ID DQ641708; SV 1; circular; genomic DNA; STD; VRL; 2757 BP. XX AC DQ641708; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Ludwigia yellow vein virus segment DNA-A, complete sequence. XX KW . XX OS Ludwigia yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2757 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2757 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; e0decf840bac92e8e541043da06ac0b0. DR EuropePMC; PMC4221606; 25119676. XX FH Key Location/Qualifiers FH FT source 1..2757 FT /organism="Ludwigia yellow vein virus" FT /segment="DNA-A" FT /host="primrose willow (Ludwigia octovalvis, Onagraceae); FT weed" FT /mol_type="genomic DNA" FT /country="Viet Nam:Hochiminh" FT /note="acronym: LuYVV" FT /db_xref="taxon:325111" FT gene 147..497 FT /gene="AV2" FT CDS 147..497 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A5H1E7" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:A5H1E7" FT /protein_id="ABG26108.1" FT /translation="MWDPLEHEFPETVHGFRCMPAIKYLQAVADTYAPDTVGYDLIRDL FT ISIVRAGNYVEASRRYSHFNTRLQSTSPVELRFPRSEPCCCPHCPRHNPKECLDVQAHV FT SQAQTVQNVQKP" FT gene 307..1080 FT /gene="AV1" FT CDS 307..1080 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:A5H1E8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A5H1E8" FT /protein_id="ABG26107.1" FT /translation="MSKRPADIVISTPVSKVRRRLNFDSPGVSRAAARTVLGITRKNAW FT TYRPTYRKPRLYRMYRSPDVPRGCEGPCKVQSFEKKHDVGHTGTLLCVSDVTRGNGLTH FT RTGKRFCIKSIYILGKLWMDENIKTKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNE FT PSTATIKNDLRDRLQVLHRFQATLTGGQYACKEQVMVKRFWKINNHVVYNHQEKAAYEN FT HTENALVLYMACTHASNPVYATLKIRIYFYDSVQN" FT gene complement(1077..1481) FT /gene="AC3" FT CDS complement(1077..1481) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:A5H1E9" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5H1E9" FT /protein_id="ABG26111.1" FT /translation="MDFRTGEYITATQAENGVYTWTVRNPLYFKITKHLERPFLRDHDV FT ITIQVQFNYNLRKALGMHQCFLICQIWTRLRPQTGRFLRVFNVQCMKYLDNLGIISINN FT VIRAITHVLYDVLEGTIDAQLTHIIKYNLY" FT gene complement(1222..1629) FT /gene="AC2" FT CDS complement(1222..1629) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H1F0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H1F0" FT /protein_id="ABG26110.1" FT /translation="MQNSSSSQSHCTQVPIKVQHRIAKKKSIRRRRVDLPCGCSYFFPI FT TCANHGFSHRGVHHCNSGREWRLYLDGQKSPLFQDYQAPGEAIPEGPRRNNNPGPVQLQ FT PEESTGDAPVFPDLPDLDSFTSSDWAFLKSI" FT gene complement(1529..2617) FT /gene="AC1" FT CDS complement(1529..2617) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:A5H1F1" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H1F1" FT /protein_id="ABG26109.1" FT /translation="MPRPRSFQIKAKNLFLTYPKCPIPKEEALELIKAIQCPSDKLFVR FT VAQEKHSDGTLHLHALIQFKGKAQFRNPRHFDITHPNTSSQFHPNFQGAKSSSDVKSYI FT EKDGDYVDWGVFQVDGRSARGGQQTANDAAAEALNAGSKEAALSIIREKLPKEYIFQFH FT NLNSNLDRIFSPPAEVFVSPFLASSFDQVPEELECWAEENVRDAAARPWRPVSIVIEGE FT SRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDW FT QSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKSWALKNAEFIFLSEPL FT YSGTHQSPAQNSQEEVNTPEES" FT gene complement(2203..2460) FT /gene="AC4" FT CDS complement(2203..2460) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H1F2" FT /protein_id="ABG26112.1" FT /translation="MGLCISMPSSNSRVKPNSEIPGTLTLRIPTPPHNSIRTSKEPSPV FT LMSSPTSRRTVITSTGVYFKSTEDLLEEVSRRLMMQQQKR" XX SQ Sequence 2757 BP; 707 A; 604 C; 657 G; 789 T; 0 other; accggatggc cgcgcaaatt tttcccccct ttcactttag tggtccccac gcactatttt 60 ttgtcggcca atgagaatgc gcgttgaaag cttagatatc cttgtggtcc cgccataaat 120 aacttcccct cgaaggtaaa ttcaaaatgt gggatccgtt ggaacacgag tttccggaaa 180 ctgtgcacgg tttccgttgt atgcccgcga tcaaatactt gcaggctgta gcggatacgt 240 atgctccgga tacggtaggt tacgatctta ttcgtgattt aatttctatt gtacgagctg 300 gcaactatgt cgaagcgtcc cgccgatata gtcatttcaa cacccgtctc caaagtacgt 360 cgccggttga acttcgattc ccccggagtg agccgtgctg ctgcccgcac tgtcctcggc 420 ataacccgaa agaatgcctg gacgtacagg cccacgtatc gcaagcccag actgtacaga 480 atgtacagaa gccctgatgt tcctcggggc tgtgagggtc catgtaaggt tcagtcgttc 540 gagaagaagc atgatgtggg tcatactggt acattattat gtgtgtccga tgttactcgt 600 ggaaatgggt taactcatcg cactgggaag aggttctgta ttaagtctat ttacattctg 660 ggtaagttat ggatggatga gaacatcaag acgaagaatc acacgaacac ggtcatgttc 720 tggttagtta gggataggcg tcctgtcact acgccctatg ggtttggtga ggcattcaac 780 atgtacgaca atgagcccag tacagccact atcaagaacg atcttcgtga tcgtctgcag 840 gtgctgcata ggtttcaagc cactctcaca ggaggtcagt acgcgtgcaa ggagcaggtc 900 atggtgaaga ggttctggaa gatcaacaat cacgttgtct acaaccatca ggagaaggct 960 gcttacgaga atcacactga gaacgcatta gtattgtata tggcatgtac tcatgcctct 1020 aaccccgtgt atgctacatt gaagatccgc atctacttct atgattcagt ccagaattaa 1080 taaagattat attttattat atgtgtcagt tgagcatcaa ttgtgccctc cagtacatcg 1140 tacaatacat gagttatagc cctaattaca ttgttaatac taataatgcc taagttatct 1200 aagtacttca tacattgaac attaaatact cttaagaaac gcccagtctg aggacgtaaa 1260 cgagtccaga tctggcagat caggaaacac tggtgcatcc ccagtgcttt cctcaggttg 1320 tagttgaact ggacctggat tgttattacg tcgtggtccc tcaggaatgg cctctccagg 1380 tgcttggtaa tcttgaaata gaggggattt ctgaccgtcc aggtatagac gccattctct 1440 gcctgagttg cagtgatgta ctccccggtg cgaaaatcca tggttggcac aggtaattgg 1500 aaagaagtat gagcagccgc agggtagatc aactctcctc cggcgtattg acttcttctt 1560 ggctattctg tgctggactt tgatgggtac ctgagtacag tggctctgag aggaagatga 1620 attctgcatt cttcagtgcc caggatttta gagctgaatt cttatcctcg tccagatatt 1680 ccttatatga tgatgttggt ccaggattgc atagaaagat tgtcggaatg ccccctttaa 1740 tttgaatggg cttcccgtac ttggtattgc tttgccaatc cctctgggcc cccatgaatt 1800 ctttaaagtg ctttagataa tgggggtcca catcatcgat gacgttatac catgcgtcat 1860 ttgagtagat cttggggctc aagtctagat gcccacaaag gtaattatgt gggcctagag 1920 acctggccca cattgtcttc ccagttctac tctctccctc tattactata ctgaccgggc 1980 gccaaggccg cgcagcggca tccctgacgt tctcttccgc ccaacattca agttcttccg 2040 gaacttgatc gaatgaagaa gctaaaaaag gagaaacaaa aacctctgca ggaggtgaaa 2100 aaatcctatc taaattagaa tttaaattgt gaaattgaaa tatatattct ttaggtaatt 2160 tctctctaat aatagataaa gcagcttcct ttgaacctgc attcagcgct tctgctgctg 2220 catcattagc cgtctgctga cctcctctag cagatcttcc gtcgacttga aatacacccc 2280 agtcgacgta atcaccgtcc ttctcgatgt aggacttgac atcagaactg gacttggctc 2340 cttggaagtt cggatggaat tgtgaggagg tgttgggatg cgtaatgtca aagtgcctgg 2400 gatttctgaa ttgggcttta cccttgaatt ggatgagggc atggagatgc agagtcccat 2460 cggagtgttt ctcttgagct actctgacaa ataatttatc agatgggcat tgaatagcct 2520 ttataagctc tagggcttct tctttaggaa tagggcattt gggataggtg agaaataagt 2580 ttttggcttt tatttggaat gaacgaggac gaggcatggt gagaggtata ttgggggctc 2640 tcaaaactct acggaatggg gtgcttgggg tgcctattta tgttgagccc cctaatggca 2700 gatttgtaat ttgcaaagaa aatttcaaat tccaaaagcg gccatccgta taatatt 2757 //