ID DQ641704; SV 1; circular; genomic DNA; STD; VRL; 2745 BP. XX AC DQ641704; XX DT 03-MAY-2007 (Rel. 91, Created) DT 21-DEC-2007 (Rel. 94, Last updated, Version 2) XX DE Alternanthera yellow vein virus isolate Ecl segment DNA-A, complete DE sequence. XX KW . XX OS Alternanthera yellow vein virus OC Viruses; Geminiviridae; Begomovirus. XX RN [1] RP 1-2745 RX DOI; 10.1099/vir.0.83236-0. RX PUBMED; 18089756. RA Ha C., Coombs S., Revill P., Harding R., Vu M., Dale J.; RT "Molecular characterization of begomoviruses and DNA satellites from RT Vietnam: additional evidence that the New World geminiviruses were present RT in the Old World prior to continental separation"; RL J. Gen. Virol. 89(Pt 1):312-326(2008). XX RN [2] RP 1-2745 RA Ha C.V., Coombs S., Revill P.A., Harding R.M., Vu M.T., Dale J.L.; RT ; RL Submitted (18-MAY-2006) to the INSDC. RL Institute of Health and Biomedical Innovation, Queensland University of RL Technology, 2 George Street, Brisbane, Queensland 4001, Australia XX DR MD5; c3af5a4faf031a29594df0ffe94934e8. XX FH Key Location/Qualifiers FH FT source 1..2745 FT /organism="Alternanthera yellow vein virus" FT /segment="DNA-A" FT /host="Eclipta prostrate, Asteraceae; weed" FT /isolate="Ecl" FT /mol_type="genomic DNA" FT /country="Viet Nam:Hanoi" FT /note="acronym: AlYVV" FT /db_xref="taxon:337826" FT gene 154..501 FT /gene="AV2" FT CDS 154..501 FT /codon_start=1 FT /gene="AV2" FT /product="AV2 protein" FT /db_xref="GOA:A5H1C5" FT /db_xref="InterPro:IPR002511" FT /db_xref="UniProtKB/TrEMBL:A5H1C5" FT /protein_id="ABG26084.1" FT /translation="MWDPLLNPFPQTVHAFRCMLSVKYLQAVEDTYAPDTLGADLIREL FT IAVIRANNYVEACSRYDHFIKRIEGTTSAQLRQPYGSPCYCPHCPCHSKTAVVEPSHVS FT QAKVVPNVQKP" FT gene 314..1084 FT /gene="AV1" FT CDS 314..1084 FT /codon_start=1 FT /gene="AV1" FT /product="CP protein" FT /db_xref="GOA:A1XI78" FT /db_xref="InterPro:IPR000263" FT /db_xref="InterPro:IPR000650" FT /db_xref="UniProtKB/TrEMBL:A1XI78" FT /protein_id="ABG26083.1" FT /translation="MSKRAADMIISSSGSRVRRRLNFDSPMARRATAPIVRATRKQQWS FT SRPMYRKPRLYRMYRSPDVPYGCEGPCKVQSFEKKHDVSHTGTLLCVSDVTRGSGITHR FT VGKRFCIKSIYIIGKIWMDENIKSKNHTNTVMFWLVRDRRPVTTPYGFGEAFNMYDNEP FT STATIKNDLRDRLQVLHRFSATVTGGQYASKEQAMIKRFWRINNHVVYNHQEKAAYENH FT TENALILYMACTHASNPVYATLKIRIYFYDSVMN" FT gene complement(1081..1485) FT /gene="AC3" FT CDS complement(1081..1485) FT /codon_start=1 FT /gene="AC3" FT /product="REn protein" FT /db_xref="GOA:A5H1C7" FT /db_xref="InterPro:IPR000657" FT /db_xref="UniProtKB/TrEMBL:A5H1C7" FT /protein_id="ABG26087.1" FT /translation="MDSRTGEYITAAQAENGVYTWEITNPLYFKIIKHDSRPYLREHDI FT ITVQIQFNYNLRKALGIHKCFLTCQIWTRLQPQTLSFLRVFKTQIMKYLDNLGVICLNN FT VIRAINHVLWNALHHTLYVNFTHIIKFNIY" FT gene complement(1226..1630) FT /gene="AC2" FT CDS complement(1226..1630) FT /codon_start=1 FT /gene="AC2" FT /product="TrAP protein" FT /db_xref="GOA:A5H1C8" FT /db_xref="InterPro:IPR000942" FT /db_xref="UniProtKB/TrEMBL:A5H1C8" FT /protein_id="ABG26086.1" FT /translation="MRHSSPSTSHCTQVPIKVQHRLAKRKPRRRRVDLRCGCSLYISID FT CHNYGFTHRGIHHCSSGREWRVYLGNNQSPLFQDHQTRQQTIPTGTRHHYSSDTVQLQP FT AEGFGDTQMFSDLPDLDSLTTSDIEFLKGL" FT gene complement(1533..2618) FT /gene="AC1" FT CDS complement(1533..2618) FT /codon_start=1 FT /gene="AC1" FT /product="rep protein" FT /db_xref="GOA:A5H1C3" FT /db_xref="InterPro:IPR001191" FT /db_xref="InterPro:IPR001301" FT /db_xref="InterPro:IPR022690" FT /db_xref="InterPro:IPR022692" FT /db_xref="UniProtKB/TrEMBL:A5H1C3" FT /protein_id="ABG26085.1" FT /translation="MRQPGQFRLNRKNFFLTYSQCPISKEEALQQLLNTQTPVNKKFIR FT VCRELHEDGNPHLHALVQFEGKFCLTNSRFFDLQSPNSSSQYHCFITDAKSSSDVKAYI FT EKDGDILDWGTFQIDGRSARGGQQTANDAYARAINTGIKEQALDVIKELAPKDYVLQYH FT NLNANLERIFMPPTQEYISPFNCSSFDQVPEEIEEWAADNVMSAAARPWRPISIVIEGD FT SRTGKTMWARSLGPHNYLCGHIDLSPRVYSNEAWYNIIDDVDPHYVKHFKEFMGAQRDW FT QSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNIGLKNWAIKNATFVTINQPL FT YSGSHQSPTQASQEETSQTEG" FT gene complement(2171..2461) FT /gene="AC4" FT CDS complement(2171..2461) FT /codon_start=1 FT /gene="AC4" FT /product="AC4 protein" FT /db_xref="InterPro:IPR002488" FT /db_xref="UniProtKB/TrEMBL:A5H1C4" FT /protein_id="ABG26088.1" FT /translation="METLISMLLCNSKASSASRIRDSSTYSHPTPPPNTTASSPMQSPV FT QTLRHTSRRTETYLTGVPSRLTVGLQEGDSRQQTMLTQEQLTQELRNRLLM" XX SQ Sequence 2745 BP; 710 A; 567 C; 635 G; 833 T; 0 other; accgatggcc aaaaaaaaat ttatgccggc cccacccggc agcttttgtc tgccactaga 60 caatcccgtc caatcagaat tgagcctgaa agcttaaata aaattggcgc ccgctttaaa 120 tgcttgggtg ctacgtttag tgcgctgtcc actatgtggg atccgcttct aaacccgttt 180 ccccagaccg tgcacgcctt tcgttgcatg ctttctgtaa agtatttaca ggccgttgaa 240 gacacatacg ctcctgatac tttaggcgct gatttaatta gggagttaat tgcagtaatt 300 agggcaaata attatgtcga agcgtgcagc agatatgatc atttcatcaa gcggatcgag 360 ggtacgacgt cggctcaact tcgacagccc tatggctcgc cgtgctactg cccccattgt 420 ccgtgccact cgaaaacagc agtggtcgag ccgtcccatg tatcgcaagc caaggttgta 480 ccgaatgtac agaagccctg atgtgcctta tggctgtgag ggtccatgta aggtccagtc 540 atttgaaaaa aaacatgacg ttagtcatac tggcacgttg ttgtgcgtct ctgatgttac 600 tagaggtagt gggattaccc atagagtagg gaagcgtttc tgtatcaagt caatatacat 660 tatagggaag atatggatgg acgagaacat taagtccaag aatcatacta acacggttat 720 gttctggtta gttagggatc gccgcccagt tacaacgcct tatggttttg gtgaggcgtt 780 taatatgtat gacaatgagc cctctacagc aactatcaag aacgatctgc gtgatcgttt 840 gcaggtgtta cacaggtttt ctgccacagt tactgggggt cagtatgcat ctaaggaaca 900 ggctatgatc aagcgtttct ggaggattaa caaccatgtg gtctacaacc atcaggagaa 960 ggcagcttat gaaaatcata ctgagaatgc cttaattttg tatatggctt gtactcatgc 1020 tagcaatcct gtgtatgcta cgctgaaaat tagaatatat ttctatgact ctgtaatgaa 1080 ttaataaata ttgaatttta ttatatgagt gaagtttaca tacaaagtat ggtgcaatgc 1140 attccatagt acatgattta ttgctctaat tacattgtta agacaaatta caccaagatt 1200 atctaaatac ttcataatct gggtcttaaa gacccttaag aaactcaatg tctgaggttg 1260 taagcgagtc cagatctggc aagtcagaaa acatttgtgt atccccaaag ccttccgcag 1320 gttgtagttg aactgtatct gaactgtaat gatgtcgtgt tcccgtaggt atggtctgct 1380 gtcgtgtttg atgatcttga aatagagggg attggttatt tcccaggtat acacgccatt 1440 ctctgcctga gctgcagtga tgtattcccc tgtgcgtgaa tccatagttg tgacagtcaa 1500 tggagatgta tagtgaacag ccgcaacgca gatcaaccct ccgtctgcga ggtttcctct 1560 tggctagcct gtgttggact ttgatgggaa cctgagtaca gtggctggtt gatggtgacg 1620 aatgtcgcat tctttatggc ccagtttttt agacctatgt ttttctcctc atcaaggaac 1680 tctttatagg aggatgttgg accaggattg cagaggaaga ttgttggaat cccgccttta 1740 atttgaacgg gcttcccgta ttttgtattg gactgccaat ccctttgggc ccccatgaat 1800 tccttgaaat gtttgacgta gtgaggatca acatcgtcta ttatgttata ccaggcctca 1860 ttgctgtaaa ccctaggact aaggtcaata tgaccgcata ggtaattatg tggacctagt 1920 gatctagccc acattgtttt accagtcctg ctgtcacctt ctatgactat acttatgggt 1980 ctccagggcc gcgcagcggc agacattaca ttgtctgcag cccattcctc aatctcttca 2040 gggacctgat caaacgatga acaattaaat ggactaatgt attcttgagt tggaggcatg 2100 aatatgcgct ccagattagc atttaaatta tgatattgta atacatagtc cttaggagct 2160 aactccttaa ttacatcaag agcctgttcc ttaattcctg tgttaattgc tcttgcgtaa 2220 gcatcgtttg ctgtctgctg tccccctctt gcagacctac cgtcaatctg gaaggtaccc 2280 cagtcaagta tgtctccgtc cttctcgatg tatgccttaa cgtctgaact ggactttgca 2340 tcggtgatga agcagtggta ttgggaggag gagttgggtg actgtaggtc gaagaatctc 2400 gaattcgtga ggcagaactt gccttcgaat tgcacaagag catggagatg agggtttcca 2460 tcctcgtgta gttctctaca aaccctaatg aatttcttgt tcactggggt ttgggtgttg 2520 agtaattgct gtagtgcctc ttctttagag atagggcact gtgagtaagt gaggaagaag 2580 ttttttctat ttaatctaaa ttgcccaggc tgacgcatga tgacgtatct gttcacccga 2640 tgggtgctcc ttcaaaactc taagtcaatg ggtgaatggg tgcataatat atagtgttga 2700 ttattccgga ataaaaaatt tttttttggc catcgctcta atatt 2745 //