ID DQ641706; SV 1; circular; genomic DNA; STD; VRL; 2760 BP. XX AC DQ641706; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Sida leaf curl virus isolate 61 segment DNA-A, complete sequence. XX KW . XX OS Sida leaf curl virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2760 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2760 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; cc699e36662008c63f56e3aa926b2fb6. XX FH Key Location/Qualifiers FH FT source 1..2760 FT /organism="Sida leaf curl virus" FT /segment="DNA-A" FT /host="Abutilon indicum, Malvaceae; weed" FT /isolate="61" FT /mol_type="genomic DNA" FT /country="Viet Nam:Thanhhoa" FT /note="acronym: SiLCV" FT /db_xref="taxon:337823" FT gene 134..481 FT /gene="AV2" FT CDS 134..481 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:Q2WCL3" FT /db_xref="InterPro:IPR002511" FT /db_xref="InterPro:IPR005159" FT /db_xref="UniProtKB/TrEMBL:Q2WCL3" FT /protein_id="ABG26096.1" FT /translation="MWDPLENEFPETVHGFRSMLAVKYMQEIAKSYEPSTLGFEYVRDL FT ISVLRCKDYVQASCKYGVFLSNFFRASKAELRQSSPISCCCPYCPRHKEKKMDQQAHEQ FT KAQVLQNVSNP" FT gene 294..1064 FT /gene="AV1" FT CDS 294..1064 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:A5H1D8" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="InterPro:IPR029053" FT /db_xref="UniProtKB/TrEMBL:A5H1D8" FT /protein_id="ABG26095.1" FT /translation="MSKRPASMAYSSPISSARRRLNFDSPRPSVAAALTAPGIRRRRWT FT NRPMNRKPRFYRMYRTPDVPKGCEGPCKVQSFDAKDDIGHMGKVICLSDVTRGIGLTHR FT VGKRFCVKSLYFVGKIWMDENIKVKNHTNTVMFWIVRDRRPTGTPLDFQQVFNVYDNEP FT ATATVKNDKRDRFQVLRRFHATVTGGQYAAKESAIIRKFYRVNNYVVYNHQEAGKYENH FT TENALLLYMACTHASNPVYATLKCRSYFYDNVTN" FT gene complement(1067..1471) FT /gene="AC3" FT CDS complement(1067..1471) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:Q2WCL7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:Q2WCL7" FT /protein_id="ABG26099.1" FT /translation="MDSRTGEYITAAQATSGVYTWDMANPLYFKILDHLDRPFLRNHDI FT ITVQVRFNHNLRKALGIHKCFITFRIWTRLHPQTWRFLRVLRNQVLGYLDRLGVISINN FT VIRAFDHVLYNVIQGTIQVQQTESIKFNLY" FT gene complement(1185..1619) FT /gene="AC2" FT CDS complement(1185..1619) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H1E0" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H1E0" FT /protein_id="ABG26098.1" FT /translation="MRRSSPSQSHCTQVPIKIEHQKVKKKYNRRKRVDLECGCTYFRSL FT NCHNHGFTHRGIHHCSSSDEWRIYLGYGKSPVFQDPRPPGQAVPPQPRHHNGPSEVQPQ FT PEESLGDSQMFHNLPDLDSFTSSDMAFLEGLTQSSSWVLR" FT gene complement(1513..2607) FT /gene="AC1" FT CDS complement(1513..2607) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /note="2nd start codon" FT /db_xref="GOA:A5H1D5" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H1D5" FT /protein_id="ABG26097.1" FT /translation="MPPPRRFKIQAKNYFLTYPQCSLTKEEALSQLQTLETPTNKKYIK FT ICRELHEDGSPHLHVLIQFEGKYVCTNNRFFDLVSPNRSAHFHPNIQGAKSSSDVKSYI FT DKDGDTLDWGEFQIDGRSARGGQQTANDAYAQALNSGSKSEALRVIRELAPKDFVLQFH FT NLNANLDRIFTPPMEVYVSPFLSSSFDRVPEELEEWAAENVVAAAARPLRPLSLVVEGD FT SRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKTWALKNASFVTLTEPL FT YSSAHQNRASEGEEEVQSQEEGGP" FT gene complement(2160..2450) FT /gene="AC4" FT CDS complement(2160..2450) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H1D6" FT /protein_id="ABG26100.1" FT /translation="MGALISTCLYSSRGNTSARITDSSTWSPQTGQHISIRTFRELNPA FT PTSSPTSTRTETPSIGESFRSMEDLQEGDNRQPTTLTPRHLTAEVSRRLLE" XX SQ Sequence 2760 BP; 704 A; 605 C; 649 G; 802 T; 0 other; accggatggc cgcgcgattt tttaaagtgg tccccaccac taaatgatgt cgaccaacca 60 gaaggcgcgc tcaaagctta attgtttttt ccctccctat ataatacttc cctcgtaagt 120 tttgggttca aatatgtggg accctttaga gaacgaattc cctgaaaccg ttcacggttt 180 ccgttctatg cttgcggtga agtatatgca ggagattgcg aagagctacg aacctagcac 240 attgggtttt gaatacgtcc gtgatcttat ctccgttctg aggtgtaagg attatgtcca 300 agcgtcctgc aagtatggcg tattcctctc caatttcttc cgcgcgtcga aggctgaact 360 tcgacagtcc tcgcccatca gttgctgctg cccttactgc cccaggcata aggagaagaa 420 gatggaccaa caggcccatg aacagaaagc ccaggttcta cagaatgtat cgaacccctg 480 atgttcctaa gggctgtgag ggcccatgta aggtgcaatc gttcgatgcc aaagacgata 540 ttgggcacat gggtaaggtt atttgtttgt ctgatgttac tagaggtatt gggctgaccc 600 acagagtggg taagcgtttc tgtgtgaagt cattgtattt cgtagggaaa atatggatgg 660 acgagaatat caaggtgaaa aaccacacga acaccgttat gttttggatt gttagggatc 720 ggcgacctac cggaactcca ttggatttcc agcaggtgtt taatgtctac gataacgagc 780 ccgccactgc tacagtcaag aacgacaaac gtgatcgttt ccaggtttta aggaggttcc 840 atgcaacggt gaccggaggg caatatgcag ctaaggagtc ggctattatt aggaagtttt 900 atcgtgtgaa caattatgtt gtttacaacc accaggaggc cggaaaatac gagaaccata 960 ctgagaatgc tttgctcttg tacatggcat gtactcatgc ctctaatcct gtgtatgcta 1020 ctttgaaatg taggagttat ttctacgata atgtaacgaa ttaggattaa taaagattga 1080 attttattga ctcagtttgt tgcacctgaa ttgtgccttg aattacattg tataatacat 1140 gatcaaaagc cctaattaca ttattaatac taataactcc taatctatct aagtacccaa 1200 gaacttgatt gcgtaagacc ctcaagaaac gccatgtctg aggatgtaaa cgagtccaga 1260 tccggaaggt tatgaaacat ttgtgaatcc ccaaggcttt cctcaggttg tggttgaacc 1320 tcacttggac cgttatgatg tcgtggttgc ggaggaacgg cctgtccagg tggtctagga 1380 tcttgaaata caggggattt gccatatccc aggtatatac gccactcgtc gcttgagctg 1440 cagtgatgta ttcccctgtg cgtgaatcca tggttgtgac agttgagact gcggaagtat 1500 gtgcacccgc attcaaggtc caccctcttc ctgcgattgt acttcttctt caccttctga 1560 tgctcgattt tgatgggcac ttgagtacaa tggctctgtg agggtgacga acgacgcatt 1620 ttttaaagcc caggtcttta aagcggagtt cttttcctcg tccaggtact ctttatagct 1680 ggaattgggc cctggattgc aaaggaagat tgttgggatc ccgcctttaa tttgaactgg 1740 ctttccgtac ttggtattgc tttgccagtc cctctgggcc cccataaact ctttaaagtg 1800 tttgagaaaa tggggatcaa cgtcatcgat gacgttatac catgcgtcgt tgctgtacac 1860 ctttgggctt aggtctagat gcccacacaa gtaattatgt ggacccaatg acctggccca 1920 catcgtcttc cccgtacgac tgtcaccttc taccactaaa cttaagggcc tcagaggccg 1980 cgcagcggcc gccactacat tctccgccgc ccactcttcg agttcttccg gaactcgatc 2040 aaaagaagaa gaaagaaaag gcgaaacata aacctccatt ggaggtgtaa aaatcctatc 2100 taagttagca tttaaattat gaaattgtaa aacaaaatct ttgggtgcta actccctaat 2160 tactctaaga gcctccgact tacttccgct gttaagtgcc tgggcgtaag cgtcgttggc 2220 tgtctgttgt ccccctcttg cagatcttcc atcgatctga aactctcccc aatcgagggt 2280 gtctccgtcc ttgtcgatgt aggacttgac gtcggagctg gatttagctc cctgaatgtt 2340 cggatggaaa tgtgctgacc tgtttgggga gaccaagtcg aagaatctgt tattcgtgca 2400 gacgtatttc ccctcgaact gtataagcac gtggagatga gggctcccat cttcgtgaag 2460 ctctctacag attttgatgt attttttatt tgttggggtt tctagggttt gaagttggga 2520 aagtgcttct tctttagtta gagagcactg tggataagta aggaaataat ttttagcttg 2580 gatcttaaaa cgacgtgggg gaggcatttt taagtgtcgt tttgtattgg agacaatcaa 2640 ctctttgaaa tgaattggag actggagtac aatatatatg agtctccaaa tggcattctc 2700 gtaaatcctc atagaaattc aaattcctcg cgctccaaaa gcggccatcc gtctaatatt 2760 //