVLSRRAGEKGKARFLEEL
FT                   EPQPGDTKPKYKLVEGTEVHSAMMAMEEQARTEVPLLIGMDVPKDERLKPSKVLEKPKT
FT                   RTFVVLPMHYNLLLRKYVGILCSSMQVNRHRLACAVGTNPYSRDWTDIYQRLAEKNSVA
FT                   LNCDYSRFDGLLNYQAYVHIVNFINRLYNDEHSTVRGNLLMAMYGRWSVCGQRVYEVRA
FT                   GMPSGCALTVIINSLFNELLIGYVYRVTVPRSLVNNFKQEVCLIVYGDDNLISIKPDTM
FT                   KYFNGEQIKSTLAKYRITITDGSDKNSPVLRAKPLKQLDFLKRGFRVESDGRVLAPLDL
FT                   QAIYSSLYYINPQGNILNSLFLNAQVALRELYLHGDVEQFTAVRNFYVKQIGGNFLNLP
FT                   QWRHCASFHDEQYSQWKPWSPVKFLEVDVPDVKFLQHKAPATALSIVADRLAVAGPGWR
FT                   NKDPDKYLLVSLTSLKANEGGLYFPVDYGEGTGQQATEASIRAYRRLKDHRVRHMRDSW
FT                   NEGKTIVFRCEGPFVSGWAAAISFGASIGMNAQDLLINYGIQGGAHRDFLGRYFINTRF
FT                   KELERYDRPYATRISAG"
XX
SQ   Sequence 2133 BP; 561 A; 416 C; 528 G; 628 T; 0 other;
     tctagcatta tcaagtccct tgttcaggaa gctggcattg aggagagagg agtgtctaaa        60
     gtggggcata ttaaggatcc tgctgagaca ccacatgtgg gagggaaaac taagcttgag       120
     ttggtggatg aagccttttt ggtgccatca ccagttgaag ttaagatccc ttctattctt       180
     tcaaaggatg atcctcgcat tcccgaagct tacaagggat atgatccatt gggcgatgct       240
     atggaaaaat tttacgagcc catgctggac ctcgatgggg atgttttgga gtgcgttatg       300
     gctgatatgt atgacgagtt ctatgattgc cagacgacac ttcgcattat gtctgatgac       360
     gaagttatca atggcagcga ctttggtttt aatatcgagg ccgttgttaa agggacttct       420
     gaaggctacc cgtttgtttt gagtcgacga gcgggtgaaa aaggtaaagc tcgtttttta       480
     gaagagctag agcctcaacc aggagacacc aagcccaaat acaagttggt tgaaggtacc       540
     gaggtgcatt ccgctatgat ggcaatggag gagcaggctc gtactgaggt tccgttgctt       600
     attggaatgg atgttccgaa ggatgagaga ctcaagccgt ccaaggtact ggagaagcct       660
     aagacgcgca cattcgttgt tctcccaatg cactataact tgttgctacg caagtacgta       720
     ggaatacttt gttctagcat gcaagttaat aggcaccgtt tggcatgcgc tgtgggaacc       780
     aacccatatt cgcgtgattg gacggatatt tatcaacgcc tggctgaaaa aaattcagta       840
     gccttgaact gcgactatag tcgttttgat gggctactta attatcaggc atatgttcat       900
     attgtaaatt ttattaatag gttatataat gatgaacata gtaccgttcg tggcaatctt       960
     ttaatggcca tgtatggtag gtggagtgtg tgtggacaac gtgtttacga agttcgcgct      1020
     ggcatgccct ctggatgtgc cctcaccgtg attattaact ctctttttaa cgagctatta      1080
     atcggatatg tttatcgcgt cactgtacca cgctccctag taaataattt taaacaggaa      1140
     gtgtgtctca tagtatacgg tgacgataat ttgatttcta ttaagccaga caccatgaaa      1200
     tatttcaatg gtgaacagat taaatctact ctggctaaat ataggattac cattactgat      1260
     ggcagtgata agaactcgcc agtccttaga gccaagcctc tgaagcaact tgattttttg      1320
     aagagaggct ttagggttga aagtgatgga agggtgcttg cccccctcga tttgcaagct      1380
     atctattctt ccctgtatta tattaaccca cagggaaaca tattaaattc tttattttta      1440
     aatgctcagg ttgctctgag agagttatat ctccatggtg atgttgagca attcactgct      1500
     gtcaggaatt tctacgtcaa gcaaattggc gggaacttcc tgaatttacc ccaatggaga      1560
     cactgtgctt cctttcatga tgagcagtat tctcaatgga agccgtggtc acctgtgaaa      1620
     tttttggagg tagatgtgcc tgatgttaaa tttttgcaac acaaggcacc agccaccgcc      1680
     ctttcgattg ttgctgatag actcgcggtt gcaggacctg gatggcgcaa taaagatcca      1740
     gataagtact tgcttgtgag tcttactagt ttaaaggcta acgagggcgg cctgtatttt      1800
     cccgttgatt atggggaagg tacaggacaa caagctacgg aagcttctat tagagcttac      1860
     cgtagattaa aagatcatcg cgtacgccat atgcgcgatt cttggaatga agggaaaacc      1920
     atcgtgtttc gatgtgaggg tcctttcgtt tctggttggg ctgcagccat ctcgttcggt      1980
     gcgagtattg gtatgaatgc ccaagatcta ctcatcaatt atggcataca aggtggcgct      2040
     catagagatt ttctagggcg ctattttatt aacacacgct tcaaagagct ggagcgttat      2100
     gataggcctt atgccactcg catttcagcg ggc                                   2133
//