Dbfetch
ID DQ641707; SV 1; circular; genomic DNA; STD; VRL; 2762 BP. XX AC DQ641707; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Sida leaf curl virus isolate 62 segment DNA-A, complete sequence. XX KW . XX OS Sida leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2762 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2762 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; 6bf2c91fb8b5e2c1a1494f335017cdd5. XX FH Key Location/Qualifiers FH FT source 1..2762 FT /organism="Sida leaf curl virus" FT /segment="DNA-A" FT /host="Abutilon indicum, Malvaceae; weed" FT /isolate="62" FT /mol_type="genomic DNA" FT /country="Viet Nam:Thanhhoa" FT /note="acronym: SiLCV" FT /db_xref="taxon:337823" FT gene 134..481 FT /gene="AV2" FT CDS 134..481 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2WCL3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2WCL3" FT /protein_id="ABG26102.1" FT /translation="MWDPLENEFPETVHGFRSMLAVKYMQEIAKSYEPSTLGFEYVRDL FT ISVLRCKDYVQASCKYGVFLSNFFRASKAELRQSSPISCCCPYCPRHKEKKMDQQAHEQ FT KAQVLQNVSNP" FT gene 294..1064 FT /gene="AV1" FT CDS 294..1064 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:A5H1E1" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5H1E1" FT /protein_id="ABG26101.1" FT /translation="MSKRPASMAYSSPISSARRRLNFDSPRPSVAAALTAPGIRRRRWT FT NRPMNRKPRFYRMYRTPDVPKGCEGPCKVQSFDAKDDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPTGTPLDFQQVFNVYDNEP FT ATATVKNDKRDRFQVLRRFHATVTGGQYAAKESAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKCRSYFYDTATN" FT gene complement(1067..1471) FT /gene="AC3" FT CDS complement(1067..1471) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:Q2WCL7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2WCL7" FT /protein_id="ABG26105.1" FT /translation="MDSRTGEYITAAQATSGVYTWDMANPLYFKILDHLDRPFLRNHDI FT ITVQVRFNHNLRKALGIHKCFITFRIWTRLHPQTWRFLRVLRNQVLGYLDRLGVISINN FT VIRAFDHVLYNVIQGTIQVQQTESIKFNLY" FT gene complement(1185..1619) FT /gene="AC2" FT CDS complement(1185..1619) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H1E3" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H1E3" FT /protein_id="ABG26104.1" FT /translation="MRRSSPSQSHCTQVPIKIEHQKVRKKYNRRKRVDLECGCTYFRSL FT NCHNHGFTHRGIHHCSSSDEWRIYLGYGKSPVFQDPRPPGQAVPPQPRHHNGPSEVQPQ FT PEESLGDSQMFHNLPDLDSFTSSDMAFLEGLTQSSSWVLR" FT gene complement(1513..2607) FT /gene="AC1" FT CDS complement(1513..2607) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:A5H1E4" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H1E4" FT /protein_id="ABG26103.1" FT /translation="MSSTRSFKINAKNYFLTYPKCSLTKEEALSQIQNLQTPTSKKYIK FT ICRELHENGEPHLHVLIQFEGKYQCKNKRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTIEWGEFQIDGRSARGGQQTANDAYAAALNTGSKPEALRVLRELAPKDYVLQFH FT NLNANLDRIFTPPLEVYVSPFSFSSFDQVPEELEEWACENVVAAAARPLRPLSLVVEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKTWALKNASFVTLTEPL FT YSGAHQNRASEGEEEVQSQEEGGP" FT gene complement(2148..2450) FT /gene="AC4" FT CDS complement(2148..2450) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H1E5" FT /protein_id="ABG26106.1" FT /translation="MGNLIYTCSSSSRGNTSARISDSSTWSPQTGQHISIRTFRELNQA FT QMSSPISTRTETPSNGESFRSTEDLPEGDNRQPTMLTPQHLTQAVSQRLLEYLGN" XX SQ Sequence 2762 BP; 704 A; 609 C; 644 G; 805 T; 0 other; accggatggc cgcgcgattt tttaaagtgg tcccccccac taaatgttgt cgaccaacca 60 gaaggcgcgc tcaaagctta attgtttttt tccttcctat ataatacttc cctcgtaagt 120 tttgggttca aatatgtggg accctttaga gaacgaattc cctgaaaccg ttcacggttt 180 ccgttctatg cttgcggtga agtatatgca ggagattgca aagagctacg aacctagcac 240 attgggtttt gaatacgtcc gtgatctcat ctccgttctg aggtgtaagg attatgtcca 300 agcgtcctgc aagtatggcg tattcctctc caatttcttc cgcgcgtcga aggctgaact 360 tcgacagtcc tcgcccatca gttgctgctg cccttactgc cccaggcata aggagaagaa 420 gatggaccaa caggcccatg aacagaaagc ccaggttcta cagaatgtat cgaacccctg 480 atgttcctaa gggctgtgag ggcccatgta aggtgcaatc gttcgatgcc aaagacgata 540 ttgggcacat gggtaaggtt atttgtttgt ctgatgttac tagaggtatt gggctgaccc 600 acagagtggg taagcgtttc tgtgtgaagt cattgtattt cgtagggaaa atatggatgg 660 acgagaatat caaggtgaaa aaccacacga acaccgttat gttttggatt gttagggatc 720 ggcgacctac cggaactcca ttggatttcc agcaggtgtt taacgtctac gataacgagc 780 ccgccactgc taccgtcaag aacgacaaac gtgatcgttt tcaggtttta aggaggttcc 840 atgcaacggt gaccggaggg caatatgcag ctaaggagtc ggctattatt aggaagtttt 900 atcgtgtgaa caattatgtt gtttacaacc accaggaggc cggaaaatac gagaaccata 960 ctgagaatgc tttgctcttg tacatggcat gtactcatgc ctctaatcct gtgtatgcta 1020 ctttgaaatg taggagttat ttctacgata ctgcaacgaa ttaagattaa taaaggttga 1080 attttattga ctcagtttgt tgcacctgaa ttgtgccttg aattacattg tataatacat 1140 gatcaaaagc cctaattaca ttattaatac taataactcc taatctatct aagtacccaa 1200 gaacttgatt gcgtaagacc ctcaagaaac gccatgtctg aggatgtaaa cgagtccaga 1260 tccggaaggt tatgaaacat ttgtgaatcc ccaaggcttt cctcaggttg tggttgaacc 1320 tcacttggac cgttatgatg tcgtggttgc ggaggaacgg cctgtccagg tggtctagga 1380 tcttgaaata caggggattt gccatatccc aggtatatac gccactcgtc gcttgagctg 1440 cagtgatgta ttcccctgtg cgtgaatcca tggttgtgac agttgagact gcggaagtat 1500 gtgcacccgc attcaaggtc caccctcttc ctgcgattgt acttcttcct caccttctga 1560 tgctcgattt tgatgggcac ctgagtacaa tggctctgtg agggtgacga acgacgcatt 1620 ttttaaagcc caggtcttta aagcggaatt cttttcctcg tccaggtact ctttatagct 1680 ggaattgggc cctggattgc aaaggaagat tgttgggatc ccgcctttaa tttgaactgg 1740 ctttccgtac ttggtattgc tttgccagtc cctctgggcc cccataaact ctttaaagtg 1800 tttgagaaaa tggggatcaa cgtcatcgat gacgttgtac catgcgtcgt tgctgtacac 1860 ctttgggctt aggtctagat gcccacacaa gtaattatgt ggacccaatg acctggccca 1920 catcgtcttc cctgttctac tgtcaccttc taccactaaa ctcaagggcc tcagaggccg 1980 cgcagcggcc gccactacat tctcgcacgc ccactcttca agttcttccg gaacctgatc 2040 aaaagaagaa aaagaaaaag gagaaacata aacctccaaa ggaggtgtaa aaatcctatc 2100 taaatttgca tttaaattat gaaattgtaa tacataatct ttaggggcta gttccctaag 2160 tactctaaga gcctctggct tactgcctgt gttaagtgct gcggcgtaag catcgttggc 2220 tgtctgttgt ccccctctgg cagatcttcc gtcgatctga aactctcccc attcgatggt 2280 gtctccgtcc ttgtcgatat aggacttgac atctgagctt gatttagctc cctgaatgtt 2340 cggatggaaa tgtgctgacc tgtttgggga gaccaggtcg aagaatcgct tattcttgca 2400 ctggtatttc ccctcgaact ggatgagcac gtgtagatga ggttccccat tttcgtgtag 2460 ctctctgcag attttgatgt attttttgga ggttggggtt tgtaggtttt ggatttggga 2520 aagtgcttcc tctttagtta gagagcattt gggataagta aggaaataat ttttggcgtt 2580 tatcttaaag gacctggtag aagacatggt caatggacac caattgacta accaaaaaca 2640 acttgctatg tgaatcggtg tctggagtct tatttatact tggacaccaa atggcattaa 2700 tcgtaaatac tcatagaaat tcaaatccct cgcgctccaa aagcggccat ccgtataata 2760 tt 2762 //